RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 AEBP2Q6ZN18 517 aaPredicted RBP21.77■■□□□ 1.08
CLK1-208ENST00000464454 CHIC1Q5VXU3 224 aa21.17■□□□□ 0.98
CLK1-208ENST00000464454 SENP3Q9H4L4 574 aaPredicted RBP18.86■□□□□ 0.61
CLK1-208ENST00000464454 PHF23Q9BUL5 403 aaPredicted RBP18.55■□□□□ 0.56
CLK1-208ENST00000464454 FOXD1Q16676 465 aa17.43■□□□□ 0.38
CLK1-208ENST00000464454 PLPPR3Q6T4P5 718 aa17.26■□□□□ 0.35
CLK1-208ENST00000464454 MSH5O43196 834 aa16.6■□□□□ 0.25
CLK1-208ENST00000464454 ADRA2BP18089 450 aa16.34■□□□□ 0.21
CLK1-208ENST00000464454 POTEDQ86YR6 584 aa16.33■□□□□ 0.2
CLK1-208ENST00000464454 PPP6R1Q9UPN7 881 aa16.33■□□□□ 0.2
CLK1-208ENST00000464454 PIAS4Q8N2W9 510 aaPredicted RBP16.31■□□□□ 0.2
CLK1-208ENST00000464454 PPP4R3CPQ6ZMV5 832 aa15.17■□□□□ 0.02
CLK1-208ENST00000464454 SCAF1Q9H7N4 1312 aaKnown RBP15.1■□□□□ 0.01
CLK1-208ENST00000464454 NCBP3Q53F19 620 aaKnown RBP14.87□□□□□ -0.03
CLK1-208ENST00000464454 DMRT2Q9Y5R5 561 aa14.87□□□□□ -0.03
CLK1-208ENST00000464454 KCNA4P22459 653 aa14.85□□□□□ -0.03
CLK1-208ENST00000464454 MAPK8IP2Q13387 824 aaPredicted RBP14.78□□□□□ -0.04
CLK1-208ENST00000464454 CNKSR2Q8WXI2 1034 aa14.77□□□□□ -0.05
CLK1-208ENST00000464454 NPM3O75607 178 aaKnown RBP14.56□□□□□ -0.08
CLK1-208ENST00000464454 RNF216Q9NWF9 866 aaPredicted RBP14.47□□□□□ -0.09
CLK1-208ENST00000464454 HOXD11P31277 338 aaPredicted RBP14.38□□□□□ -0.11
CLK1-208ENST00000464454 CACNB1Q02641 598 aaPredicted RBP14.26□□□□□ -0.13
CLK1-208ENST00000464454 DCAF8L1A6NGE4 600 aa14.21□□□□□ -0.13
CLK1-208ENST00000464454 SLC4A1APQ9BWU0 796 aaKnown RBP14.21□□□□□ -0.13
CLK1-208ENST00000464454 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
CLK1-208ENST00000464454 RNF39Q9H2S5 420 aa14.03□□□□□ -0.16
CLK1-208ENST00000464454 C1QBPQ07021 282 aaKnown RBP13.92□□□□□ -0.18
CLK1-208ENST00000464454 EHMT2Q96KQ7 1210 aa13.83□□□□□ -0.2
CLK1-208ENST00000464454 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.72□□□□□ -0.212e-9■■□□□ 13
CLK1-208ENST00000464454 FOXD4L1Q9NU39 408 aa13.72□□□□□ -0.21
CLK1-208ENST00000464454 SLC4A2P04920 1241 aa13.7□□□□□ -0.22
CLK1-208ENST00000464454 ZBTB22O15209 634 aa13.63□□□□□ -0.23
CLK1-208ENST00000464454 CSRNP3Q8WYN3 585 aa13.63□□□□□ -0.23
CLK1-208ENST00000464454 MYCNP04198 464 aaPredicted RBP13.52□□□□□ -0.25
CLK1-208ENST00000464454 U3KPZ7 1027 aaPredicted RBP13.46□□□□□ -0.25
CLK1-208ENST00000464454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.43□□□□□ -0.26
CLK1-208ENST00000464454 HNRNPUL2Q1KMD3 747 aaKnown RBP13.43□□□□□ -0.26
CLK1-208ENST00000464454 SAMD1Q6SPF0 538 aaPredicted RBP13.36□□□□□ -0.27
CLK1-208ENST00000464454 APLP2Q06481 763 aa13.31□□□□□ -0.28
CLK1-208ENST00000464454 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
CLK1-208ENST00000464454 CAPN15O75808 1086 aa13.1□□□□□ -0.31
CLK1-208ENST00000464454 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
CLK1-208ENST00000464454 DSG3P32926 999 aa13.04□□□□□ -0.32
CLK1-208ENST00000464454 SPINK5Q9NQ38 1064 aaPredicted RBP13.03□□□□□ -0.32
CLK1-208ENST00000464454 ATF5Q9Y2D1 282 aaPredicted RBP13.03□□□□□ -0.32
CLK1-208ENST00000464454 TRHP20396 242 aaPredicted RBP12.97□□□□□ -0.33
CLK1-208ENST00000464454 POTEHQ6S545 545 aa12.81□□□□□ -0.36
CLK1-208ENST00000464454 POLA2Q14181 598 aa12.78□□□□□ -0.36
CLK1-208ENST00000464454 ABCB7O75027 752 aa12.76□□□□□ -0.37
CLK1-208ENST00000464454 ZBTB12Q9Y330 459 aaPredicted RBP12.68□□□□□ -0.38
CLK1-208ENST00000464454 RBM42Q9BTD8 480 aaKnown RBP12.64□□□□□ -0.39
CLK1-208ENST00000464454 FBLN2P98095 1184 aa12.62□□□□□ -0.39
CLK1-208ENST00000464454 MKRN4PQ13434 485 aaPredicted RBP12.49□□□□□ -0.41
CLK1-208ENST00000464454 FKBP8Q14318 412 aa12.35□□□□□ -0.43
CLK1-208ENST00000464454 OSCARQ8IYS5 282 aa12.34□□□□□ -0.43
CLK1-208ENST00000464454 SPDYE4A6NLX3 237 aa12.31□□□□□ -0.44
CLK1-208ENST00000464454 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
CLK1-208ENST00000464454 SPDYE2BA6NHP3 402 aa12.29□□□□□ -0.44
CLK1-208ENST00000464454 SPDYE6P0CI01 402 aa12.29□□□□□ -0.44
CLK1-208ENST00000464454 SPDYE2Q495Y8 402 aa12.29□□□□□ -0.44
CLK1-208ENST00000464454 AKT1S1Q96B36 256 aa12.24□□□□□ -0.45
CLK1-208ENST00000464454 ZNF692Q9BU19 519 aaPredicted RBP12.22□□□□□ -0.45
CLK1-208ENST00000464454 SSUH2Q9Y2M2 353 aa12.17□□□□□ -0.46
CLK1-208ENST00000464454 PROM2Q8N271 834 aa12.1□□□□□ -0.47
CLK1-208ENST00000464454 PABPN1Q86U42 306 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLK1-208ENST00000464454 REM2Q8IYK8 340 aaPredicted RBP12.02□□□□□ -0.49
CLK1-208ENST00000464454 FBXO3Q9UK99 471 aa11.99□□□□□ -0.49
CLK1-208ENST00000464454 SP7Q8TDD2 431 aaPredicted RBP11.94□□□□□ -0.5
CLK1-208ENST00000464454 STAG3Q9UJ98 1225 aa11.94□□□□□ -0.5
CLK1-208ENST00000464454 SPDYE1Q8NFV5 336 aaPredicted RBP11.92□□□□□ -0.5
CLK1-208ENST00000464454 PIP4P2Q8N4L2 257 aa11.91□□□□□ -0.5
CLK1-208ENST00000464454 PITPNM1O00562 1244 aa11.88□□□□□ -0.51
CLK1-208ENST00000464454 FXR2P51116 673 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLK1-208ENST00000464454 CLEC11AQ9Y240 323 aa11.82□□□□□ -0.52
CLK1-208ENST00000464454 HAX1O00165 279 aa11.79□□□□□ -0.52
CLK1-208ENST00000464454 VASPP50552 380 aaPredicted RBP11.76□□□□□ -0.53
CLK1-208ENST00000464454 PRR29P0C7W0 189 aa11.75□□□□□ -0.53
CLK1-208ENST00000464454 PLEKHG5O94827 1062 aa11.7□□□□□ -0.54
CLK1-208ENST00000464454 PLCD3Q8N3E9 789 aa11.68□□□□□ -0.54
CLK1-208ENST00000464454 MIER1Q8N108 512 aa11.66□□□□□ -0.54
CLK1-208ENST00000464454 ZBTB47Q9UFB7 747 aaPredicted RBP11.62□□□□□ -0.55
CLK1-208ENST00000464454 PRKAR2AP13861 404 aaKnown RBP11.59□□□□□ -0.55
CLK1-208ENST00000464454 IFNLR1Q8IU57 520 aaPredicted RBP11.56□□□□□ -0.56
CLK1-208ENST00000464454 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
CLK1-208ENST00000464454 CREBZFQ9NS37 354 aa11.56□□□□□ -0.56
CLK1-208ENST00000464454 C19orf67A6NJJ6 358 aa11.48□□□□□ -0.57
CLK1-208ENST00000464454 CHADLQ6NUI6 762 aa11.47□□□□□ -0.57
CLK1-208ENST00000464454 SPOCK2Q92563 424 aa11.47□□□□□ -0.57
CLK1-208ENST00000464454 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
CLK1-208ENST00000464454 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
CLK1-208ENST00000464454 EVX2Q03828 476 aa11.44□□□□□ -0.58
CLK1-208ENST00000464454 FARP1Q9Y4F1 1045 aaPredicted RBP11.43□□□□□ -0.58
CLK1-208ENST00000464454 AMER1Q5JTC6 1135 aaPredicted RBP11.42□□□□□ -0.58
CLK1-208ENST00000464454 CLCN6P51797 869 aa11.37□□□□□ -0.59
CLK1-208ENST00000464454 NUBP1P53384 320 aa11.33□□□□□ -0.6
CLK1-208ENST00000464454 GABBR2O75899 941 aa11.32□□□□□ -0.6
CLK1-208ENST00000464454 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
CLK1-208ENST00000464454 GSE1Q14687 1217 aa11.3□□□□□ -0.6
CLK1-208ENST00000464454 RTN4Q9NQC3 1192 aaKnown RBP11.29□□□□□ -0.6
CLK1-208ENST00000464454 PAK3O75914 559 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms