RNA–Protein interactions for RNA: ENST00000452660.5

LRCH3-209, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 681 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-209ENST00000452660 AEBP2Q6ZN18 517 aaPredicted RBP17.91■□□□□ 0.46
LRCH3-209ENST00000452660 CHIC1Q5VXU3 224 aa17.16■□□□□ 0.34
LRCH3-209ENST00000452660 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
LRCH3-209ENST00000452660 PHF23Q9BUL5 403 aaPredicted RBP15.13■□□□□ 0.01
LRCH3-209ENST00000452660 FOXD1Q16676 465 aa14.26□□□□□ -0.13
LRCH3-209ENST00000452660 PLPPR3Q6T4P5 718 aa13.76□□□□□ -0.21
LRCH3-209ENST00000452660 MSH5O43196 834 aa13.45□□□□□ -0.26
LRCH3-209ENST00000452660 PIAS4Q8N2W9 510 aaPredicted RBP13.33□□□□□ -0.28
LRCH3-209ENST00000452660 PPP6R1Q9UPN7 881 aa13.31□□□□□ -0.28
LRCH3-209ENST00000452660 ADRA2BP18089 450 aa13.25□□□□□ -0.29
LRCH3-209ENST00000452660 POTEDQ86YR6 584 aa12.93□□□□□ -0.34
LRCH3-209ENST00000452660 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
LRCH3-209ENST00000452660 DMRT2Q9Y5R5 561 aa12.21□□□□□ -0.45
LRCH3-209ENST00000452660 MAPK8IP2Q13387 824 aaPredicted RBP12.13□□□□□ -0.47
LRCH3-209ENST00000452660 PPP4R3CPQ6ZMV5 832 aa12□□□□□ -0.49
LRCH3-209ENST00000452660 CNKSR2Q8WXI2 1034 aa11.84□□□□□ -0.51
LRCH3-209ENST00000452660 HOXD11P31277 338 aaPredicted RBP11.82□□□□□ -0.52
LRCH3-209ENST00000452660 RNF216Q9NWF9 866 aaPredicted RBP11.73□□□□□ -0.53
LRCH3-209ENST00000452660 NCBP3Q53F19 620 aaKnown RBP11.65□□□□□ -0.54
LRCH3-209ENST00000452660 DNAJC5BQ9UF47 199 aa11.56□□□□□ -0.56
LRCH3-209ENST00000452660 DCAF8L1A6NGE4 600 aa11.54□□□□□ -0.56
LRCH3-209ENST00000452660 RNF39Q9H2S5 420 aa11.44□□□□□ -0.58
LRCH3-209ENST00000452660 CACNB1Q02641 598 aaPredicted RBP11.41□□□□□ -0.58
LRCH3-209ENST00000452660 NPM3O75607 178 aaKnown RBP11.37□□□□□ -0.59
LRCH3-209ENST00000452660 C1QBPQ07021 282 aaKnown RBP11.32□□□□□ -0.6
LRCH3-209ENST00000452660 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.16□□□□□ -0.621e-7■■□□□ 14.2
LRCH3-209ENST00000452660 KCNA4P22459 653 aa11.14□□□□□ -0.63
LRCH3-209ENST00000452660 U3KPZ7 1027 aaPredicted RBP10.93□□□□□ -0.66
LRCH3-209ENST00000452660 SLC4A2P04920 1241 aa10.84□□□□□ -0.67
LRCH3-209ENST00000452660 APLP2Q06481 763 aa10.81□□□□□ -0.68
LRCH3-209ENST00000452660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.78□□□□□ -0.68
LRCH3-209ENST00000452660 HNRNPUL2Q1KMD3 747 aaKnown RBP10.78□□□□□ -0.68
LRCH3-209ENST00000452660 CAPN15O75808 1086 aa10.7□□□□□ -0.7
LRCH3-209ENST00000452660 DSG3P32926 999 aa10.69□□□□□ -0.7
LRCH3-209ENST00000452660 SPINK5Q9NQ38 1064 aaPredicted RBP10.69□□□□□ -0.7
LRCH3-209ENST00000452660 SAMD1Q6SPF0 538 aaPredicted RBP10.68□□□□□ -0.7
LRCH3-209ENST00000452660 ZNF219Q9P2Y4 722 aaPredicted RBP10.65□□□□□ -0.7
LRCH3-209ENST00000452660 MYCNP04198 464 aaPredicted RBP10.6□□□□□ -0.71
LRCH3-209ENST00000452660 SLC4A1APQ9BWU0 796 aaKnown RBP10.58□□□□□ -0.72
LRCH3-209ENST00000452660 TRHP20396 242 aaPredicted RBP10.52□□□□□ -0.73
LRCH3-209ENST00000452660 FOXD4L1Q9NU39 408 aa10.48□□□□□ -0.73
LRCH3-209ENST00000452660 ABCB7O75027 752 aa10.4□□□□□ -0.74
LRCH3-209ENST00000452660 RBM42Q9BTD8 480 aaKnown RBP10.31□□□□□ -0.76
LRCH3-209ENST00000452660 POLA2Q14181 598 aa10.29□□□□□ -0.76
LRCH3-209ENST00000452660 ATXN8OSP0DMR3 200 aa10.27□□□□□ -0.77
LRCH3-209ENST00000452660 ZBTB12Q9Y330 459 aaPredicted RBP10.25□□□□□ -0.77
LRCH3-209ENST00000452660 ZBTB22O15209 634 aa10.22□□□□□ -0.77
LRCH3-209ENST00000452660 ATF5Q9Y2D1 282 aaPredicted RBP10.19□□□□□ -0.78
LRCH3-209ENST00000452660 POTEHQ6S545 545 aa10.16□□□□□ -0.78
LRCH3-209ENST00000452660 AKT1S1Q96B36 256 aa10.05□□□□□ -0.8
LRCH3-209ENST00000452660 CHRDL2Q6WN34 429 aa9.96□□□□□ -0.82
LRCH3-209ENST00000452660 FBLN2P98095 1184 aa9.93□□□□□ -0.82
LRCH3-209ENST00000452660 OSCARQ8IYS5 282 aa9.92□□□□□ -0.82
LRCH3-209ENST00000452660 SPDYE2BA6NHP3 402 aa9.89□□□□□ -0.83
LRCH3-209ENST00000452660 SPDYE6P0CI01 402 aa9.89□□□□□ -0.83
LRCH3-209ENST00000452660 SPDYE2Q495Y8 402 aa9.89□□□□□ -0.83
LRCH3-209ENST00000452660 REM2Q8IYK8 340 aaPredicted RBP9.87□□□□□ -0.83
LRCH3-209ENST00000452660 CSRNP3Q8WYN3 585 aa9.82□□□□□ -0.84
LRCH3-209ENST00000452660 MKRN4PQ13434 485 aaPredicted RBP9.77□□□□□ -0.85
LRCH3-209ENST00000452660 PITPNM1O00562 1244 aa9.74□□□□□ -0.85
LRCH3-209ENST00000452660 SSUH2Q9Y2M2 353 aa9.74□□□□□ -0.85
LRCH3-209ENST00000452660 FXR2P51116 673 aaKnown RBP eCLIP9.72□□□□□ -0.85
LRCH3-209ENST00000452660 PIP4P2Q8N4L2 257 aa9.71□□□□□ -0.86
LRCH3-209ENST00000452660 ZNF692Q9BU19 519 aaPredicted RBP9.69□□□□□ -0.86
LRCH3-209ENST00000452660 SPDYE1Q8NFV5 336 aaPredicted RBP9.68□□□□□ -0.86
LRCH3-209ENST00000452660 EHMT2Q96KQ7 1210 aa9.61□□□□□ -0.87
LRCH3-209ENST00000452660 SP7Q8TDD2 431 aaPredicted RBP9.57□□□□□ -0.88
LRCH3-209ENST00000452660 PABPN1Q86U42 306 aaKnown RBP eCLIP9.53□□□□□ -0.88
LRCH3-209ENST00000452660 CLEC11AQ9Y240 323 aa9.53□□□□□ -0.88
LRCH3-209ENST00000452660 HAX1O00165 279 aa9.5□□□□□ -0.89
LRCH3-209ENST00000452660 PRKAR2AP13861 404 aaKnown RBP9.49□□□□□ -0.89
LRCH3-209ENST00000452660 PRR29P0C7W0 189 aa9.45□□□□□ -0.9
LRCH3-209ENST00000452660 STAG3Q9UJ98 1225 aa9.41□□□□□ -0.9
LRCH3-209ENST00000452660 C19orf67A6NJJ6 358 aa9.4□□□□□ -0.9
LRCH3-209ENST00000452660 SPDYE4A6NLX3 237 aa9.36□□□□□ -0.91
LRCH3-209ENST00000452660 EVX2Q03828 476 aa9.32□□□□□ -0.92
LRCH3-209ENST00000452660 CLCN6P51797 869 aa9.31□□□□□ -0.92
LRCH3-209ENST00000452660 CHADLQ6NUI6 762 aa9.31□□□□□ -0.92
LRCH3-209ENST00000452660 FARP1Q9Y4F1 1045 aaPredicted RBP9.29□□□□□ -0.92
LRCH3-209ENST00000452660 PROM2Q8N271 834 aa9.25□□□□□ -0.93
LRCH3-209ENST00000452660 CREBZFQ9NS37 354 aa9.22□□□□□ -0.93
LRCH3-209ENST00000452660 GABBR2O75899 941 aa9.2□□□□□ -0.94
LRCH3-209ENST00000452660 CD44P16070 742 aaKnown RBP9.2□□□□□ -0.94
LRCH3-209ENST00000452660 NPM1P06748 294 aaKnown RBP eCLIP9.14□□□□□ -0.95
LRCH3-209ENST00000452660 ZNF579Q8NAF0 562 aaKnown RBP9.14□□□□□ -0.95
LRCH3-209ENST00000452660 MNX1P50219 401 aaPredicted RBP9.09□□□□□ -0.95
LRCH3-209ENST00000452660 PAK3O75914 559 aaPredicted RBP9.08□□□□□ -0.96
LRCH3-209ENST00000452660 ZRANB1Q9UGI0 708 aa9.05□□□□□ -0.96
LRCH3-209ENST00000452660 PLEKHG5O94827 1062 aa9□□□□□ -0.97
LRCH3-209ENST00000452660 DCBLD2Q96PD2 775 aa8.98□□□□□ -0.97
LRCH3-209ENST00000452660 POTEIP0CG38 1075 aa8.97□□□□□ -0.97
LRCH3-209ENST00000452660 LHX8Q68G74 356 aa8.95□□□□□ -0.98
LRCH3-209ENST00000452660 ZBTB47Q9UFB7 747 aaPredicted RBP8.92□□□□□ -0.98
LRCH3-209ENST00000452660 GALR2O43603 387 aaPredicted RBP8.91□□□□□ -0.98
LRCH3-209ENST00000452660 MIER1Q8N108 512 aa8.91□□□□□ -0.98
LRCH3-209ENST00000452660 PHF12Q96QT6 1004 aa8.89□□□□□ -0.99
LRCH3-209ENST00000452660 FKBP8Q14318 412 aa8.88□□□□□ -0.99
LRCH3-209ENST00000452660 CCDC61Q9Y6R9 512 aa8.87□□□□□ -0.99
LRCH3-209ENST00000452660 PLCD3Q8N3E9 789 aa8.85□□□□□ -0.99
LRCH3-209ENST00000452660 FBXO3Q9UK99 471 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms