RNA–Protein interactions for RNA: ENST00000459004.1

SCARNA18-201, small Cajal body-specific RNA 18, humanhuman

BASIC

Gene SCARNA18, Length 134 nt, Biotype snoRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA18-201ENST00000459004 AEBP2Q6ZN18 517 aaPredicted RBP16.65■□□□□ 0.26
SCARNA18-201ENST00000459004 CHIC1Q5VXU3 224 aa16.3■□□□□ 0.2
SCARNA18-201ENST00000459004 PHF23Q9BUL5 403 aaPredicted RBP14.31□□□□□ -0.12
SCARNA18-201ENST00000459004 SENP3Q9H4L4 574 aaPredicted RBP14.16□□□□□ -0.14
SCARNA18-201ENST00000459004 PLPPR3Q6T4P5 718 aa13.25□□□□□ -0.29
SCARNA18-201ENST00000459004 FOXD1Q16676 465 aa13.12□□□□□ -0.31
SCARNA18-201ENST00000459004 PPP6R1Q9UPN7 881 aa12.62□□□□□ -0.39
SCARNA18-201ENST00000459004 ADRA2BP18089 450 aa12.61□□□□□ -0.39
SCARNA18-201ENST00000459004 PIAS4Q8N2W9 510 aaPredicted RBP12.37□□□□□ -0.43
SCARNA18-201ENST00000459004 MSH5O43196 834 aa12.13□□□□□ -0.47
SCARNA18-201ENST00000459004 PPP4R3CPQ6ZMV5 832 aa11.66□□□□□ -0.54
SCARNA18-201ENST00000459004 SCAF1Q9H7N4 1312 aaKnown RBP11.6□□□□□ -0.55
SCARNA18-201ENST00000459004 MAPK8IP2Q13387 824 aaPredicted RBP11.44□□□□□ -0.58
SCARNA18-201ENST00000459004 NCBP3Q53F19 620 aaKnown RBP11.39□□□□□ -0.59
SCARNA18-201ENST00000459004 KCNA4P22459 653 aa11.37□□□□□ -0.59
SCARNA18-201ENST00000459004 CNKSR2Q8WXI2 1034 aa11.35□□□□□ -0.59
SCARNA18-201ENST00000459004 DMRT2Q9Y5R5 561 aa11.3□□□□□ -0.6
SCARNA18-201ENST00000459004 NPM3O75607 178 aaKnown RBP11.18□□□□□ -0.62
SCARNA18-201ENST00000459004 RNF216Q9NWF9 866 aaPredicted RBP11.13□□□□□ -0.63
SCARNA18-201ENST00000459004 HOXD11P31277 338 aaPredicted RBP11.08□□□□□ -0.64
SCARNA18-201ENST00000459004 POTEDQ86YR6 584 aa11.01□□□□□ -0.65
SCARNA18-201ENST00000459004 DNAJC5BQ9UF47 199 aa10.89□□□□□ -0.67
SCARNA18-201ENST00000459004 SLC4A1APQ9BWU0 796 aaKnown RBP10.85□□□□□ -0.67
SCARNA18-201ENST00000459004 DCAF8L1A6NGE4 600 aa10.8□□□□□ -0.68
SCARNA18-201ENST00000459004 SLC4A2P04920 1241 aa10.56□□□□□ -0.72
SCARNA18-201ENST00000459004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.56□□□□□ -0.72
SCARNA18-201ENST00000459004 EHMT2Q96KQ7 1210 aa10.52□□□□□ -0.73
SCARNA18-201ENST00000459004 FOXD4L1Q9NU39 408 aa10.49□□□□□ -0.73
SCARNA18-201ENST00000459004 ZBTB22O15209 634 aa10.45□□□□□ -0.74
SCARNA18-201ENST00000459004 CSRNP3Q8WYN3 585 aa10.42□□□□□ -0.74
SCARNA18-201ENST00000459004 RNF39Q9H2S5 420 aa10.37□□□□□ -0.75
SCARNA18-201ENST00000459004 U3KPZ7 1027 aaPredicted RBP10.37□□□□□ -0.75
SCARNA18-201ENST00000459004 MYCNP04198 464 aaPredicted RBP10.34□□□□□ -0.75
SCARNA18-201ENST00000459004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.28□□□□□ -0.76
SCARNA18-201ENST00000459004 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
SCARNA18-201ENST00000459004 C1QBPQ07021 282 aaKnown RBP10.27□□□□□ -0.77
SCARNA18-201ENST00000459004 SAMD1Q6SPF0 538 aaPredicted RBP10.23□□□□□ -0.77
SCARNA18-201ENST00000459004 APLP2Q06481 763 aa10.18□□□□□ -0.78
SCARNA18-201ENST00000459004 ATXN8OSP0DMR3 200 aa10.15□□□□□ -0.78
SCARNA18-201ENST00000459004 CACNB1Q02641 598 aaPredicted RBP10.11□□□□□ -0.79
SCARNA18-201ENST00000459004 SPINK5Q9NQ38 1064 aaPredicted RBP10.06□□□□□ -0.8
SCARNA18-201ENST00000459004 CAPN15O75808 1086 aa10.05□□□□□ -0.8
SCARNA18-201ENST00000459004 ATF5Q9Y2D1 282 aaPredicted RBP10.04□□□□□ -0.8
SCARNA18-201ENST00000459004 ZNF219Q9P2Y4 722 aaPredicted RBP10.02□□□□□ -0.81
SCARNA18-201ENST00000459004 TRHP20396 242 aaPredicted RBP10□□□□□ -0.81
SCARNA18-201ENST00000459004 DSG3P32926 999 aa9.88□□□□□ -0.83
SCARNA18-201ENST00000459004 ABCB7O75027 752 aa9.84□□□□□ -0.83
SCARNA18-201ENST00000459004 POLA2Q14181 598 aa9.84□□□□□ -0.83
SCARNA18-201ENST00000459004 ZBTB12Q9Y330 459 aaPredicted RBP9.7□□□□□ -0.86
SCARNA18-201ENST00000459004 FBLN2P98095 1184 aa9.66□□□□□ -0.86
SCARNA18-201ENST00000459004 MKRN4PQ13434 485 aaPredicted RBP9.61□□□□□ -0.87
SCARNA18-201ENST00000459004 OSCARQ8IYS5 282 aa9.48□□□□□ -0.89
SCARNA18-201ENST00000459004 SPDYE2BA6NHP3 402 aa9.43□□□□□ -0.9
SCARNA18-201ENST00000459004 SPDYE6P0CI01 402 aa9.43□□□□□ -0.9
SCARNA18-201ENST00000459004 SPDYE2Q495Y8 402 aa9.43□□□□□ -0.9
SCARNA18-201ENST00000459004 RBM42Q9BTD8 480 aaKnown RBP9.43□□□□□ -0.9
SCARNA18-201ENST00000459004 SPDYE4A6NLX3 237 aa9.42□□□□□ -0.9
SCARNA18-201ENST00000459004 FKBP8Q14318 412 aa9.42□□□□□ -0.9
SCARNA18-201ENST00000459004 ZNF692Q9BU19 519 aaPredicted RBP9.39□□□□□ -0.91
SCARNA18-201ENST00000459004 SSUH2Q9Y2M2 353 aa9.34□□□□□ -0.91
SCARNA18-201ENST00000459004 AKT1S1Q96B36 256 aa9.32□□□□□ -0.92
SCARNA18-201ENST00000459004 PROM2Q8N271 834 aa9.26□□□□□ -0.93
SCARNA18-201ENST00000459004 PABPN1Q86U42 306 aaKnown RBP eCLIP9.25□□□□□ -0.93
SCARNA18-201ENST00000459004 REM2Q8IYK8 340 aaPredicted RBP9.21□□□□□ -0.94
SCARNA18-201ENST00000459004 SPDYE1Q8NFV5 336 aaPredicted RBP9.15□□□□□ -0.94
SCARNA18-201ENST00000459004 STAG3Q9UJ98 1225 aa9.14□□□□□ -0.95
SCARNA18-201ENST00000459004 FBXO3Q9UK99 471 aa9.12□□□□□ -0.95
SCARNA18-201ENST00000459004 CLEC11AQ9Y240 323 aa9.1□□□□□ -0.95
SCARNA18-201ENST00000459004 PITPNM1O00562 1244 aa9.09□□□□□ -0.95
SCARNA18-201ENST00000459004 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
SCARNA18-201ENST00000459004 CHRDL2Q6WN34 429 aa9.01□□□□□ -0.97
SCARNA18-201ENST00000459004 VASPP50552 380 aaPredicted RBP8.96□□□□□ -0.98
SCARNA18-201ENST00000459004 FXR2P51116 673 aaKnown RBP eCLIP8.94□□□□□ -0.98
SCARNA18-201ENST00000459004 MIER1Q8N108 512 aa8.94□□□□□ -0.98
SCARNA18-201ENST00000459004 PLCD3Q8N3E9 789 aa8.92□□□□□ -0.98
SCARNA18-201ENST00000459004 PLEKHG5O94827 1062 aa8.91□□□□□ -0.98
SCARNA18-201ENST00000459004 PIP4P2Q8N4L2 257 aa8.9□□□□□ -0.98
SCARNA18-201ENST00000459004 CREBZFQ9NS37 354 aa8.9□□□□□ -0.98
SCARNA18-201ENST00000459004 PRKAR2AP13861 404 aaKnown RBP8.87□□□□□ -0.99
SCARNA18-201ENST00000459004 CHADLQ6NUI6 762 aa8.86□□□□□ -0.99
SCARNA18-201ENST00000459004 ZBTB47Q9UFB7 747 aaPredicted RBP8.85□□□□□ -0.99
SCARNA18-201ENST00000459004 IFNLR1Q8IU57 520 aaPredicted RBP8.84□□□□□ -0.99
SCARNA18-201ENST00000459004 KLHL34Q8N239 644 aa8.83□□□□□ -1
SCARNA18-201ENST00000459004 MNX1P50219 401 aaPredicted RBP8.8□□□□□ -1
SCARNA18-201ENST00000459004 FARP1Q9Y4F1 1045 aaPredicted RBP8.8□□□□□ -1
SCARNA18-201ENST00000459004 NPM1P06748 294 aaKnown RBP eCLIP8.78□□□□□ -1
SCARNA18-201ENST00000459004 SPOCK2Q92563 424 aa8.75□□□□□ -1.01
SCARNA18-201ENST00000459004 POTEHQ6S545 545 aa8.73□□□□□ -1.01
SCARNA18-201ENST00000459004 NUBP1P53384 320 aa8.7□□□□□ -1.02
SCARNA18-201ENST00000459004 RASEFQ8IZ41 740 aa8.65□□□□□ -1.02
SCARNA18-201ENST00000459004 C19orf67A6NJJ6 358 aa8.64□□□□□ -1.03
SCARNA18-201ENST00000459004 GSE1Q14687 1217 aa8.63□□□□□ -1.03
SCARNA18-201ENST00000459004 DCAF8Q5TAQ9 597 aa8.63□□□□□ -1.03
SCARNA18-201ENST00000459004 FAM212AQ96EL1 285 aa8.63□□□□□ -1.03
SCARNA18-201ENST00000459004 HAX1O00165 279 aa8.62□□□□□ -1.03
SCARNA18-201ENST00000459004 PAK3O75914 559 aaPredicted RBP8.62□□□□□ -1.03
SCARNA18-201ENST00000459004 CD44P16070 742 aaKnown RBP8.62□□□□□ -1.03
SCARNA18-201ENST00000459004 AMER1Q5JTC6 1135 aaPredicted RBP8.61□□□□□ -1.03
SCARNA18-201ENST00000459004 TSPYL2Q9H2G4 693 aaPredicted RBP8.61□□□□□ -1.03
SCARNA18-201ENST00000459004 CIZ1Q9ULV3 898 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms