RNA–Protein interactions for RNA: ENST00000444475.5

UBR3-206, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 5

Gene UBR3, Length 3,821 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-206ENST00000444475 CHIC1Q5VXU3 224 aa8.77□□□□□ -1.01
UBR3-206ENST00000444475 SLC24A1O60721 1099 aa8.76□□□□□ -1.01
UBR3-206ENST00000444475 AEBP2Q6ZN18 517 aaPredicted RBP8.18□□□□□ -1.1
UBR3-206ENST00000444475 EHMT2Q96KQ7 1210 aa8.12□□□□□ -1.11
UBR3-206ENST00000444475 PLPPR3Q6T4P5 718 aa7.98□□□□□ -1.13
UBR3-206ENST00000444475 RTN4Q9NQC3 1192 aaKnown RBP7.94□□□□□ -1.14
UBR3-206ENST00000444475 PHF23Q9BUL5 403 aaPredicted RBP7.92□□□□□ -1.14
UBR3-206ENST00000444475 DAXXQ9UER7 740 aaPredicted RBP7.9□□□□□ -1.14
UBR3-206ENST00000444475 NCBP3Q53F19 620 aaKnown RBP7.88□□□□□ -1.15
UBR3-206ENST00000444475 AMER1Q5JTC6 1135 aaPredicted RBP7.82□□□□□ -1.16
UBR3-206ENST00000444475 CSRNP3Q8WYN3 585 aa7.78□□□□□ -1.16
UBR3-206ENST00000444475 KCNA4P22459 653 aa7.75□□□□□ -1.17
UBR3-206ENST00000444475 ARXQ96QS3 562 aa7.52□□□□□ -1.21
UBR3-206ENST00000444475 PRKCSHP14314 528 aaPredicted RBP7.49□□□□□ -1.21
UBR3-206ENST00000444475 APLP2Q06481 763 aa7.44□□□□□ -1.22
UBR3-206ENST00000444475 TIMELESSQ9UNS1 1208 aa7.41□□□□□ -1.22
UBR3-206ENST00000444475 TAOK2Q9UL54 1235 aa7.36□□□□□ -1.23
UBR3-206ENST00000444475 SLC4A1APQ9BWU0 796 aaKnown RBP7.31□□□□□ -1.24
UBR3-206ENST00000444475 TTBK1Q5TCY1 1321 aaPredicted RBP7.3□□□□□ -1.24
UBR3-206ENST00000444475 BCANQ96GW7 911 aa7.25□□□□□ -1.25
UBR3-206ENST00000444475 TULP1O00294 542 aaPredicted RBP7.21□□□□□ -1.25
UBR3-206ENST00000444475 PLCB2Q00722 1185 aa7.2□□□□□ -1.26
UBR3-206ENST00000444475 HOMEZQ8IX15 550 aa7.19□□□□□ -1.26
UBR3-206ENST00000444475 PELP1Q8IZL8 1130 aaKnown RBP7.18□□□□□ -1.26
UBR3-206ENST00000444475 ZBTB22O15209 634 aa7.17□□□□□ -1.26
UBR3-206ENST00000444475 TPRNQ4KMQ1 711 aa7.14□□□□□ -1.27
UBR3-206ENST00000444475 ERICH6Q7L0X2 663 aa7.09□□□□□ -1.27
UBR3-206ENST00000444475 MYT1Q01538 1121 aa7.09□□□□□ -1.27
UBR3-206ENST00000444475 GTF3C3Q9Y5Q9 886 aa7.07□□□□□ -1.28
UBR3-206ENST00000444475 ADRA2BP18089 450 aa7.05□□□□□ -1.28
UBR3-206ENST00000444475 RANGAP1P46060 587 aaPredicted RBP7.04□□□□□ -1.28
UBR3-206ENST00000444475 KLHL34Q8N239 644 aa7.03□□□□□ -1.28
UBR3-206ENST00000444475 VSIG10Q8N0Z9 540 aa6.98□□□□□ -1.29
UBR3-206ENST00000444475 TMEM132AQ24JP5 1023 aa6.96□□□□□ -1.3
UBR3-206ENST00000444475 HAP1P54257 671 aaPredicted RBP6.96□□□□□ -1.3
UBR3-206ENST00000444475 PODXL2Q9NZ53 605 aa6.96□□□□□ -1.3
UBR3-206ENST00000444475 KDM2AQ9Y2K7 1162 aa6.9□□□□□ -1.31
UBR3-206ENST00000444475 NPM3O75607 178 aaKnown RBP6.85□□□□□ -1.31
UBR3-206ENST00000444475 NPM2Q86SE8 214 aaKnown RBP6.83□□□□□ -1.32
UBR3-206ENST00000444475 FKBP8Q14318 412 aa6.82□□□□□ -1.32
UBR3-206ENST00000444475 FBXO3Q9UK99 471 aa6.82□□□□□ -1.32
UBR3-206ENST00000444475 POTEDQ86YR6 584 aa6.79□□□□□ -1.32
UBR3-206ENST00000444475 FBLN2P98095 1184 aa6.77□□□□□ -1.33
UBR3-206ENST00000444475 EIF5BO60841 1220 aaKnown RBP6.76□□□□□ -1.33
UBR3-206ENST00000444475 C14orf37Q86TY3 774 aa6.76□□□□□ -1.33
UBR3-206ENST00000444475 TRIM26Q12899 539 aaPredicted RBP6.75□□□□□ -1.33
UBR3-206ENST00000444475 HRCP23327 699 aa6.74□□□□□ -1.33
UBR3-206ENST00000444475 FOXD4L1Q9NU39 408 aa6.68□□□□□ -1.34
UBR3-206ENST00000444475 PPP4R3CPQ6ZMV5 832 aa6.68□□□□□ -1.34
UBR3-206ENST00000444475 UBTFP17480 764 aaKnown RBP6.66□□□□□ -1.34
UBR3-206ENST00000444475 PPP6R1Q9UPN7 881 aa6.66□□□□□ -1.34
UBR3-206ENST00000444475 LOC105371045A0A1W2PR82 267 aa6.64□□□□□ -1.35
UBR3-206ENST00000444475 DNAJC5Q9H3Z4 198 aa6.61□□□□□ -1.35
UBR3-206ENST00000444475 SUPT5HO00267 1087 aaKnown RBP6.59□□□□□ -1.35
UBR3-206ENST00000444475 SENP3Q9H4L4 574 aaPredicted RBP6.59□□□□□ -1.35
UBR3-206ENST00000444475 DNAJC5BQ9UF47 199 aa6.57□□□□□ -1.36
UBR3-206ENST00000444475 PLEKHG5O94827 1062 aa6.55□□□□□ -1.36
UBR3-206ENST00000444475 BBXQ8WY36 941 aaPredicted RBP6.51□□□□□ -1.37
UBR3-206ENST00000444475 PKD2Q13563 968 aa6.5□□□□□ -1.37
UBR3-206ENST00000444475 NPM1P06748 294 aaKnown RBP eCLIP6.48□□□□□ -1.37
UBR3-206ENST00000444475 TSHZ2Q9NRE2 1034 aa6.47□□□□□ -1.37
UBR3-206ENST00000444475 DCAF8L2P0C7V8 631 aa6.46□□□□□ -1.38
UBR3-206ENST00000444475 PAXIP1Q6ZW49 1069 aaPredicted RBP6.44□□□□□ -1.38
UBR3-206ENST00000444475 NBR1Q14596 966 aa6.43□□□□□ -1.38
UBR3-206ENST00000444475 IGSF3O75054 1194 aa6.43□□□□□ -1.38
UBR3-206ENST00000444475 CNKSR2Q8WXI2 1034 aa6.41□□□□□ -1.38
UBR3-206ENST00000444475 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.41□□□□□ -1.38
UBR3-206ENST00000444475 ATXN8OSP0DMR3 200 aa6.4□□□□□ -1.38
UBR3-206ENST00000444475 SHROOM4Q9ULL8 1493 aa6.4□□□□□ -1.39
UBR3-206ENST00000444475 SAMD1Q6SPF0 538 aaPredicted RBP6.39□□□□□ -1.39
UBR3-206ENST00000444475 CFAP44Q96MT7 982 aa6.37□□□□□ -1.39
UBR3-206ENST00000444475 CCDC9Q9Y3X0 531 aaKnown RBP6.37□□□□□ -1.39
UBR3-206ENST00000444475 TRHP20396 242 aaPredicted RBP6.36□□□□□ -1.39
UBR3-206ENST00000444475 BRPF1P55201 1214 aaPredicted RBP6.36□□□□□ -1.39
UBR3-206ENST00000444475 CHMP4AQ9BY43 222 aa6.36□□□□□ -1.39
UBR3-206ENST00000444475 NECTIN2Q92692 538 aa6.34□□□□□ -1.39
UBR3-206ENST00000444475 IFNLR1Q8IU57 520 aaPredicted RBP6.34□□□□□ -1.39
UBR3-206ENST00000444475 C1orf115Q9H7X2 142 aa6.31□□□□□ -1.4
UBR3-206ENST00000444475 PDIA4P13667 645 aaKnown RBP6.3□□□□□ -1.4
UBR3-206ENST00000444475 SPRYD3Q8NCJ5 442 aa6.3□□□□□ -1.4
UBR3-206ENST00000444475 PUS7Q96PZ0 661 aaKnown RBP6.3□□□□□ -1.4
UBR3-206ENST00000444475 CDK11AQ9UQ88 783 aaPredicted RBP6.3□□□□□ -1.4
UBR3-206ENST00000444475 HSP90B1P14625 803 aaKnown RBP6.29□□□□□ -1.4
UBR3-206ENST00000444475 CDK11BP21127 795 aaKnown RBP6.28□□□□□ -1.4
UBR3-206ENST00000444475 VASPP50552 380 aaPredicted RBP6.26□□□□□ -1.41
UBR3-206ENST00000444475 UBE2Q2Q8WVN8 375 aa6.26□□□□□ -1.41
UBR3-206ENST00000444475 ZMYND15Q9H091 742 aa6.26□□□□□ -1.41
UBR3-206ENST00000444475 HMGB1P09429 215 aaKnown RBP6.26□□□□□ -1.41
UBR3-206ENST00000444475 RGS22Q8NE09 1264 aa6.24□□□□□ -1.41
UBR3-206ENST00000444475 PROM2Q8N271 834 aa6.24□□□□□ -1.41
UBR3-206ENST00000444475 ZBTB7CA1YPR0 619 aa6.23□□□□□ -1.41
UBR3-206ENST00000444475 RSPH6AQ9H0K4 717 aa6.22□□□□□ -1.41
UBR3-206ENST00000444475 SLC4A2P04920 1241 aa6.21□□□□□ -1.41
UBR3-206ENST00000444475 BRD2P25440 801 aaKnown RBP6.2□□□□□ -1.42
UBR3-206ENST00000444475 DHX37Q8IY37 1157 aaKnown RBP6.17□□□□□ -1.42
UBR3-206ENST00000444475 RGL2O15211 777 aa6.14□□□□□ -1.43
UBR3-206ENST00000444475 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.14□□□□□ -1.43
UBR3-206ENST00000444475 ARID3AQ99856 593 aa6.12□□□□□ -1.43
UBR3-206ENST00000444475 MYCNP04198 464 aaPredicted RBP6.12□□□□□ -1.43
UBR3-206ENST00000444475 FOXD1Q16676 465 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms