RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 AEBP2Q6ZN18 517 aaPredicted RBP21.44■■□□□ 1.02
VPS41-211ENST00000466017 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
VPS41-211ENST00000466017 PHF23Q9BUL5 403 aaPredicted RBP18.27■□□□□ 0.52
VPS41-211ENST00000466017 SENP3Q9H4L4 574 aaPredicted RBP17.92■□□□□ 0.46
VPS41-211ENST00000466017 FOXD1Q16676 465 aa16.86■□□□□ 0.29
VPS41-211ENST00000466017 PLPPR3Q6T4P5 718 aa16.55■□□□□ 0.24
VPS41-211ENST00000466017 PPP6R1Q9UPN7 881 aa16.21■□□□□ 0.19
VPS41-211ENST00000466017 ADRA2BP18089 450 aa16.13■□□□□ 0.17
VPS41-211ENST00000466017 PIAS4Q8N2W9 510 aaPredicted RBP15.75■□□□□ 0.11
VPS41-211ENST00000466017 MSH5O43196 834 aa15.37■□□□□ 0.05
VPS41-211ENST00000466017 MAPK8IP2Q13387 824 aaPredicted RBP14.76□□□□□ -0.05
VPS41-211ENST00000466017 PPP4R3CPQ6ZMV5 832 aa14.67□□□□□ -0.06
VPS41-211ENST00000466017 POTEDQ86YR6 584 aa14.48□□□□□ -0.09
VPS41-211ENST00000466017 SCAF1Q9H7N4 1312 aaKnown RBP14.43□□□□□ -0.1
VPS41-211ENST00000466017 DMRT2Q9Y5R5 561 aa14.35□□□□□ -0.11
VPS41-211ENST00000466017 KCNA4P22459 653 aa14.24□□□□□ -0.13
VPS41-211ENST00000466017 CNKSR2Q8WXI2 1034 aa14.2□□□□□ -0.14
VPS41-211ENST00000466017 NPM3O75607 178 aaKnown RBP14.07□□□□□ -0.16
VPS41-211ENST00000466017 NCBP3Q53F19 620 aaKnown RBP14.04□□□□□ -0.16
VPS41-211ENST00000466017 HOXD11P31277 338 aaPredicted RBP14□□□□□ -0.17
VPS41-211ENST00000466017 RNF216Q9NWF9 866 aaPredicted RBP13.97□□□□□ -0.17
VPS41-211ENST00000466017 DCAF8L1A6NGE4 600 aa13.75□□□□□ -0.21
VPS41-211ENST00000466017 DNAJC5BQ9UF47 199 aa13.52□□□□□ -0.25
VPS41-211ENST00000466017 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
VPS41-211ENST00000466017 SLC4A1APQ9BWU0 796 aaKnown RBP13.4□□□□□ -0.26
VPS41-211ENST00000466017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.29□□□□□ -0.284e-6■□□□□ 8.4
VPS41-211ENST00000466017 RNF39Q9H2S5 420 aa13.29□□□□□ -0.28
VPS41-211ENST00000466017 ZBTB22O15209 634 aa13.19□□□□□ -0.3
VPS41-211ENST00000466017 U3KPZ7 1027 aaPredicted RBP13.18□□□□□ -0.3
VPS41-211ENST00000466017 CACNB1Q02641 598 aaPredicted RBP13.02□□□□□ -0.33
VPS41-211ENST00000466017 C1QBPQ07021 282 aaKnown RBP13.01□□□□□ -0.33
VPS41-211ENST00000466017 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
VPS41-211ENST00000466017 EHMT2Q96KQ7 1210 aa12.93□□□□□ -0.34
VPS41-211ENST00000466017 SPINK5Q9NQ38 1064 aaPredicted RBP12.92□□□□□ -0.34
VPS41-211ENST00000466017 CSRNP3Q8WYN3 585 aa12.91□□□□□ -0.34
VPS41-211ENST00000466017 MYCNP04198 464 aaPredicted RBP12.86□□□□□ -0.35
VPS41-211ENST00000466017 ATF5Q9Y2D1 282 aaPredicted RBP12.81□□□□□ -0.36
VPS41-211ENST00000466017 CAPN15O75808 1086 aa12.74□□□□□ -0.37
VPS41-211ENST00000466017 SAMD1Q6SPF0 538 aaPredicted RBP12.69□□□□□ -0.38
VPS41-211ENST00000466017 TRHP20396 242 aaPredicted RBP12.68□□□□□ -0.38
VPS41-211ENST00000466017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.66□□□□□ -0.38
VPS41-211ENST00000466017 HNRNPUL2Q1KMD3 747 aaKnown RBP12.66□□□□□ -0.38
VPS41-211ENST00000466017 DSG3P32926 999 aa12.62□□□□□ -0.39
VPS41-211ENST00000466017 NISCHQ9Y2I1 1504 aa12.59□□□□□ -0.39
VPS41-211ENST00000466017 ABCB7O75027 752 aa12.59□□□□□ -0.39
VPS41-211ENST00000466017 ZNF219Q9P2Y4 722 aaPredicted RBP12.51□□□□□ -0.41
VPS41-211ENST00000466017 APLP2Q06481 763 aa12.49□□□□□ -0.41
VPS41-211ENST00000466017 ATXN8OSP0DMR3 200 aa12.47□□□□□ -0.41
VPS41-211ENST00000466017 POLA2Q14181 598 aa12.45□□□□□ -0.42
VPS41-211ENST00000466017 MKRN4PQ13434 485 aaPredicted RBP12.19□□□□□ -0.46
VPS41-211ENST00000466017 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
VPS41-211ENST00000466017 ZBTB12Q9Y330 459 aaPredicted RBP11.97□□□□□ -0.49
VPS41-211ENST00000466017 FBLN2P98095 1184 aa11.94□□□□□ -0.5
VPS41-211ENST00000466017 RBM42Q9BTD8 480 aaKnown RBP11.8□□□□□ -0.52
VPS41-211ENST00000466017 SPDYE2BA6NHP3 402 aa11.75□□□□□ -0.53
VPS41-211ENST00000466017 SPDYE6P0CI01 402 aa11.75□□□□□ -0.53
VPS41-211ENST00000466017 SPDYE2Q495Y8 402 aa11.75□□□□□ -0.53
VPS41-211ENST00000466017 ZNF692Q9BU19 519 aaPredicted RBP11.75□□□□□ -0.53
VPS41-211ENST00000466017 SSUH2Q9Y2M2 353 aa11.73□□□□□ -0.53
VPS41-211ENST00000466017 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
VPS41-211ENST00000466017 REM2Q8IYK8 340 aaPredicted RBP11.71□□□□□ -0.53
VPS41-211ENST00000466017 SPDYE4A6NLX3 237 aa11.68□□□□□ -0.54
VPS41-211ENST00000466017 PABPN1Q86U42 306 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS41-211ENST00000466017 PITPNM1O00562 1244 aa11.6□□□□□ -0.55
VPS41-211ENST00000466017 FKBP8Q14318 412 aa11.59□□□□□ -0.55
VPS41-211ENST00000466017 CHRDL2Q6WN34 429 aa11.53□□□□□ -0.56
VPS41-211ENST00000466017 PROM2Q8N271 834 aa11.5□□□□□ -0.57
VPS41-211ENST00000466017 CLEC11AQ9Y240 323 aa11.5□□□□□ -0.57
VPS41-211ENST00000466017 SPDYE1Q8NFV5 336 aaPredicted RBP11.43□□□□□ -0.58
VPS41-211ENST00000466017 PIP4P2Q8N4L2 257 aa11.41□□□□□ -0.58
VPS41-211ENST00000466017 FXR2P51116 673 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS41-211ENST00000466017 POTEHQ6S545 545 aa11.38□□□□□ -0.59
VPS41-211ENST00000466017 CHADLQ6NUI6 762 aa11.35□□□□□ -0.59
VPS41-211ENST00000466017 PRR29P0C7W0 189 aa11.32□□□□□ -0.6
VPS41-211ENST00000466017 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
VPS41-211ENST00000466017 CREBZFQ9NS37 354 aa11.26□□□□□ -0.61
VPS41-211ENST00000466017 STAG3Q9UJ98 1225 aa11.21□□□□□ -0.61
VPS41-211ENST00000466017 MNX1P50219 401 aaPredicted RBP11.16□□□□□ -0.62
VPS41-211ENST00000466017 EVX2Q03828 476 aa11.16□□□□□ -0.62
VPS41-211ENST00000466017 FARP1Q9Y4F1 1045 aaPredicted RBP11.11□□□□□ -0.63
VPS41-211ENST00000466017 MIER1Q8N108 512 aa11.09□□□□□ -0.63
VPS41-211ENST00000466017 HAX1O00165 279 aa11.04□□□□□ -0.64
VPS41-211ENST00000466017 CCDC180Q9P1Z9 1646 aa11.03□□□□□ -0.64
VPS41-211ENST00000466017 VASPP50552 380 aaPredicted RBP11.02□□□□□ -0.65
VPS41-211ENST00000466017 FBXO3Q9UK99 471 aa11.02□□□□□ -0.65
VPS41-211ENST00000466017 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
VPS41-211ENST00000466017 PLCD3Q8N3E9 789 aa11□□□□□ -0.65
VPS41-211ENST00000466017 IFNLR1Q8IU57 520 aaPredicted RBP10.98□□□□□ -0.65
VPS41-211ENST00000466017 CD44P16070 742 aaKnown RBP10.91□□□□□ -0.66
VPS41-211ENST00000466017 RASEFQ8IZ41 740 aa10.91□□□□□ -0.66
VPS41-211ENST00000466017 NUBP1P53384 320 aa10.9□□□□□ -0.66
VPS41-211ENST00000466017 NPM1P06748 294 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS41-211ENST00000466017 TSPYL2Q9H2G4 693 aaPredicted RBP10.85□□□□□ -0.67
VPS41-211ENST00000466017 SP7Q8TDD2 431 aaPredicted RBP10.84□□□□□ -0.67
VPS41-211ENST00000466017 ZRANB1Q9UGI0 708 aa10.84□□□□□ -0.67
VPS41-211ENST00000466017 KLHL34Q8N239 644 aa10.83□□□□□ -0.68
VPS41-211ENST00000466017 PLEKHG5O94827 1062 aa10.81□□□□□ -0.68
VPS41-211ENST00000466017 PHF12Q96QT6 1004 aa10.81□□□□□ -0.68
VPS41-211ENST00000466017 GABBR2O75899 941 aa10.77□□□□□ -0.69
VPS41-211ENST00000466017 CCDC61Q9Y6R9 512 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms