RNA–Protein interactions for RNA: ENST00000466539.1

PSME4-204, Transcript of proteasome activator subunit 4, humanhuman

TSL 4

Gene PSME4, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSME4-204ENST00000466539 AEBP2Q6ZN18 517 aaPredicted RBP23.26■■□□□ 1.31
PSME4-204ENST00000466539 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
PSME4-204ENST00000466539 PHF23Q9BUL5 403 aaPredicted RBP20.08■□□□□ 0.81
PSME4-204ENST00000466539 SENP3Q9H4L4 574 aaPredicted RBP19.56■□□□□ 0.72
PSME4-204ENST00000466539 PLPPR3Q6T4P5 718 aa18.41■□□□□ 0.54
PSME4-204ENST00000466539 FOXD1Q16676 465 aa18.26■□□□□ 0.51
PSME4-204ENST00000466539 PPP6R1Q9UPN7 881 aa17.7■□□□□ 0.42
PSME4-204ENST00000466539 ADRA2BP18089 450 aa17.66■□□□□ 0.42
PSME4-204ENST00000466539 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
PSME4-204ENST00000466539 MSH5O43196 834 aa17.05■□□□□ 0.32
PSME4-204ENST00000466539 POTEDQ86YR6 584 aa16.57■□□□□ 0.24
PSME4-204ENST00000466539 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
PSME4-204ENST00000466539 KCNA4P22459 653 aa16.06■□□□□ 0.16
PSME4-204ENST00000466539 MAPK8IP2Q13387 824 aaPredicted RBP16.03■□□□□ 0.16
PSME4-204ENST00000466539 SCAF1Q9H7N4 1312 aaKnown RBP15.96■□□□□ 0.15
PSME4-204ENST00000466539 NCBP3Q53F19 620 aaKnown RBP15.77■□□□□ 0.12
PSME4-204ENST00000466539 CNKSR2Q8WXI2 1034 aa15.77■□□□□ 0.12
PSME4-204ENST00000466539 NPM3O75607 178 aaKnown RBP15.68■□□□□ 0.1
PSME4-204ENST00000466539 DMRT2Q9Y5R5 561 aa15.67■□□□□ 0.1
PSME4-204ENST00000466539 RNF216Q9NWF9 866 aaPredicted RBP15.45■□□□□ 0.06
PSME4-204ENST00000466539 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
PSME4-204ENST00000466539 SLC4A1APQ9BWU0 796 aaKnown RBP15.23■□□□□ 0.03
PSME4-204ENST00000466539 DNAJC5BQ9UF47 199 aa15.14■□□□□ 0.01
PSME4-204ENST00000466539 DCAF8L1A6NGE4 600 aa14.97□□□□□ -0.01
PSME4-204ENST00000466539 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
PSME4-204ENST00000466539 ZBTB22O15209 634 aa14.83□□□□□ -0.04
PSME4-204ENST00000466539 SLC4A2P04920 1241 aa14.83□□□□□ -0.04
PSME4-204ENST00000466539 CSRNP3Q8WYN3 585 aa14.78□□□□□ -0.04
PSME4-204ENST00000466539 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
PSME4-204ENST00000466539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.62□□□□□ -0.07
PSME4-204ENST00000466539 CACNB1Q02641 598 aaPredicted RBP14.57□□□□□ -0.08
PSME4-204ENST00000466539 NISCHQ9Y2I1 1504 aa14.54□□□□□ -0.08
PSME4-204ENST00000466539 RNF39Q9H2S5 420 aa14.49□□□□□ -0.09
PSME4-204ENST00000466539 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
PSME4-204ENST00000466539 MYCNP04198 464 aaPredicted RBP14.4□□□□□ -0.1
PSME4-204ENST00000466539 C1QBPQ07021 282 aaKnown RBP14.35□□□□□ -0.11
PSME4-204ENST00000466539 ATF5Q9Y2D1 282 aaPredicted RBP14.17□□□□□ -0.14
PSME4-204ENST00000466539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
PSME4-204ENST00000466539 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
PSME4-204ENST00000466539 SAMD1Q6SPF0 538 aaPredicted RBP14.14□□□□□ -0.15
PSME4-204ENST00000466539 ATXN8OSP0DMR3 200 aa14.11□□□□□ -0.15
PSME4-204ENST00000466539 SPINK5Q9NQ38 1064 aaPredicted RBP14.07□□□□□ -0.16
PSME4-204ENST00000466539 APLP2Q06481 763 aa13.93□□□□□ -0.18
PSME4-204ENST00000466539 CAPN15O75808 1086 aa13.92□□□□□ -0.18
PSME4-204ENST00000466539 TRHP20396 242 aaPredicted RBP13.9□□□□□ -0.18
PSME4-204ENST00000466539 ZNF219Q9P2Y4 722 aaPredicted RBP13.84□□□□□ -0.19
PSME4-204ENST00000466539 ABCB7O75027 752 aa13.72□□□□□ -0.21
PSME4-204ENST00000466539 DSG3P32926 999 aa13.72□□□□□ -0.21
PSME4-204ENST00000466539 POLA2Q14181 598 aa13.71□□□□□ -0.21
PSME4-204ENST00000466539 MKRN4PQ13434 485 aaPredicted RBP13.53□□□□□ -0.24
PSME4-204ENST00000466539 FBLN2P98095 1184 aa13.37□□□□□ -0.27
PSME4-204ENST00000466539 ZBTB12Q9Y330 459 aaPredicted RBP13.34□□□□□ -0.27
PSME4-204ENST00000466539 FKBP8Q14318 412 aa13.3□□□□□ -0.28
PSME4-204ENST00000466539 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
PSME4-204ENST00000466539 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
PSME4-204ENST00000466539 SPDYE2BA6NHP3 402 aa13.06□□□□□ -0.32
PSME4-204ENST00000466539 SPDYE6P0CI01 402 aa13.06□□□□□ -0.32
PSME4-204ENST00000466539 SPDYE2Q495Y8 402 aa13.06□□□□□ -0.32
PSME4-204ENST00000466539 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
PSME4-204ENST00000466539 RBM42Q9BTD8 480 aaKnown RBP13.03□□□□□ -0.32
PSME4-204ENST00000466539 SSUH2Q9Y2M2 353 aa13.02□□□□□ -0.33
PSME4-204ENST00000466539 POTEHQ6S545 545 aa13.01□□□□□ -0.33
PSME4-204ENST00000466539 PROM2Q8N271 834 aa13□□□□□ -0.33
PSME4-204ENST00000466539 PABPN1Q86U42 306 aaKnown RBP eCLIP12.91□□□□□ -0.34
PSME4-204ENST00000466539 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
PSME4-204ENST00000466539 CCDC180Q9P1Z9 1646 aa12.83□□□□□ -0.36
PSME4-204ENST00000466539 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
PSME4-204ENST00000466539 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
PSME4-204ENST00000466539 CHRDL2Q6WN34 429 aa12.66□□□□□ -0.38
PSME4-204ENST00000466539 PITPNM1O00562 1244 aa12.65□□□□□ -0.38
PSME4-204ENST00000466539 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
PSME4-204ENST00000466539 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
PSME4-204ENST00000466539 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
PSME4-204ENST00000466539 VASPP50552 380 aaPredicted RBP12.6□□□□□ -0.39
PSME4-204ENST00000466539 PRR29P0C7W0 189 aa12.51□□□□□ -0.41
PSME4-204ENST00000466539 IFNLR1Q8IU57 520 aaPredicted RBP12.5□□□□□ -0.41
PSME4-204ENST00000466539 MIER1Q8N108 512 aa12.48□□□□□ -0.41
PSME4-204ENST00000466539 CREBZFQ9NS37 354 aa12.45□□□□□ -0.42
PSME4-204ENST00000466539 PLCD3Q8N3E9 789 aa12.44□□□□□ -0.42
PSME4-204ENST00000466539 FXR2P51116 673 aaKnown RBP eCLIP12.39□□□□□ -0.432e-6■■□□□ 12.5
PSME4-204ENST00000466539 CHADLQ6NUI6 762 aa12.39□□□□□ -0.43
PSME4-204ENST00000466539 MNX1P50219 401 aaPredicted RBP12.36□□□□□ -0.43
PSME4-204ENST00000466539 PIP4P2Q8N4L2 257 aa12.34□□□□□ -0.43
PSME4-204ENST00000466539 KLHL34Q8N239 644 aa12.33□□□□□ -0.44
PSME4-204ENST00000466539 PRKAR2AP13861 404 aaKnown RBP12.31□□□□□ -0.44
PSME4-204ENST00000466539 RTN4Q9NQC3 1192 aaKnown RBP12.29□□□□□ -0.44
PSME4-204ENST00000466539 PLEKHG5O94827 1062 aa12.27□□□□□ -0.45
PSME4-204ENST00000466539 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
PSME4-204ENST00000466539 ZCCHC6Q5VYS8 1495 aaKnown RBP12.22□□□□□ -0.45
PSME4-204ENST00000466539 FARP1Q9Y4F1 1045 aaPredicted RBP12.22□□□□□ -0.45
PSME4-204ENST00000466539 ZBTB47Q9UFB7 747 aaPredicted RBP12.21□□□□□ -0.45
PSME4-204ENST00000466539 NUBP1P53384 320 aa12.2□□□□□ -0.46
PSME4-204ENST00000466539 SP7Q8TDD2 431 aaPredicted RBP12.2□□□□□ -0.46
PSME4-204ENST00000466539 AMER1Q5JTC6 1135 aaPredicted RBP12.18□□□□□ -0.46
PSME4-204ENST00000466539 DCAF1Q9Y4B6 1507 aa12.16□□□□□ -0.46
PSME4-204ENST00000466539 RASEFQ8IZ41 740 aa12.14□□□□□ -0.47
PSME4-204ENST00000466539 HAX1O00165 279 aa12.13□□□□□ -0.47
PSME4-204ENST00000466539 PKD2Q13563 968 aa12.13□□□□□ -0.47
PSME4-204ENST00000466539 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
PSME4-204ENST00000466539 MYO15BQ96JP2 1530 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms