RNA–Protein interactions for RNA: ENST00000455362.1

HMGB1P4-201, Transcript of high mobility group box 1 pseudogene 4, humanhuman

BASIC

Gene HMGB1P4, Length 567 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P4-201ENST00000455362 AEBP2Q6ZN18 517 aaPredicted RBP16.75■□□□□ 0.27
HMGB1P4-201ENST00000455362 CHIC1Q5VXU3 224 aa16.2■□□□□ 0.18
HMGB1P4-201ENST00000455362 PHF23Q9BUL5 403 aaPredicted RBP14.34□□□□□ -0.11
HMGB1P4-201ENST00000455362 SENP3Q9H4L4 574 aaPredicted RBP14.05□□□□□ -0.16
HMGB1P4-201ENST00000455362 FOXD1Q16676 465 aa13.16□□□□□ -0.3
HMGB1P4-201ENST00000455362 PLPPR3Q6T4P5 718 aa13.04□□□□□ -0.32
HMGB1P4-201ENST00000455362 POTEDQ86YR6 584 aa12.81□□□□□ -0.36
HMGB1P4-201ENST00000455362 PPP6R1Q9UPN7 881 aa12.68□□□□□ -0.38
HMGB1P4-201ENST00000455362 ADRA2BP18089 450 aa12.58□□□□□ -0.4
HMGB1P4-201ENST00000455362 PIAS4Q8N2W9 510 aaPredicted RBP12.27□□□□□ -0.45
HMGB1P4-201ENST00000455362 MSH5O43196 834 aa12.03□□□□□ -0.48
HMGB1P4-201ENST00000455362 EHMT2Q96KQ7 1210 aa11.71□□□□□ -0.53
HMGB1P4-201ENST00000455362 KCNA4P22459 653 aa11.57□□□□□ -0.56
HMGB1P4-201ENST00000455362 NISCHQ9Y2I1 1504 aa11.56□□□□□ -0.56
HMGB1P4-201ENST00000455362 PPP4R3CPQ6ZMV5 832 aa11.53□□□□□ -0.56
HMGB1P4-201ENST00000455362 MAPK8IP2Q13387 824 aaPredicted RBP11.47□□□□□ -0.57
HMGB1P4-201ENST00000455362 SCAF1Q9H7N4 1312 aaKnown RBP11.35□□□□□ -0.59
HMGB1P4-201ENST00000455362 DMRT2Q9Y5R5 561 aa11.27□□□□□ -0.61
HMGB1P4-201ENST00000455362 CNKSR2Q8WXI2 1034 aa11.2□□□□□ -0.62
HMGB1P4-201ENST00000455362 SLC4A1APQ9BWU0 796 aaKnown RBP11.2□□□□□ -0.62
HMGB1P4-201ENST00000455362 NCBP3Q53F19 620 aaKnown RBP11.16□□□□□ -0.62
HMGB1P4-201ENST00000455362 SLC24A1O60721 1099 aa11.1□□□□□ -0.63
HMGB1P4-201ENST00000455362 CSRNP3Q8WYN3 585 aa11.09□□□□□ -0.63
HMGB1P4-201ENST00000455362 NPM3O75607 178 aaKnown RBP11.07□□□□□ -0.64
HMGB1P4-201ENST00000455362 HOXD11P31277 338 aaPredicted RBP11.05□□□□□ -0.64
HMGB1P4-201ENST00000455362 RNF216Q9NWF9 866 aaPredicted RBP11.02□□□□□ -0.65
HMGB1P4-201ENST00000455362 DNAJC5BQ9UF47 199 aa10.86□□□□□ -0.67
HMGB1P4-201ENST00000455362 AMER1Q5JTC6 1135 aaPredicted RBP10.68□□□□□ -0.7
HMGB1P4-201ENST00000455362 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
HMGB1P4-201ENST00000455362 DCAF8L1A6NGE4 600 aa10.6□□□□□ -0.71
HMGB1P4-201ENST00000455362 ZBTB22O15209 634 aa10.59□□□□□ -0.71
HMGB1P4-201ENST00000455362 SLC4A2P04920 1241 aa10.54□□□□□ -0.72
HMGB1P4-201ENST00000455362 FOXD4L1Q9NU39 408 aa10.53□□□□□ -0.72
HMGB1P4-201ENST00000455362 RNF39Q9H2S5 420 aa10.4□□□□□ -0.74
HMGB1P4-201ENST00000455362 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.36□□□□□ -0.75
HMGB1P4-201ENST00000455362 CACNB1Q02641 598 aaPredicted RBP10.34□□□□□ -0.75
HMGB1P4-201ENST00000455362 U3KPZ7 1027 aaPredicted RBP10.33□□□□□ -0.76
HMGB1P4-201ENST00000455362 C1QBPQ07021 282 aaKnown RBP10.2□□□□□ -0.78
HMGB1P4-201ENST00000455362 MYCNP04198 464 aaPredicted RBP10.15□□□□□ -0.78
HMGB1P4-201ENST00000455362 ATXN8OSP0DMR3 200 aa10.14□□□□□ -0.79
HMGB1P4-201ENST00000455362 CCDC180Q9P1Z9 1646 aa10.11□□□□□ -0.79
HMGB1P4-201ENST00000455362 FKBP8Q14318 412 aa10.05□□□□□ -0.8
HMGB1P4-201ENST00000455362 SPINK5Q9NQ38 1064 aaPredicted RBP10.05□□□□□ -0.8
HMGB1P4-201ENST00000455362 ATF5Q9Y2D1 282 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P4-201ENST00000455362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P4-201ENST00000455362 HNRNPUL2Q1KMD3 747 aaKnown RBP10.01□□□□□ -0.81
HMGB1P4-201ENST00000455362 SAMD1Q6SPF0 538 aaPredicted RBP10.01□□□□□ -0.81
HMGB1P4-201ENST00000455362 CAPN15O75808 1086 aa9.88□□□□□ -0.83
HMGB1P4-201ENST00000455362 DSG3P32926 999 aa9.87□□□□□ -0.83
HMGB1P4-201ENST00000455362 APLP2Q06481 763 aa9.86□□□□□ -0.83
HMGB1P4-201ENST00000455362 TRHP20396 242 aaPredicted RBP9.84□□□□□ -0.83
HMGB1P4-201ENST00000455362 POTEHQ6S545 545 aa9.83□□□□□ -0.84
HMGB1P4-201ENST00000455362 ZNF219Q9P2Y4 722 aaPredicted RBP9.83□□□□□ -0.84
HMGB1P4-201ENST00000455362 PLCB2Q00722 1185 aa9.78□□□□□ -0.84
HMGB1P4-201ENST00000455362 BCANQ96GW7 911 aa9.77□□□□□ -0.85
HMGB1P4-201ENST00000455362 ABCB7O75027 752 aa9.74□□□□□ -0.85
HMGB1P4-201ENST00000455362 PRKCSHP14314 528 aaPredicted RBP9.73□□□□□ -0.85
HMGB1P4-201ENST00000455362 POLA2Q14181 598 aa9.73□□□□□ -0.85
HMGB1P4-201ENST00000455362 HAP1P54257 671 aaPredicted RBP9.71□□□□□ -0.86
HMGB1P4-201ENST00000455362 ZCCHC6Q5VYS8 1495 aaKnown RBP9.67□□□□□ -0.86
HMGB1P4-201ENST00000455362 TAOK2Q9UL54 1235 aa9.67□□□□□ -0.86
HMGB1P4-201ENST00000455362 ABCC9O60706 1549 aa9.64□□□□□ -0.87
HMGB1P4-201ENST00000455362 FBXO3Q9UK99 471 aa9.62□□□□□ -0.87
HMGB1P4-201ENST00000455362 DCAF8L2P0C7V8 631 aa9.59□□□□□ -0.87
HMGB1P4-201ENST00000455362 MKRN4PQ13434 485 aaPredicted RBP9.59□□□□□ -0.87
HMGB1P4-201ENST00000455362 DCAF1Q9Y4B6 1507 aa9.56□□□□□ -0.88
HMGB1P4-201ENST00000455362 TPRNQ4KMQ1 711 aa9.53□□□□□ -0.88
HMGB1P4-201ENST00000455362 VSIG10Q8N0Z9 540 aa9.53□□□□□ -0.88
HMGB1P4-201ENST00000455362 MYO15BQ96JP2 1530 aa9.49□□□□□ -0.89
HMGB1P4-201ENST00000455362 SPDYE4A6NLX3 237 aa9.47□□□□□ -0.89
HMGB1P4-201ENST00000455362 NACADO15069 1562 aa9.46□□□□□ -0.9
HMGB1P4-201ENST00000455362 ZBTB12Q9Y330 459 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P4-201ENST00000455362 DAXXQ9UER7 740 aaPredicted RBP9.4□□□□□ -0.9
HMGB1P4-201ENST00000455362 FBLN2P98095 1184 aa9.39□□□□□ -0.91
HMGB1P4-201ENST00000455362 OSCARQ8IYS5 282 aa9.39□□□□□ -0.91
HMGB1P4-201ENST00000455362 RB1CC1Q8TDY2 1594 aa9.38□□□□□ -0.91
HMGB1P4-201ENST00000455362 VASPP50552 380 aaPredicted RBP9.38□□□□□ -0.91
HMGB1P4-201ENST00000455362 SHROOM4Q9ULL8 1493 aa9.34□□□□□ -0.91
HMGB1P4-201ENST00000455362 PROM2Q8N271 834 aa9.32□□□□□ -0.92
HMGB1P4-201ENST00000455362 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P4-201ENST00000455362 ARXQ96QS3 562 aa9.3□□□□□ -0.92
HMGB1P4-201ENST00000455362 TIMELESSQ9UNS1 1208 aa9.3□□□□□ -0.92
HMGB1P4-201ENST00000455362 TULP1O00294 542 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P4-201ENST00000455362 KDM2AQ9Y2K7 1162 aa9.28□□□□□ -0.92
HMGB1P4-201ENST00000455362 SCRIBQ14160 1630 aa9.27□□□□□ -0.92
HMGB1P4-201ENST00000455362 SPDYE2BA6NHP3 402 aa9.27□□□□□ -0.93
HMGB1P4-201ENST00000455362 SPDYE6P0CI01 402 aa9.27□□□□□ -0.93
HMGB1P4-201ENST00000455362 SPDYE2Q495Y8 402 aa9.27□□□□□ -0.93
HMGB1P4-201ENST00000455362 SSUH2Q9Y2M2 353 aa9.27□□□□□ -0.93
HMGB1P4-201ENST00000455362 RBM42Q9BTD8 480 aaKnown RBP9.26□□□□□ -0.93
HMGB1P4-201ENST00000455362 IFNLR1Q8IU57 520 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P4-201ENST00000455362 ERICH6Q7L0X2 663 aa9.22□□□□□ -0.93
HMGB1P4-201ENST00000455362 BBXQ8WY36 941 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P4-201ENST00000455362 PAXIP1Q6ZW49 1069 aaPredicted RBP9.21□□□□□ -0.94
HMGB1P4-201ENST00000455362 AKT1S1Q96B36 256 aa9.21□□□□□ -0.94
HMGB1P4-201ENST00000455362 UNC13AQ9UPW8 1703 aa9.2□□□□□ -0.94
HMGB1P4-201ENST00000455362 CFAP44Q96MT7 982 aa9.2□□□□□ -0.94
HMGB1P4-201ENST00000455362 ZNF692Q9BU19 519 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P4-201ENST00000455362 PKD2Q13563 968 aa9.19□□□□□ -0.94
HMGB1P4-201ENST00000455362 GTF3C3Q9Y5Q9 886 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms