RNA–Protein interactions for RNA: ENST00000461603.5

LMBR1-215, Transcript of limb development membrane protein 1, humanhuman

TSL 4

Gene LMBR1, Length 612 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-215ENST00000461603 AEBP2Q6ZN18 517 aaPredicted RBP23.93■■□□□ 1.42
LMBR1-215ENST00000461603 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
LMBR1-215ENST00000461603 SENP3Q9H4L4 574 aaPredicted RBP20.51■□□□□ 0.87
LMBR1-215ENST00000461603 PHF23Q9BUL5 403 aaPredicted RBP20.48■□□□□ 0.87
LMBR1-215ENST00000461603 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
LMBR1-215ENST00000461603 FOXD1Q16676 465 aa18.91■□□□□ 0.62
LMBR1-215ENST00000461603 PPP6R1Q9UPN7 881 aa18.06■□□□□ 0.48
LMBR1-215ENST00000461603 ADRA2BP18089 450 aa18.03■□□□□ 0.48
LMBR1-215ENST00000461603 PIAS4Q8N2W9 510 aaPredicted RBP17.82■□□□□ 0.44
LMBR1-215ENST00000461603 MSH5O43196 834 aa17.64■□□□□ 0.41
LMBR1-215ENST00000461603 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
LMBR1-215ENST00000461603 PPP4R3CPQ6ZMV5 832 aa16.68■□□□□ 0.26
LMBR1-215ENST00000461603 NCBP3Q53F19 620 aaKnown RBP16.35■□□□□ 0.21
LMBR1-215ENST00000461603 MAPK8IP2Q13387 824 aaPredicted RBP16.34■□□□□ 0.21
LMBR1-215ENST00000461603 DMRT2Q9Y5R5 561 aa16.33■□□□□ 0.2
LMBR1-215ENST00000461603 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
LMBR1-215ENST00000461603 KCNA4P22459 653 aa16.11■□□□□ 0.17
LMBR1-215ENST00000461603 POTEDQ86YR6 584 aa16.05■□□□□ 0.16
LMBR1-215ENST00000461603 RNF216Q9NWF9 866 aaPredicted RBP16.04■□□□□ 0.16
LMBR1-215ENST00000461603 HOXD11P31277 338 aaPredicted RBP16■□□□□ 0.15
LMBR1-215ENST00000461603 NPM3O75607 178 aaKnown RBP15.96■□□□□ 0.15
LMBR1-215ENST00000461603 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
LMBR1-215ENST00000461603 DCAF8L1A6NGE4 600 aa15.45■□□□□ 0.06
LMBR1-215ENST00000461603 SLC4A1APQ9BWU0 796 aaKnown RBP15.4■□□□□ 0.06
LMBR1-215ENST00000461603 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.15■□□□□ 0.025e-7■□□□□ 9.5
LMBR1-215ENST00000461603 SLC4A2P04920 1241 aa15.07■□□□□ 0
LMBR1-215ENST00000461603 RNF39Q9H2S5 420 aa15.04■□□□□ -0
LMBR1-215ENST00000461603 FOXD4L1Q9NU39 408 aa14.97□□□□□ -0.01
LMBR1-215ENST00000461603 C1QBPQ07021 282 aaKnown RBP14.93□□□□□ -0.02
LMBR1-215ENST00000461603 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
LMBR1-215ENST00000461603 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
LMBR1-215ENST00000461603 U3KPZ7 1027 aaPredicted RBP14.87□□□□□ -0.03
LMBR1-215ENST00000461603 MYCNP04198 464 aaPredicted RBP14.84□□□□□ -0.03
LMBR1-215ENST00000461603 ZBTB22O15209 634 aa14.78□□□□□ -0.04
LMBR1-215ENST00000461603 APLP2Q06481 763 aa14.77□□□□□ -0.05
LMBR1-215ENST00000461603 SAMD1Q6SPF0 538 aaPredicted RBP14.75□□□□□ -0.05
LMBR1-215ENST00000461603 EHMT2Q96KQ7 1210 aa14.7□□□□□ -0.06
LMBR1-215ENST00000461603 CSRNP3Q8WYN3 585 aa14.69□□□□□ -0.06
LMBR1-215ENST00000461603 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
LMBR1-215ENST00000461603 ATXN8OSP0DMR3 200 aa14.59□□□□□ -0.07
LMBR1-215ENST00000461603 ZNF219Q9P2Y4 722 aaPredicted RBP14.47□□□□□ -0.09
LMBR1-215ENST00000461603 CAPN15O75808 1086 aa14.41□□□□□ -0.1
LMBR1-215ENST00000461603 SPINK5Q9NQ38 1064 aaPredicted RBP14.4□□□□□ -0.1
LMBR1-215ENST00000461603 TRHP20396 242 aaPredicted RBP14.28□□□□□ -0.12
LMBR1-215ENST00000461603 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
LMBR1-215ENST00000461603 DSG3P32926 999 aa14.24□□□□□ -0.13
LMBR1-215ENST00000461603 POLA2Q14181 598 aa14.09□□□□□ -0.15
LMBR1-215ENST00000461603 ZBTB12Q9Y330 459 aaPredicted RBP14.05□□□□□ -0.16
LMBR1-215ENST00000461603 ABCB7O75027 752 aa14.04□□□□□ -0.16
LMBR1-215ENST00000461603 NISCHQ9Y2I1 1504 aa13.88□□□□□ -0.19
LMBR1-215ENST00000461603 FBLN2P98095 1184 aa13.86□□□□□ -0.19
LMBR1-215ENST00000461603 RBM42Q9BTD8 480 aaKnown RBP13.71□□□□□ -0.21
LMBR1-215ENST00000461603 MKRN4PQ13434 485 aaPredicted RBP13.69□□□□□ -0.22
LMBR1-215ENST00000461603 SPDYE2BA6NHP3 402 aa13.6□□□□□ -0.23
LMBR1-215ENST00000461603 SPDYE6P0CI01 402 aa13.6□□□□□ -0.23
LMBR1-215ENST00000461603 SPDYE2Q495Y8 402 aa13.6□□□□□ -0.23
LMBR1-215ENST00000461603 OSCARQ8IYS5 282 aa13.56□□□□□ -0.24
LMBR1-215ENST00000461603 AKT1S1Q96B36 256 aa13.48□□□□□ -0.25
LMBR1-215ENST00000461603 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
LMBR1-215ENST00000461603 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
LMBR1-215ENST00000461603 SPDYE4A6NLX3 237 aa13.4□□□□□ -0.26
LMBR1-215ENST00000461603 PROM2Q8N271 834 aa13.27□□□□□ -0.29
LMBR1-215ENST00000461603 FKBP8Q14318 412 aa13.26□□□□□ -0.29
LMBR1-215ENST00000461603 REM2Q8IYK8 340 aaPredicted RBP13.25□□□□□ -0.29
LMBR1-215ENST00000461603 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
LMBR1-215ENST00000461603 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
LMBR1-215ENST00000461603 STAG3Q9UJ98 1225 aa13.17□□□□□ -0.3
LMBR1-215ENST00000461603 PITPNM1O00562 1244 aa13.07□□□□□ -0.32
LMBR1-215ENST00000461603 CHRDL2Q6WN34 429 aa13.05□□□□□ -0.32
LMBR1-215ENST00000461603 ABCC9O60706 1549 aa13.03□□□□□ -0.32
LMBR1-215ENST00000461603 FBXO3Q9UK99 471 aa13.02□□□□□ -0.33
LMBR1-215ENST00000461603 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
LMBR1-215ENST00000461603 PRR29P0C7W0 189 aa12.95□□□□□ -0.34
LMBR1-215ENST00000461603 FXR2P51116 673 aaKnown RBP eCLIP12.92□□□□□ -0.34
LMBR1-215ENST00000461603 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
LMBR1-215ENST00000461603 PLEKHG5O94827 1062 aa12.79□□□□□ -0.36
LMBR1-215ENST00000461603 PRKAR2AP13861 404 aaKnown RBP12.75□□□□□ -0.37
LMBR1-215ENST00000461603 POTEHQ6S545 545 aa12.73□□□□□ -0.37
LMBR1-215ENST00000461603 CREBZFQ9NS37 354 aa12.73□□□□□ -0.37
LMBR1-215ENST00000461603 ZBTB47Q9UFB7 747 aaPredicted RBP12.73□□□□□ -0.37
LMBR1-215ENST00000461603 VASPP50552 380 aaPredicted RBP12.71□□□□□ -0.37
LMBR1-215ENST00000461603 MIER1Q8N108 512 aa12.7□□□□□ -0.38
LMBR1-215ENST00000461603 PLCD3Q8N3E9 789 aa12.68□□□□□ -0.38
LMBR1-215ENST00000461603 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
LMBR1-215ENST00000461603 FARP1Q9Y4F1 1045 aaPredicted RBP12.64□□□□□ -0.39
LMBR1-215ENST00000461603 CHADLQ6NUI6 762 aa12.62□□□□□ -0.39
LMBR1-215ENST00000461603 MNX1P50219 401 aaPredicted RBP12.61□□□□□ -0.39
LMBR1-215ENST00000461603 CCDC180Q9P1Z9 1646 aa12.61□□□□□ -0.39
LMBR1-215ENST00000461603 IFNLR1Q8IU57 520 aaPredicted RBP12.49□□□□□ -0.41
LMBR1-215ENST00000461603 C19orf67A6NJJ6 358 aa12.48□□□□□ -0.41
LMBR1-215ENST00000461603 KLHL34Q8N239 644 aa12.47□□□□□ -0.41
LMBR1-215ENST00000461603 SPOCK2Q92563 424 aa12.43□□□□□ -0.42
LMBR1-215ENST00000461603 HAX1O00165 279 aa12.42□□□□□ -0.42
LMBR1-215ENST00000461603 PAK3O75914 559 aaPredicted RBP12.42□□□□□ -0.42
LMBR1-215ENST00000461603 NUBP1P53384 320 aa12.41□□□□□ -0.42
LMBR1-215ENST00000461603 CLCN6P51797 869 aa12.4□□□□□ -0.42
LMBR1-215ENST00000461603 CD44P16070 742 aaKnown RBP12.38□□□□□ -0.43
LMBR1-215ENST00000461603 FAM212AQ96EL1 285 aa12.36□□□□□ -0.43
LMBR1-215ENST00000461603 GSE1Q14687 1217 aa12.34□□□□□ -0.43
LMBR1-215ENST00000461603 RASEFQ8IZ41 740 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 257.7 ms