RNA–Protein interactions for RNA: ENST00000456040.1

R3HDM1-212, Transcript of R3H domain containing 1, humanhuman

TSL 5

Gene R3HDM1, Length 851 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-212ENST00000456040 AEBP2Q6ZN18 517 aaPredicted RBP26.09■■□□□ 1.77
R3HDM1-212ENST00000456040 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
R3HDM1-212ENST00000456040 SENP3Q9H4L4 574 aaPredicted RBP22.53■■□□□ 1.2
R3HDM1-212ENST00000456040 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
R3HDM1-212ENST00000456040 FOXD1Q16676 465 aa20.9■□□□□ 0.94
R3HDM1-212ENST00000456040 MSH5O43196 834 aa19.85■□□□□ 0.77
R3HDM1-212ENST00000456040 POTEDQ86YR6 584 aa19.73■□□□□ 0.75
R3HDM1-212ENST00000456040 PLPPR3Q6T4P5 718 aa19.64■□□□□ 0.73
R3HDM1-212ENST00000456040 PIAS4Q8N2W9 510 aaPredicted RBP19.56■□□□□ 0.72
R3HDM1-212ENST00000456040 PPP6R1Q9UPN7 881 aa19.25■□□□□ 0.67
R3HDM1-212ENST00000456040 ADRA2BP18089 450 aa19.24■□□□□ 0.67
R3HDM1-212ENST00000456040 SCAF1Q9H7N4 1312 aaKnown RBP17.85■□□□□ 0.45
R3HDM1-212ENST00000456040 DMRT2Q9Y5R5 561 aa17.75■□□□□ 0.43
R3HDM1-212ENST00000456040 MAPK8IP2Q13387 824 aaPredicted RBP17.73■□□□□ 0.43
R3HDM1-212ENST00000456040 CACNB1Q02641 598 aaPredicted RBP17.22■□□□□ 0.35
R3HDM1-212ENST00000456040 DCAF8L1A6NGE4 600 aa17.19■□□□□ 0.34
R3HDM1-212ENST00000456040 PPP4R3CPQ6ZMV5 832 aa17.12■□□□□ 0.33
R3HDM1-212ENST00000456040 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
R3HDM1-212ENST00000456040 CNKSR2Q8WXI2 1034 aa16.91■□□□□ 0.3
R3HDM1-212ENST00000456040 RNF216Q9NWF9 866 aaPredicted RBP16.82■□□□□ 0.28
R3HDM1-212ENST00000456040 RNF39Q9H2S5 420 aa16.79■□□□□ 0.28
R3HDM1-212ENST00000456040 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
R3HDM1-212ENST00000456040 NCBP3Q53F19 620 aaKnown RBP16.53■□□□□ 0.24
R3HDM1-212ENST00000456040 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
R3HDM1-212ENST00000456040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.31■□□□□ 0.26e-8■■■□□ 17.7
R3HDM1-212ENST00000456040 NPM3O75607 178 aaKnown RBP16.08■□□□□ 0.16
R3HDM1-212ENST00000456040 CAPN15O75808 1086 aa15.77■□□□□ 0.12
R3HDM1-212ENST00000456040 U3KPZ7 1027 aaPredicted RBP15.76■□□□□ 0.11
R3HDM1-212ENST00000456040 DSG3P32926 999 aa15.62■□□□□ 0.09
R3HDM1-212ENST00000456040 SPINK5Q9NQ38 1064 aaPredicted RBP15.62■□□□□ 0.09
R3HDM1-212ENST00000456040 APLP2Q06481 763 aa15.59■□□□□ 0.09
R3HDM1-212ENST00000456040 KCNA4P22459 653 aa15.49■□□□□ 0.07
R3HDM1-212ENST00000456040 POTEHQ6S545 545 aa15.47■□□□□ 0.07
R3HDM1-212ENST00000456040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.46■□□□□ 0.07
R3HDM1-212ENST00000456040 HNRNPUL2Q1KMD3 747 aaKnown RBP15.46■□□□□ 0.07
R3HDM1-212ENST00000456040 TRHP20396 242 aaPredicted RBP15.42■□□□□ 0.06
R3HDM1-212ENST00000456040 ZNF219Q9P2Y4 722 aaPredicted RBP15.42■□□□□ 0.06
R3HDM1-212ENST00000456040 SLC4A2P04920 1241 aa15.37■□□□□ 0.05
R3HDM1-212ENST00000456040 SAMD1Q6SPF0 538 aaPredicted RBP15.3■□□□□ 0.04
R3HDM1-212ENST00000456040 ABCB7O75027 752 aa15.29■□□□□ 0.04
R3HDM1-212ENST00000456040 RBM42Q9BTD8 480 aaKnown RBP15.08■□□□□ 0
R3HDM1-212ENST00000456040 MYCNP04198 464 aaPredicted RBP14.98□□□□□ -0.01
R3HDM1-212ENST00000456040 POLA2Q14181 598 aa14.9□□□□□ -0.02
R3HDM1-212ENST00000456040 CHRDL2Q6WN34 429 aa14.77□□□□□ -0.05
R3HDM1-212ENST00000456040 ZBTB12Q9Y330 459 aaPredicted RBP14.71□□□□□ -0.05
R3HDM1-212ENST00000456040 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
R3HDM1-212ENST00000456040 FOXD4L1Q9NU39 408 aa14.64□□□□□ -0.07
R3HDM1-212ENST00000456040 AKT1S1Q96B36 256 aa14.6□□□□□ -0.07
R3HDM1-212ENST00000456040 ATF5Q9Y2D1 282 aaPredicted RBP14.48□□□□□ -0.09
R3HDM1-212ENST00000456040 REM2Q8IYK8 340 aaPredicted RBP14.41□□□□□ -0.1
R3HDM1-212ENST00000456040 OSCARQ8IYS5 282 aa14.39□□□□□ -0.11
R3HDM1-212ENST00000456040 SP7Q8TDD2 431 aaPredicted RBP14.37□□□□□ -0.11
R3HDM1-212ENST00000456040 PIP4P2Q8N4L2 257 aa14.31□□□□□ -0.12
R3HDM1-212ENST00000456040 ATXN8OSP0DMR3 200 aa14.26□□□□□ -0.13
R3HDM1-212ENST00000456040 HAX1O00165 279 aa14.25□□□□□ -0.13
R3HDM1-212ENST00000456040 PITPNM1O00562 1244 aa14.23□□□□□ -0.13
R3HDM1-212ENST00000456040 FBLN2P98095 1184 aa14.22□□□□□ -0.13
R3HDM1-212ENST00000456040 FXR2P51116 673 aaKnown RBP eCLIP14.17□□□□□ -0.14
R3HDM1-212ENST00000456040 SPDYE2BA6NHP3 402 aa14.15□□□□□ -0.14
R3HDM1-212ENST00000456040 SPDYE6P0CI01 402 aa14.15□□□□□ -0.14
R3HDM1-212ENST00000456040 SPDYE2Q495Y8 402 aa14.15□□□□□ -0.14
R3HDM1-212ENST00000456040 ZBTB22O15209 634 aa14.12□□□□□ -0.15
R3HDM1-212ENST00000456040 SPDYE1Q8NFV5 336 aaPredicted RBP14.01□□□□□ -0.17
R3HDM1-212ENST00000456040 CLEC11AQ9Y240 323 aa14□□□□□ -0.17
R3HDM1-212ENST00000456040 ZNF692Q9BU19 519 aaPredicted RBP13.95□□□□□ -0.18
R3HDM1-212ENST00000456040 PRKAR2AP13861 404 aaKnown RBP13.93□□□□□ -0.18
R3HDM1-212ENST00000456040 EVX2Q03828 476 aa13.81□□□□□ -0.2
R3HDM1-212ENST00000456040 MKRN4PQ13434 485 aaPredicted RBP13.81□□□□□ -0.2
R3HDM1-212ENST00000456040 SSUH2Q9Y2M2 353 aa13.81□□□□□ -0.2
R3HDM1-212ENST00000456040 PRR29P0C7W0 189 aa13.74□□□□□ -0.21
R3HDM1-212ENST00000456040 C19orf67A6NJJ6 358 aa13.73□□□□□ -0.21
R3HDM1-212ENST00000456040 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
R3HDM1-212ENST00000456040 CHADLQ6NUI6 762 aa13.64□□□□□ -0.23
R3HDM1-212ENST00000456040 GABBR2O75899 941 aa13.62□□□□□ -0.23
R3HDM1-212ENST00000456040 LHX8Q68G74 356 aa13.49□□□□□ -0.25
R3HDM1-212ENST00000456040 CD44P16070 742 aaKnown RBP13.48□□□□□ -0.25
R3HDM1-212ENST00000456040 CLCN6P51797 869 aa13.48□□□□□ -0.25
R3HDM1-212ENST00000456040 FARP1Q9Y4F1 1045 aaPredicted RBP13.46□□□□□ -0.25
R3HDM1-212ENST00000456040 STAG3Q9UJ98 1225 aa13.37□□□□□ -0.27
R3HDM1-212ENST00000456040 DCBLD2Q96PD2 775 aa13.33□□□□□ -0.28
R3HDM1-212ENST00000456040 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
R3HDM1-212ENST00000456040 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
R3HDM1-212ENST00000456040 ZRANB1Q9UGI0 708 aa13.26□□□□□ -0.29
R3HDM1-212ENST00000456040 PAK3O75914 559 aaPredicted RBP13.22□□□□□ -0.29
R3HDM1-212ENST00000456040 POTEIP0CG38 1075 aa13.21□□□□□ -0.29
R3HDM1-212ENST00000456040 ZNF579Q8NAF0 562 aaKnown RBP13.21□□□□□ -0.29
R3HDM1-212ENST00000456040 CREBZFQ9NS37 354 aa13.18□□□□□ -0.3
R3HDM1-212ENST00000456040 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
R3HDM1-212ENST00000456040 NPM1P06748 294 aaKnown RBP eCLIP13.13□□□□□ -0.31
R3HDM1-212ENST00000456040 GALR2O43603 387 aaPredicted RBP13.03□□□□□ -0.32
R3HDM1-212ENST00000456040 PHF12Q96QT6 1004 aa12.96□□□□□ -0.33
R3HDM1-212ENST00000456040 PLSCR2Q9NRY7 297 aa12.93□□□□□ -0.34
R3HDM1-212ENST00000456040 MNX1P50219 401 aaPredicted RBP12.85□□□□□ -0.35
R3HDM1-212ENST00000456040 OTUD5Q96G74 571 aa12.85□□□□□ -0.35
R3HDM1-212ENST00000456040 PLEKHG5O94827 1062 aa12.84□□□□□ -0.35
R3HDM1-212ENST00000456040 SLC39A7Q92504 469 aa12.81□□□□□ -0.36
R3HDM1-212ENST00000456040 C7P10643 843 aa12.79□□□□□ -0.36
R3HDM1-212ENST00000456040 TSPYL2Q9H2G4 693 aaPredicted RBP12.78□□□□□ -0.36
R3HDM1-212ENST00000456040 MAMSTRQ6ZN01 415 aa12.77□□□□□ -0.37
R3HDM1-212ENST00000456040 MS4A3Q96HJ5 214 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms