RNA–Protein interactions for RNA: ENST00000464138.1

SSR3-203, Transcript of signal sequence receptor subunit 3, humanhuman

TSL 3

Gene SSR3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-203ENST00000464138 AEBP2Q6ZN18 517 aaPredicted RBP24.96■■□□□ 1.59
SSR3-203ENST00000464138 CHIC1Q5VXU3 224 aa24.92■■□□□ 1.58
SSR3-203ENST00000464138 PHF23Q9BUL5 403 aaPredicted RBP21.9■■□□□ 1.1
SSR3-203ENST00000464138 SENP3Q9H4L4 574 aaPredicted RBP21.25■□□□□ 0.99
SSR3-203ENST00000464138 PLPPR3Q6T4P5 718 aa20.5■□□□□ 0.87
SSR3-203ENST00000464138 FOXD1Q16676 465 aa19.57■□□□□ 0.72
SSR3-203ENST00000464138 ADRA2BP18089 450 aa19.18■□□□□ 0.66
SSR3-203ENST00000464138 PPP6R1Q9UPN7 881 aa19.15■□□□□ 0.66
SSR3-203ENST00000464138 PIAS4Q8N2W9 510 aaPredicted RBP18.61■□□□□ 0.57
SSR3-203ENST00000464138 KCNA4P22459 653 aa18.13■□□□□ 0.49
SSR3-203ENST00000464138 PPP4R3CPQ6ZMV5 832 aa18.06■□□□□ 0.48
SSR3-203ENST00000464138 MSH5O43196 834 aa17.98■□□□□ 0.47
SSR3-203ENST00000464138 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
SSR3-203ENST00000464138 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.42
SSR3-203ENST00000464138 CNKSR2Q8WXI2 1034 aa17.51■□□□□ 0.39
SSR3-203ENST00000464138 NPM3O75607 178 aaKnown RBP17.46■□□□□ 0.39
SSR3-203ENST00000464138 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
SSR3-203ENST00000464138 EHMT2Q96KQ7 1210 aa17.37■□□□□ 0.37
SSR3-203ENST00000464138 MAPK8IP2Q13387 824 aaPredicted RBP17.23■□□□□ 0.35
SSR3-203ENST00000464138 RNF216Q9NWF9 866 aaPredicted RBP17.04■□□□□ 0.32
SSR3-203ENST00000464138 DMRT2Q9Y5R5 561 aa17.01■□□□□ 0.31
SSR3-203ENST00000464138 DNAJC5BQ9UF47 199 aa16.99■□□□□ 0.31
SSR3-203ENST00000464138 CSRNP3Q8WYN3 585 aa16.97■□□□□ 0.31
SSR3-203ENST00000464138 HOXD11P31277 338 aaPredicted RBP16.84■□□□□ 0.29
SSR3-203ENST00000464138 ZBTB22O15209 634 aa16.65■□□□□ 0.26
SSR3-203ENST00000464138 FOXD4L1Q9NU39 408 aa16.62■□□□□ 0.25
SSR3-203ENST00000464138 SLC4A2P04920 1241 aa16.34■□□□□ 0.21
SSR3-203ENST00000464138 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
SSR3-203ENST00000464138 MYCNP04198 464 aaPredicted RBP16.18■□□□□ 0.18
SSR3-203ENST00000464138 ATXN8OSP0DMR3 200 aa16.07■□□□□ 0.16
SSR3-203ENST00000464138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.167e-7■■□□□ 13.2
SSR3-203ENST00000464138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
SSR3-203ENST00000464138 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
SSR3-203ENST00000464138 SAMD1Q6SPF0 538 aaPredicted RBP15.83■□□□□ 0.12
SSR3-203ENST00000464138 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
SSR3-203ENST00000464138 APLP2Q06481 763 aa15.66■□□□□ 0.1
SSR3-203ENST00000464138 ATF5Q9Y2D1 282 aaPredicted RBP15.58■□□□□ 0.08
SSR3-203ENST00000464138 POTEDQ86YR6 584 aa15.46■□□□□ 0.07
SSR3-203ENST00000464138 RNF39Q9H2S5 420 aa15.4■□□□□ 0.06
SSR3-203ENST00000464138 ZNF219Q9P2Y4 722 aaPredicted RBP15.39■□□□□ 0.05
SSR3-203ENST00000464138 FKBP8Q14318 412 aa15.34■□□□□ 0.05
SSR3-203ENST00000464138 C1QBPQ07021 282 aaKnown RBP15.3■□□□□ 0.04
SSR3-203ENST00000464138 SPINK5Q9NQ38 1064 aaPredicted RBP15.19■□□□□ 0.02
SSR3-203ENST00000464138 TRHP20396 242 aaPredicted RBP15.18■□□□□ 0.02
SSR3-203ENST00000464138 CAPN15O75808 1086 aa15.17■□□□□ 0.02
SSR3-203ENST00000464138 POLA2Q14181 598 aa15.07■□□□□ 0
SSR3-203ENST00000464138 FBLN2P98095 1184 aa15.06■□□□□ 0
SSR3-203ENST00000464138 ZBTB12Q9Y330 459 aaPredicted RBP14.97□□□□□ -0.01
SSR3-203ENST00000464138 MKRN4PQ13434 485 aaPredicted RBP14.96□□□□□ -0.01
SSR3-203ENST00000464138 SPDYE4A6NLX3 237 aa14.92□□□□□ -0.02
SSR3-203ENST00000464138 ABCB7O75027 752 aa14.87□□□□□ -0.03
SSR3-203ENST00000464138 AMER1Q5JTC6 1135 aaPredicted RBP14.87□□□□□ -0.03
SSR3-203ENST00000464138 DSG3P32926 999 aa14.79□□□□□ -0.04
SSR3-203ENST00000464138 FBXO3Q9UK99 471 aa14.79□□□□□ -0.04
SSR3-203ENST00000464138 PROM2Q8N271 834 aa14.74□□□□□ -0.05
SSR3-203ENST00000464138 RTN4Q9NQC3 1192 aaKnown RBP14.73□□□□□ -0.05
SSR3-203ENST00000464138 CACNB1Q02641 598 aaPredicted RBP14.66□□□□□ -0.06
SSR3-203ENST00000464138 SPDYE2BA6NHP3 402 aa14.54□□□□□ -0.08
SSR3-203ENST00000464138 SPDYE6P0CI01 402 aa14.54□□□□□ -0.08
SSR3-203ENST00000464138 SPDYE2Q495Y8 402 aa14.54□□□□□ -0.08
SSR3-203ENST00000464138 ZNF692Q9BU19 519 aaPredicted RBP14.53□□□□□ -0.08
SSR3-203ENST00000464138 OSCARQ8IYS5 282 aa14.5□□□□□ -0.09
SSR3-203ENST00000464138 VASPP50552 380 aaPredicted RBP14.49□□□□□ -0.09
SSR3-203ENST00000464138 SSUH2Q9Y2M2 353 aa14.44□□□□□ -0.1
SSR3-203ENST00000464138 STAG3Q9UJ98 1225 aa14.35□□□□□ -0.11
SSR3-203ENST00000464138 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
SSR3-203ENST00000464138 IFNLR1Q8IU57 520 aaPredicted RBP14.29□□□□□ -0.12
SSR3-203ENST00000464138 RBM42Q9BTD8 480 aaKnown RBP14.18□□□□□ -0.14
SSR3-203ENST00000464138 KLHL34Q8N239 644 aa14.15□□□□□ -0.14
SSR3-203ENST00000464138 PLCD3Q8N3E9 789 aa14.15□□□□□ -0.14
SSR3-203ENST00000464138 SLC24A1O60721 1099 aa14.12□□□□□ -0.15
SSR3-203ENST00000464138 MIER1Q8N108 512 aa14.11□□□□□ -0.15
SSR3-203ENST00000464138 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
SSR3-203ENST00000464138 SPOCK2Q92563 424 aa14.1□□□□□ -0.15
SSR3-203ENST00000464138 AKT1S1Q96B36 256 aa14.07□□□□□ -0.16
SSR3-203ENST00000464138 ZBTB47Q9UFB7 747 aaPredicted RBP14.06□□□□□ -0.16
SSR3-203ENST00000464138 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
SSR3-203ENST00000464138 PKD2Q13563 968 aa13.98□□□□□ -0.17
SSR3-203ENST00000464138 REM2Q8IYK8 340 aaPredicted RBP13.89□□□□□ -0.19
SSR3-203ENST00000464138 DCAF8L2P0C7V8 631 aa13.86□□□□□ -0.19
SSR3-203ENST00000464138 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
SSR3-203ENST00000464138 CLEC11AQ9Y240 323 aa13.85□□□□□ -0.19
SSR3-203ENST00000464138 PRR29P0C7W0 189 aa13.83□□□□□ -0.2
SSR3-203ENST00000464138 CIZ1Q9ULV3 898 aaPredicted RBP13.78□□□□□ -0.2
SSR3-203ENST00000464138 TRIM41Q8WV44 630 aa13.77□□□□□ -0.21
SSR3-203ENST00000464138 GSE1Q14687 1217 aa13.72□□□□□ -0.21
SSR3-203ENST00000464138 CREBZFQ9NS37 354 aa13.72□□□□□ -0.21
SSR3-203ENST00000464138 PITPNM1O00562 1244 aa13.7□□□□□ -0.22
SSR3-203ENST00000464138 PLCB2Q00722 1185 aa13.7□□□□□ -0.22
SSR3-203ENST00000464138 NUBP1P53384 320 aa13.67□□□□□ -0.22
SSR3-203ENST00000464138 RGL2O15211 777 aa13.65□□□□□ -0.22
SSR3-203ENST00000464138 NISCHQ9Y2I1 1504 aa13.64□□□□□ -0.23
SSR3-203ENST00000464138 MNX1P50219 401 aaPredicted RBP13.63□□□□□ -0.23
SSR3-203ENST00000464138 NPM1P06748 294 aaKnown RBP eCLIP13.61□□□□□ -0.23
SSR3-203ENST00000464138 FAM212AQ96EL1 285 aa13.61□□□□□ -0.23
SSR3-203ENST00000464138 DCAF8Q5TAQ9 597 aa13.6□□□□□ -0.23
SSR3-203ENST00000464138 BBXQ8WY36 941 aaPredicted RBP13.6□□□□□ -0.23
SSR3-203ENST00000464138 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.6□□□□□ -0.23
SSR3-203ENST00000464138 TAOK2Q9UL54 1235 aa13.53□□□□□ -0.24
SSR3-203ENST00000464138 CHGAP10645 457 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms