RNA–Protein interactions for RNA: ENST00000445184.1

LINC01004-201, Transcript of long intergenic non-protein coding RNA 1004, humanhuman

TSL 5 BASIC

Gene LINC01004, Length 686 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01004-201ENST00000445184 AEBP2Q6ZN18 517 aaPredicted RBP28.8■■■□□ 2.2
LINC01004-201ENST00000445184 CHIC1Q5VXU3 224 aa26.98■■□□□ 1.91
LINC01004-201ENST00000445184 SENP3Q9H4L4 574 aaPredicted RBP24.7■■□□□ 1.54
LINC01004-201ENST00000445184 PHF23Q9BUL5 403 aaPredicted RBP24.3■■□□□ 1.48
LINC01004-201ENST00000445184 FOXD1Q16676 465 aa23.05■■□□□ 1.28
LINC01004-201ENST00000445184 POTEDQ86YR6 584 aa22.07■■□□□ 1.12
LINC01004-201ENST00000445184 MSH5O43196 834 aa21.8■■□□□ 1.08
LINC01004-201ENST00000445184 PIAS4Q8N2W9 510 aaPredicted RBP21.44■■□□□ 1.02
LINC01004-201ENST00000445184 PLPPR3Q6T4P5 718 aa21.31■■□□□ 1
LINC01004-201ENST00000445184 PPP6R1Q9UPN7 881 aa21.16■□□□□ 0.98
LINC01004-201ENST00000445184 ADRA2BP18089 450 aa21.08■□□□□ 0.97
LINC01004-201ENST00000445184 MAPK8IP2Q13387 824 aaPredicted RBP19.49■□□□□ 0.71
LINC01004-201ENST00000445184 DMRT2Q9Y5R5 561 aa19.49■□□□□ 0.71
LINC01004-201ENST00000445184 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
LINC01004-201ENST00000445184 CACNB1Q02641 598 aaPredicted RBP19.01■□□□□ 0.63
LINC01004-201ENST00000445184 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
LINC01004-201ENST00000445184 PPP4R3CPQ6ZMV5 832 aa18.6■□□□□ 0.57
LINC01004-201ENST00000445184 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
LINC01004-201ENST00000445184 RNF39Q9H2S5 420 aa18.53■□□□□ 0.56
LINC01004-201ENST00000445184 CNKSR2Q8WXI2 1034 aa18.38■□□□□ 0.53
LINC01004-201ENST00000445184 RNF216Q9NWF9 866 aaPredicted RBP18.33■□□□□ 0.52
LINC01004-201ENST00000445184 C1QBPQ07021 282 aaKnown RBP18.26■□□□□ 0.51
LINC01004-201ENST00000445184 DNAJC5BQ9UF47 199 aa18.07■□□□□ 0.48
LINC01004-201ENST00000445184 NCBP3Q53F19 620 aaKnown RBP17.78■□□□□ 0.44
LINC01004-201ENST00000445184 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.74■□□□□ 0.43
LINC01004-201ENST00000445184 NPM3O75607 178 aaKnown RBP17.46■□□□□ 0.39
LINC01004-201ENST00000445184 U3KPZ7 1027 aaPredicted RBP17.26■□□□□ 0.35
LINC01004-201ENST00000445184 POTEHQ6S545 545 aa17.22■□□□□ 0.35
LINC01004-201ENST00000445184 CAPN15O75808 1086 aa17.2■□□□□ 0.34
LINC01004-201ENST00000445184 DSG3P32926 999 aa17.19■□□□□ 0.34
LINC01004-201ENST00000445184 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
LINC01004-201ENST00000445184 APLP2Q06481 763 aa16.82■□□□□ 0.28
LINC01004-201ENST00000445184 TRHP20396 242 aaPredicted RBP16.8■□□□□ 0.28
LINC01004-201ENST00000445184 SLC4A2P04920 1241 aa16.78■□□□□ 0.28
LINC01004-201ENST00000445184 ZNF219Q9P2Y4 722 aaPredicted RBP16.77■□□□□ 0.28
LINC01004-201ENST00000445184 ABCB7O75027 752 aa16.72■□□□□ 0.27
LINC01004-201ENST00000445184 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.68■□□□□ 0.26
LINC01004-201ENST00000445184 KCNA4P22459 653 aa16.68■□□□□ 0.26
LINC01004-201ENST00000445184 HNRNPUL2Q1KMD3 747 aaKnown RBP16.68■□□□□ 0.26
LINC01004-201ENST00000445184 SAMD1Q6SPF0 538 aaPredicted RBP16.54■□□□□ 0.24
LINC01004-201ENST00000445184 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
LINC01004-201ENST00000445184 CHRDL2Q6WN34 429 aa16.26■□□□□ 0.19
LINC01004-201ENST00000445184 POLA2Q14181 598 aa16.23■□□□□ 0.19
LINC01004-201ENST00000445184 MYCNP04198 464 aaPredicted RBP16.19■□□□□ 0.18
LINC01004-201ENST00000445184 AKT1S1Q96B36 256 aa15.96■□□□□ 0.15
LINC01004-201ENST00000445184 SP7Q8TDD2 431 aaPredicted RBP15.91■□□□□ 0.14
LINC01004-201ENST00000445184 ZBTB12Q9Y330 459 aaPredicted RBP15.9■□□□□ 0.14
LINC01004-201ENST00000445184 ATF5Q9Y2D1 282 aaPredicted RBP15.8■□□□□ 0.12
LINC01004-201ENST00000445184 REM2Q8IYK8 340 aaPredicted RBP15.79■□□□□ 0.12
LINC01004-201ENST00000445184 PIP4P2Q8N4L2 257 aa15.76■□□□□ 0.11
LINC01004-201ENST00000445184 FOXD4L1Q9NU39 408 aa15.75■□□□□ 0.11
LINC01004-201ENST00000445184 OSCARQ8IYS5 282 aa15.71■□□□□ 0.11
LINC01004-201ENST00000445184 SLC4A1APQ9BWU0 796 aaKnown RBP15.68■□□□□ 0.1
LINC01004-201ENST00000445184 HAX1O00165 279 aa15.64■□□□□ 0.09
LINC01004-201ENST00000445184 PITPNM1O00562 1244 aa15.61■□□□□ 0.09
LINC01004-201ENST00000445184 FXR2P51116 673 aaKnown RBP eCLIP15.59■□□□□ 0.09
LINC01004-201ENST00000445184 SPDYE2BA6NHP3 402 aa15.35■□□□□ 0.05
LINC01004-201ENST00000445184 SPDYE6P0CI01 402 aa15.35■□□□□ 0.05
LINC01004-201ENST00000445184 EVX2Q03828 476 aa15.35■□□□□ 0.05
LINC01004-201ENST00000445184 SPDYE2Q495Y8 402 aa15.35■□□□□ 0.05
LINC01004-201ENST00000445184 ATXN8OSP0DMR3 200 aa15.34■□□□□ 0.05
LINC01004-201ENST00000445184 FBLN2P98095 1184 aa15.3■□□□□ 0.04
LINC01004-201ENST00000445184 ZBTB22O15209 634 aa15.29■□□□□ 0.04
LINC01004-201ENST00000445184 PRKAR2AP13861 404 aaKnown RBP15.23■□□□□ 0.03
LINC01004-201ENST00000445184 SPDYE1Q8NFV5 336 aaPredicted RBP15.21■□□□□ 0.03
LINC01004-201ENST00000445184 CLEC11AQ9Y240 323 aa15.21■□□□□ 0.03
LINC01004-201ENST00000445184 C19orf67A6NJJ6 358 aa15.11■□□□□ 0.01
LINC01004-201ENST00000445184 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
LINC01004-201ENST00000445184 SSUH2Q9Y2M2 353 aa15.06■□□□□ 0
LINC01004-201ENST00000445184 MKRN4PQ13434 485 aaPredicted RBP15.05■□□□□ -0
LINC01004-201ENST00000445184 GABBR2O75899 941 aa15.01□□□□□ -0.01
LINC01004-201ENST00000445184 CHADLQ6NUI6 762 aa14.94□□□□□ -0.02
LINC01004-201ENST00000445184 LHX8Q68G74 356 aa14.93□□□□□ -0.02
LINC01004-201ENST00000445184 PRR29P0C7W0 189 aa14.9□□□□□ -0.02
LINC01004-201ENST00000445184 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
LINC01004-201ENST00000445184 CD44P16070 742 aaKnown RBP14.72□□□□□ -0.05
LINC01004-201ENST00000445184 CLCN6P51797 869 aa14.68□□□□□ -0.06
LINC01004-201ENST00000445184 FARP1Q9Y4F1 1045 aaPredicted RBP14.68□□□□□ -0.06
LINC01004-201ENST00000445184 POTEIP0CG38 1075 aa14.66□□□□□ -0.06
LINC01004-201ENST00000445184 DCBLD2Q96PD2 775 aa14.54□□□□□ -0.08
LINC01004-201ENST00000445184 ZNF579Q8NAF0 562 aaKnown RBP14.46□□□□□ -0.09
LINC01004-201ENST00000445184 ZRANB1Q9UGI0 708 aa14.44□□□□□ -0.1
LINC01004-201ENST00000445184 PLSCR2Q9NRY7 297 aa14.38□□□□□ -0.11
LINC01004-201ENST00000445184 STAG3Q9UJ98 1225 aa14.37□□□□□ -0.11
LINC01004-201ENST00000445184 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
LINC01004-201ENST00000445184 GALR2O43603 387 aaPredicted RBP14.31□□□□□ -0.12
LINC01004-201ENST00000445184 PAK3O75914 559 aaPredicted RBP14.26□□□□□ -0.13
LINC01004-201ENST00000445184 OTUD5Q96G74 571 aa14.23□□□□□ -0.13
LINC01004-201ENST00000445184 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
LINC01004-201ENST00000445184 POTEB2H3BUK9 544 aa14.17□□□□□ -0.14
LINC01004-201ENST00000445184 PHF12Q96QT6 1004 aa14.16□□□□□ -0.14
LINC01004-201ENST00000445184 NPM1P06748 294 aaKnown RBP eCLIP14.15□□□□□ -0.14
LINC01004-201ENST00000445184 SPDYE4A6NLX3 237 aa14.14□□□□□ -0.15
LINC01004-201ENST00000445184 POTEMA6NI47 508 aa14.08□□□□□ -0.16
LINC01004-201ENST00000445184 PELP1Q8IZL8 1130 aaKnown RBP14.06□□□□□ -0.16
LINC01004-201ENST00000445184 MNX1P50219 401 aaPredicted RBP14.04□□□□□ -0.16
LINC01004-201ENST00000445184 POTEGQ6S5H5 508 aa14.02□□□□□ -0.17
LINC01004-201ENST00000445184 ASTLQ6HA08 431 aaPredicted RBP13.99□□□□□ -0.17
LINC01004-201ENST00000445184 METRNQ9UJH8 293 aa13.98□□□□□ -0.17
LINC01004-201ENST00000445184 MS4A3Q96HJ5 214 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms