RNA–Protein interactions for RNA: ENST00000446501.6

BRF1-206, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 2 BASIC

Gene BRF1, Length 2,858 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-206ENST00000446501 NISCHQ9Y2I1 1504 aa33.82■■■■□ 3
BRF1-206ENST00000446501 SHROOM4Q9ULL8 1493 aa29.02■■■□□ 2.24
BRF1-206ENST00000446501 CCDC180Q9P1Z9 1646 aa28.65■■■□□ 2.18
BRF1-206ENST00000446501 ZCCHC6Q5VYS8 1495 aaKnown RBP28.53■■■□□ 2.16
BRF1-206ENST00000446501 DCAF8L2P0C7V8 631 aa28.5■■■□□ 2.15
BRF1-206ENST00000446501 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
BRF1-206ENST00000446501 DCAF1Q9Y4B6 1507 aa27.58■■■□□ 2.01
BRF1-206ENST00000446501 CHIC1Q5VXU3 224 aa27.32■■□□□ 1.96
BRF1-206ENST00000446501 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
BRF1-206ENST00000446501 ABCC9O60706 1549 aa27.1■■□□□ 1.93
BRF1-206ENST00000446501 SCRIBQ14160 1630 aa27.1■■□□□ 1.93
BRF1-206ENST00000446501 HRCP23327 699 aa27.09■■□□□ 1.93
BRF1-206ENST00000446501 RSF1Q96T23 1441 aaPredicted RBP26.76■■□□□ 1.87
BRF1-206ENST00000446501 PCGF6Q9BYE7 350 aa26.74■■□□□ 1.87
BRF1-206ENST00000446501 PPARGC1BQ86YN6 1023 aaKnown RBP26.74■■□□□ 1.87
BRF1-206ENST00000446501 LOC105371045A0A1W2PR82 267 aa26.65■■□□□ 1.86
BRF1-206ENST00000446501 NACADO15069 1562 aa26.63■■□□□ 1.85
BRF1-206ENST00000446501 CECR2Q9BXF3 1484 aa26.54■■□□□ 1.84
BRF1-206ENST00000446501 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
BRF1-206ENST00000446501 MROH2BQ7Z745 1585 aa26.37■■□□□ 1.81
BRF1-206ENST00000446501 TRIM41Q8WV44 630 aa26.31■■□□□ 1.8
BRF1-206ENST00000446501 FAM9AQ8IZU1 332 aaPredicted RBP26.26■■□□□ 1.79
BRF1-206ENST00000446501 WIZO95785 1651 aa26.19■■□□□ 1.78
BRF1-206ENST00000446501 EHMT2Q96KQ7 1210 aa26.18■■□□□ 1.78
BRF1-206ENST00000446501 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.75
BRF1-206ENST00000446501 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.74
BRF1-206ENST00000446501 PELP1Q8IZL8 1130 aaKnown RBP25.94■■□□□ 1.74
BRF1-206ENST00000446501 UNC13AQ9UPW8 1703 aa25.86■■□□□ 1.73
BRF1-206ENST00000446501 SMARCA4P51532 1647 aa25.77■■□□□ 1.72
BRF1-206ENST00000446501 TRIM26Q12899 539 aaPredicted RBP25.74■■□□□ 1.71
BRF1-206ENST00000446501 CCDC88BA6NC98 1476 aa25.68■■□□□ 1.7
BRF1-206ENST00000446501 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
BRF1-206ENST00000446501 SCAF1Q9H7N4 1312 aaKnown RBP25.67■■□□□ 1.7
BRF1-206ENST00000446501 BICRAQ9NZM4 1560 aa25.63■■□□□ 1.69
BRF1-206ENST00000446501 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
BRF1-206ENST00000446501 ABCC8Q09428 1581 aa25.6■■□□□ 1.69
BRF1-206ENST00000446501 SMARCA2P51531 1590 aa25.57■■□□□ 1.68
BRF1-206ENST00000446501 ZEB1P37275 1124 aaPredicted RBP25.42■■□□□ 1.66
BRF1-206ENST00000446501 SOGA1O94964 1423 aa25.36■■□□□ 1.65
BRF1-206ENST00000446501 RUSC2Q8N2Y8 1516 aa25.26■■□□□ 1.63
BRF1-206ENST00000446501 TTBK1Q5TCY1 1321 aaPredicted RBP25.24■■□□□ 1.63
BRF1-206ENST00000446501 ATAD2BQ9ULI0 1458 aa25.24■■□□□ 1.63
BRF1-206ENST00000446501 PEG3Q9GZU2 1588 aa25.19■■□□□ 1.62
BRF1-206ENST00000446501 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
BRF1-206ENST00000446501 CSRNP3Q8WYN3 585 aa25.16■■□□□ 1.62
BRF1-206ENST00000446501 WRNQ14191 1432 aaPredicted RBP eCLIP25.14■■□□□ 1.61
BRF1-206ENST00000446501 UBTFP17480 764 aaKnown RBP25.14■■□□□ 1.61
BRF1-206ENST00000446501 CEP162Q5TB80 1403 aa25.07■■□□□ 1.6
BRF1-206ENST00000446501 NEUROD1Q13562 356 aa25.02■■□□□ 1.6
BRF1-206ENST00000446501 ACIN1Q9UKV3 1341 aaKnown RBP25.02■■□□□ 1.6
BRF1-206ENST00000446501 SYNJ1O43426 1573 aa25■■□□□ 1.59
BRF1-206ENST00000446501 TNIKQ9UKE5 1360 aa24.97■■□□□ 1.59
BRF1-206ENST00000446501 EEA1Q15075 1411 aa24.94■■□□□ 1.58
BRF1-206ENST00000446501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.94■■□□□ 1.58
BRF1-206ENST00000446501 GTF3C3Q9Y5Q9 886 aa24.91■■□□□ 1.58
BRF1-206ENST00000446501 RANGAP1P46060 587 aaPredicted RBP24.89■■□□□ 1.57
BRF1-206ENST00000446501 GOLGA3Q08378 1498 aa24.86■■□□□ 1.57
BRF1-206ENST00000446501 MYT1Q01538 1121 aa24.85■■□□□ 1.57
BRF1-206ENST00000446501 CCER1Q8TC90 406 aaPredicted RBP24.79■■□□□ 1.56
BRF1-206ENST00000446501 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
BRF1-206ENST00000446501 CENPBP07199 599 aaPredicted RBP24.73■■□□□ 1.55
BRF1-206ENST00000446501 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
BRF1-206ENST00000446501 RAPGEF2Q9Y4G8 1499 aa24.7■■□□□ 1.55
BRF1-206ENST00000446501 DIEXFQ68CQ4 756 aaKnown RBP24.68■■□□□ 1.54
BRF1-206ENST00000446501 CLIP1P30622 1438 aa24.65■■□□□ 1.54
BRF1-206ENST00000446501 TOP2BQ02880 1626 aa24.62■■□□□ 1.53
BRF1-206ENST00000446501 HMGXB3Q12766 1538 aa24.62■■□□□ 1.53
BRF1-206ENST00000446501 KIF21BO75037 1637 aa24.61■■□□□ 1.53
BRF1-206ENST00000446501 CUX1P39880 1505 aa24.53■■□□□ 1.52
BRF1-206ENST00000446501 HNRNPUL2Q1KMD3 747 aaKnown RBP24.51■■□□□ 1.51
BRF1-206ENST00000446501 CFTRP13569 1480 aa24.49■■□□□ 1.51
BRF1-206ENST00000446501 BIVM-ERCC5R4GMW8 1640 aa24.48■■□□□ 1.51
BRF1-206ENST00000446501 YTHDC1Q96MU7 727 aaKnown RBP24.47■■□□□ 1.51
BRF1-206ENST00000446501 VPS8Q8N3P4 1428 aa24.45■■□□□ 1.51
BRF1-206ENST00000446501 APLP2Q06481 763 aa24.45■■□□□ 1.5
BRF1-206ENST00000446501 PRXQ9BXM0 1461 aa24.38■■□□□ 1.49
BRF1-206ENST00000446501 KIF27Q86VH2 1401 aa24.36■■□□□ 1.49
BRF1-206ENST00000446501 CADPSQ9ULU8 1353 aa24.31■■□□□ 1.48
BRF1-206ENST00000446501 CC2D2AQ9P2K1 1620 aa24.27■■□□□ 1.48
BRF1-206ENST00000446501 ERICH3Q5RHP9 1530 aa24.26■■□□□ 1.47
BRF1-206ENST00000446501 KANK4Q5T7N3 995 aaPredicted RBP24.25■■□□□ 1.47
BRF1-206ENST00000446501 ARAP1Q96P48 1450 aa24.24■■□□□ 1.47
BRF1-206ENST00000446501 CUX2O14529 1486 aa24.24■■□□□ 1.47
BRF1-206ENST00000446501 IGF1RP08069 1367 aa24.17■■□□□ 1.46
BRF1-206ENST00000446501 ZNF316A6NFI3 1004 aaPredicted RBP24.15■■□□□ 1.46
BRF1-206ENST00000446501 FGD5Q6ZNL6 1462 aa24.15■■□□□ 1.46
BRF1-206ENST00000446501 NESP48681 1621 aa24.09■■□□□ 1.45
BRF1-206ENST00000446501 ARHGAP35Q9NRY4 1499 aa24.09■■□□□ 1.45
BRF1-206ENST00000446501 FANCD2Q9BXW9 1451 aa24.08■■□□□ 1.45
BRF1-206ENST00000446501 MIER1Q8N108 512 aa24.07■■□□□ 1.44
BRF1-206ENST00000446501 CARMIL1Q5VZK9 1371 aa24.06■■□□□ 1.44
BRF1-206ENST00000446501 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
BRF1-206ENST00000446501 PRDM2Q13029 1718 aa24.05■■□□□ 1.44
BRF1-206ENST00000446501 P3H3Q8IVL6 736 aa24.04■■□□□ 1.44
BRF1-206ENST00000446501 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
BRF1-206ENST00000446501 ITGAEP38570 1179 aa24.01■■□□□ 1.43
BRF1-206ENST00000446501 ATP1B4Q9UN42 357 aaPredicted RBP23.93■■□□□ 1.42
BRF1-206ENST00000446501 POLA1P09884 1462 aaPredicted RBP23.88■■□□□ 1.41
BRF1-206ENST00000446501 TOPBP1Q92547 1522 aa23.88■■□□□ 1.41
BRF1-206ENST00000446501 DNMBPQ6XZF7 1577 aa23.83■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms