RNA–Protein interactions for RNA: ENST00000464286.1

CLSTN1-204, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 563 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-204ENST00000464286 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
CLSTN1-204ENST00000464286 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
CLSTN1-204ENST00000464286 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
CLSTN1-204ENST00000464286 PHF23Q9BUL5 403 aaPredicted RBP19.5■□□□□ 0.71
CLSTN1-204ENST00000464286 FOXD1Q16676 465 aa18.32■□□□□ 0.52
CLSTN1-204ENST00000464286 PLPPR3Q6T4P5 718 aa17.81■□□□□ 0.44
CLSTN1-204ENST00000464286 PPP6R1Q9UPN7 881 aa17.34■□□□□ 0.37
CLSTN1-204ENST00000464286 ADRA2BP18089 450 aa17.28■□□□□ 0.36
CLSTN1-204ENST00000464286 PIAS4Q8N2W9 510 aaPredicted RBP17.15■□□□□ 0.34
CLSTN1-204ENST00000464286 MSH5O43196 834 aa17.01■□□□□ 0.31
CLSTN1-204ENST00000464286 POTEDQ86YR6 584 aa16.23■□□□□ 0.19
CLSTN1-204ENST00000464286 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
CLSTN1-204ENST00000464286 SCAF1Q9H7N4 1312 aaKnown RBP15.76■□□□□ 0.11
CLSTN1-204ENST00000464286 PPP4R3CPQ6ZMV5 832 aa15.66■□□□□ 0.1
CLSTN1-204ENST00000464286 DMRT2Q9Y5R5 561 aa15.63■□□□□ 0.09
CLSTN1-204ENST00000464286 CNKSR2Q8WXI2 1034 aa15.3■□□□□ 0.04
CLSTN1-204ENST00000464286 HOXD11P31277 338 aaPredicted RBP15.17■□□□□ 0.02
CLSTN1-204ENST00000464286 RNF216Q9NWF9 866 aaPredicted RBP15.11■□□□□ 0.01
CLSTN1-204ENST00000464286 NCBP3Q53F19 620 aaKnown RBP15.09■□□□□ 0.01
CLSTN1-204ENST00000464286 DCAF8L1A6NGE4 600 aa14.94□□□□□ -0.02
CLSTN1-204ENST00000464286 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
CLSTN1-204ENST00000464286 KCNA4P22459 653 aa14.85□□□□□ -0.03
CLSTN1-204ENST00000464286 DNAJC5BQ9UF47 199 aa14.59□□□□□ -0.07
CLSTN1-204ENST00000464286 RNF39Q9H2S5 420 aa14.56□□□□□ -0.08
CLSTN1-204ENST00000464286 CACNB1Q02641 598 aaPredicted RBP14.46□□□□□ -0.09
CLSTN1-204ENST00000464286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.41□□□□□ -0.15e-7■□□□□ 9.3
CLSTN1-204ENST00000464286 C1QBPQ07021 282 aaKnown RBP14.35□□□□□ -0.11
CLSTN1-204ENST00000464286 SLC4A2P04920 1241 aa14.21□□□□□ -0.13
CLSTN1-204ENST00000464286 U3KPZ7 1027 aaPredicted RBP14.17□□□□□ -0.14
CLSTN1-204ENST00000464286 SLC4A1APQ9BWU0 796 aaKnown RBP14.03□□□□□ -0.16
CLSTN1-204ENST00000464286 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
CLSTN1-204ENST00000464286 CAPN15O75808 1086 aa13.83□□□□□ -0.2
CLSTN1-204ENST00000464286 NISCHQ9Y2I1 1504 aa13.83□□□□□ -0.2
CLSTN1-204ENST00000464286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.79□□□□□ -0.2
CLSTN1-204ENST00000464286 HNRNPUL2Q1KMD3 747 aaKnown RBP13.79□□□□□ -0.2
CLSTN1-204ENST00000464286 MYCNP04198 464 aaPredicted RBP13.77□□□□□ -0.21
CLSTN1-204ENST00000464286 FOXD4L1Q9NU39 408 aa13.75□□□□□ -0.21
CLSTN1-204ENST00000464286 SAMD1Q6SPF0 538 aaPredicted RBP13.74□□□□□ -0.21
CLSTN1-204ENST00000464286 DSG3P32926 999 aa13.73□□□□□ -0.21
CLSTN1-204ENST00000464286 APLP2Q06481 763 aa13.73□□□□□ -0.21
CLSTN1-204ENST00000464286 ZBTB22O15209 634 aa13.67□□□□□ -0.22
CLSTN1-204ENST00000464286 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
CLSTN1-204ENST00000464286 ZNF219Q9P2Y4 722 aaPredicted RBP13.64□□□□□ -0.23
CLSTN1-204ENST00000464286 ABCB7O75027 752 aa13.54□□□□□ -0.24
CLSTN1-204ENST00000464286 ATF5Q9Y2D1 282 aaPredicted RBP13.48□□□□□ -0.25
CLSTN1-204ENST00000464286 POLA2Q14181 598 aa13.37□□□□□ -0.27
CLSTN1-204ENST00000464286 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
CLSTN1-204ENST00000464286 CSRNP3Q8WYN3 585 aa13.25□□□□□ -0.29
CLSTN1-204ENST00000464286 EHMT2Q96KQ7 1210 aa13.16□□□□□ -0.3
CLSTN1-204ENST00000464286 ZBTB12Q9Y330 459 aaPredicted RBP13.07□□□□□ -0.32
CLSTN1-204ENST00000464286 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
CLSTN1-204ENST00000464286 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
CLSTN1-204ENST00000464286 FBLN2P98095 1184 aa12.87□□□□□ -0.35
CLSTN1-204ENST00000464286 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
CLSTN1-204ENST00000464286 AKT1S1Q96B36 256 aa12.83□□□□□ -0.36
CLSTN1-204ENST00000464286 POTEHQ6S545 545 aa12.75□□□□□ -0.37
CLSTN1-204ENST00000464286 SPDYE2BA6NHP3 402 aa12.72□□□□□ -0.37
CLSTN1-204ENST00000464286 SPDYE6P0CI01 402 aa12.72□□□□□ -0.37
CLSTN1-204ENST00000464286 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
CLSTN1-204ENST00000464286 REM2Q8IYK8 340 aaPredicted RBP12.71□□□□□ -0.37
CLSTN1-204ENST00000464286 CHRDL2Q6WN34 429 aa12.68□□□□□ -0.38
CLSTN1-204ENST00000464286 ZNF692Q9BU19 519 aaPredicted RBP12.61□□□□□ -0.39
CLSTN1-204ENST00000464286 SSUH2Q9Y2M2 353 aa12.59□□□□□ -0.39
CLSTN1-204ENST00000464286 PITPNM1O00562 1244 aa12.57□□□□□ -0.4
CLSTN1-204ENST00000464286 PIP4P2Q8N4L2 257 aa12.45□□□□□ -0.42
CLSTN1-204ENST00000464286 PABPN1Q86U42 306 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLSTN1-204ENST00000464286 FXR2P51116 673 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLSTN1-204ENST00000464286 SPDYE1Q8NFV5 336 aaPredicted RBP12.43□□□□□ -0.42
CLSTN1-204ENST00000464286 CLEC11AQ9Y240 323 aa12.41□□□□□ -0.42
CLSTN1-204ENST00000464286 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
CLSTN1-204ENST00000464286 PRR29P0C7W0 189 aa12.24□□□□□ -0.45
CLSTN1-204ENST00000464286 PRKAR2AP13861 404 aaKnown RBP12.24□□□□□ -0.45
CLSTN1-204ENST00000464286 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
CLSTN1-204ENST00000464286 HAX1O00165 279 aa12.14□□□□□ -0.47
CLSTN1-204ENST00000464286 STAG3Q9UJ98 1225 aa12.13□□□□□ -0.47
CLSTN1-204ENST00000464286 PROM2Q8N271 834 aa12.11□□□□□ -0.47
CLSTN1-204ENST00000464286 SP7Q8TDD2 431 aaPredicted RBP12.07□□□□□ -0.48
CLSTN1-204ENST00000464286 EVX2Q03828 476 aa12.06□□□□□ -0.48
CLSTN1-204ENST00000464286 C19orf67A6NJJ6 358 aa12.02□□□□□ -0.49
CLSTN1-204ENST00000464286 CREBZFQ9NS37 354 aa12.02□□□□□ -0.49
CLSTN1-204ENST00000464286 FARP1Q9Y4F1 1045 aaPredicted RBP12□□□□□ -0.49
CLSTN1-204ENST00000464286 FKBP8Q14318 412 aa11.97□□□□□ -0.49
CLSTN1-204ENST00000464286 CD44P16070 742 aaKnown RBP11.86□□□□□ -0.51
CLSTN1-204ENST00000464286 MNX1P50219 401 aaPredicted RBP11.85□□□□□ -0.51
CLSTN1-204ENST00000464286 HRCP23327 699 aa11.84□□□□□ -0.51
CLSTN1-204ENST00000464286 CCDC180Q9P1Z9 1646 aa11.82□□□□□ -0.52
CLSTN1-204ENST00000464286 GABBR2O75899 941 aa11.78□□□□□ -0.52
CLSTN1-204ENST00000464286 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLSTN1-204ENST00000464286 ZCCHC6Q5VYS8 1495 aaKnown RBP11.76□□□□□ -0.53
CLSTN1-204ENST00000464286 MIER1Q8N108 512 aa11.74□□□□□ -0.53
CLSTN1-204ENST00000464286 ZRANB1Q9UGI0 708 aa11.73□□□□□ -0.53
CLSTN1-204ENST00000464286 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
CLSTN1-204ENST00000464286 SHROOM4Q9ULL8 1493 aa11.69□□□□□ -0.54
CLSTN1-204ENST00000464286 SUPT5HO00267 1087 aaKnown RBP11.68□□□□□ -0.54
CLSTN1-204ENST00000464286 PLEKHG5O94827 1062 aa11.67□□□□□ -0.54
CLSTN1-204ENST00000464286 PLCD3Q8N3E9 789 aa11.67□□□□□ -0.54
CLSTN1-204ENST00000464286 PELP1Q8IZL8 1130 aaKnown RBP11.66□□□□□ -0.54
CLSTN1-204ENST00000464286 PAK3O75914 559 aaPredicted RBP11.65□□□□□ -0.54
CLSTN1-204ENST00000464286 CLCN6P51797 869 aa11.65□□□□□ -0.54
CLSTN1-204ENST00000464286 DCAF1Q9Y4B6 1507 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms