RNA–Protein interactions for RNA: ENST00000464654.1

TM9SF3-203, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 5

Gene TM9SF3, Length 658 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-203ENST00000464654 AEBP2Q6ZN18 517 aaPredicted RBP22.35■■□□□ 1.17
TM9SF3-203ENST00000464654 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
TM9SF3-203ENST00000464654 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
TM9SF3-203ENST00000464654 PHF23Q9BUL5 403 aaPredicted RBP18.98■□□□□ 0.63
TM9SF3-203ENST00000464654 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
TM9SF3-203ENST00000464654 FOXD1Q16676 465 aa17.73■□□□□ 0.43
TM9SF3-203ENST00000464654 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
TM9SF3-203ENST00000464654 MSH5O43196 834 aa16.95■□□□□ 0.3
TM9SF3-203ENST00000464654 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
TM9SF3-203ENST00000464654 ADRA2BP18089 450 aa16.76■□□□□ 0.27
TM9SF3-203ENST00000464654 PIAS4Q8N2W9 510 aaPredicted RBP16.61■□□□□ 0.25
TM9SF3-203ENST00000464654 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
TM9SF3-203ENST00000464654 PPP4R3CPQ6ZMV5 832 aa15.36■□□□□ 0.05
TM9SF3-203ENST00000464654 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
TM9SF3-203ENST00000464654 DMRT2Q9Y5R5 561 aa15.19■□□□□ 0.02
TM9SF3-203ENST00000464654 CACNB1Q02641 598 aaPredicted RBP15.14■□□□□ 0.01
TM9SF3-203ENST00000464654 CNKSR2Q8WXI2 1034 aa15.02■□□□□ -0
TM9SF3-203ENST00000464654 NCBP3Q53F19 620 aaKnown RBP14.94□□□□□ -0.02
TM9SF3-203ENST00000464654 HOXD11P31277 338 aaPredicted RBP14.81□□□□□ -0.04
TM9SF3-203ENST00000464654 RNF216Q9NWF9 866 aaPredicted RBP14.8□□□□□ -0.04
TM9SF3-203ENST00000464654 KCNA4P22459 653 aa14.7□□□□□ -0.06
TM9SF3-203ENST00000464654 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
TM9SF3-203ENST00000464654 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
TM9SF3-203ENST00000464654 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
TM9SF3-203ENST00000464654 RNF39Q9H2S5 420 aa14.35□□□□□ -0.11
TM9SF3-203ENST00000464654 C1QBPQ07021 282 aaKnown RBP14.11□□□□□ -0.15
TM9SF3-203ENST00000464654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.04□□□□□ -0.16
TM9SF3-203ENST00000464654 SLC4A1APQ9BWU0 796 aaKnown RBP13.99□□□□□ -0.17
TM9SF3-203ENST00000464654 POTEHQ6S545 545 aa13.97□□□□□ -0.17
TM9SF3-203ENST00000464654 SLC4A2P04920 1241 aa13.9□□□□□ -0.18
TM9SF3-203ENST00000464654 U3KPZ7 1027 aaPredicted RBP13.79□□□□□ -0.2
TM9SF3-203ENST00000464654 FOXD4L1Q9NU39 408 aa13.65□□□□□ -0.22
TM9SF3-203ENST00000464654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
TM9SF3-203ENST00000464654 HNRNPUL2Q1KMD3 747 aaKnown RBP13.64□□□□□ -0.23
TM9SF3-203ENST00000464654 MYCNP04198 464 aaPredicted RBP13.59□□□□□ -0.23
TM9SF3-203ENST00000464654 APLP2Q06481 763 aa13.56□□□□□ -0.24
TM9SF3-203ENST00000464654 SAMD1Q6SPF0 538 aaPredicted RBP13.55□□□□□ -0.24
TM9SF3-203ENST00000464654 ZBTB22O15209 634 aa13.52□□□□□ -0.25
TM9SF3-203ENST00000464654 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
TM9SF3-203ENST00000464654 CAPN15O75808 1086 aa13.41□□□□□ -0.26
TM9SF3-203ENST00000464654 ZNF219Q9P2Y4 722 aaPredicted RBP13.36□□□□□ -0.27
TM9SF3-203ENST00000464654 DSG3P32926 999 aa13.28□□□□□ -0.28
TM9SF3-203ENST00000464654 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
TM9SF3-203ENST00000464654 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
TM9SF3-203ENST00000464654 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
TM9SF3-203ENST00000464654 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
TM9SF3-203ENST00000464654 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
TM9SF3-203ENST00000464654 ABCB7O75027 752 aa13.09□□□□□ -0.31
TM9SF3-203ENST00000464654 POLA2Q14181 598 aa13.04□□□□□ -0.32
TM9SF3-203ENST00000464654 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
TM9SF3-203ENST00000464654 RBM42Q9BTD8 480 aaKnown RBP12.73□□□□□ -0.37
TM9SF3-203ENST00000464654 FBLN2P98095 1184 aa12.71□□□□□ -0.37
TM9SF3-203ENST00000464654 CHRDL2Q6WN34 429 aa12.68□□□□□ -0.38
TM9SF3-203ENST00000464654 SP7Q8TDD2 431 aaPredicted RBP12.68□□□□□ -0.38
TM9SF3-203ENST00000464654 MKRN4PQ13434 485 aaPredicted RBP12.61□□□□□ -0.39
TM9SF3-203ENST00000464654 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
TM9SF3-203ENST00000464654 SPDYE2BA6NHP3 402 aa12.51□□□□□ -0.41
TM9SF3-203ENST00000464654 SPDYE6P0CI01 402 aa12.51□□□□□ -0.41
TM9SF3-203ENST00000464654 SPDYE2Q495Y8 402 aa12.51□□□□□ -0.41
TM9SF3-203ENST00000464654 AKT1S1Q96B36 256 aa12.5□□□□□ -0.41
TM9SF3-203ENST00000464654 SSUH2Q9Y2M2 353 aa12.38□□□□□ -0.43
TM9SF3-203ENST00000464654 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
TM9SF3-203ENST00000464654 REM2Q8IYK8 340 aaPredicted RBP12.34□□□□□ -0.43
TM9SF3-203ENST00000464654 HAX1O00165 279 aa12.27□□□□□ -0.45
TM9SF3-203ENST00000464654 SPDYE4A6NLX3 237 aa12.23□□□□□ -0.45
TM9SF3-203ENST00000464654 PABPN1Q86U42 306 aaKnown RBP eCLIP12.19□□□□□ -0.46
TM9SF3-203ENST00000464654 PITPNM1O00562 1244 aa12.18□□□□□ -0.46
TM9SF3-203ENST00000464654 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
TM9SF3-203ENST00000464654 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
TM9SF3-203ENST00000464654 PROM2Q8N271 834 aa12.07□□□□□ -0.48
TM9SF3-203ENST00000464654 CLEC11AQ9Y240 323 aa12.05□□□□□ -0.48
TM9SF3-203ENST00000464654 FXR2P51116 673 aaKnown RBP eCLIP12.04□□□□□ -0.48
TM9SF3-203ENST00000464654 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
TM9SF3-203ENST00000464654 FKBP8Q14318 412 aa11.98□□□□□ -0.49
TM9SF3-203ENST00000464654 PLSCR2Q9NRY7 297 aa11.97□□□□□ -0.49
TM9SF3-203ENST00000464654 PRR29P0C7W0 189 aa11.96□□□□□ -0.49
TM9SF3-203ENST00000464654 EVX2Q03828 476 aa11.96□□□□□ -0.49
TM9SF3-203ENST00000464654 LHX8Q68G74 356 aa11.9□□□□□ -0.5
TM9SF3-203ENST00000464654 PRKAR2AP13861 404 aaKnown RBP11.87□□□□□ -0.51
TM9SF3-203ENST00000464654 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
TM9SF3-203ENST00000464654 CREBZFQ9NS37 354 aa11.75□□□□□ -0.53
TM9SF3-203ENST00000464654 FBXO3Q9UK99 471 aa11.72□□□□□ -0.53
TM9SF3-203ENST00000464654 FARP1Q9Y4F1 1045 aaPredicted RBP11.71□□□□□ -0.53
TM9SF3-203ENST00000464654 GABBR2O75899 941 aa11.66□□□□□ -0.54
TM9SF3-203ENST00000464654 C19orf67A6NJJ6 358 aa11.64□□□□□ -0.55
TM9SF3-203ENST00000464654 PLEKHG5O94827 1062 aa11.63□□□□□ -0.55
TM9SF3-203ENST00000464654 MNX1P50219 401 aaPredicted RBP11.62□□□□□ -0.55
TM9SF3-203ENST00000464654 MIER1Q8N108 512 aa11.61□□□□□ -0.55
TM9SF3-203ENST00000464654 NPM1P06748 294 aaKnown RBP eCLIP11.6□□□□□ -0.55
TM9SF3-203ENST00000464654 PLCD3Q8N3E9 789 aa11.56□□□□□ -0.56
TM9SF3-203ENST00000464654 ZBTB47Q9UFB7 747 aaPredicted RBP11.55□□□□□ -0.56
TM9SF3-203ENST00000464654 CD44P16070 742 aaKnown RBP11.52□□□□□ -0.57
TM9SF3-203ENST00000464654 VASPP50552 380 aaPredicted RBP11.51□□□□□ -0.57
TM9SF3-203ENST00000464654 PAK3O75914 559 aaPredicted RBP11.45□□□□□ -0.58
TM9SF3-203ENST00000464654 CLCN6P51797 869 aa11.44□□□□□ -0.58
TM9SF3-203ENST00000464654 ZNF579Q8NAF0 562 aaKnown RBP11.41□□□□□ -0.58
TM9SF3-203ENST00000464654 ZRANB1Q9UGI0 708 aa11.41□□□□□ -0.58
TM9SF3-203ENST00000464654 POTEIP0CG38 1075 aa11.37□□□□□ -0.59
TM9SF3-203ENST00000464654 NUBP1P53384 320 aa11.36□□□□□ -0.59
TM9SF3-203ENST00000464654 RASEFQ8IZ41 740 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms