RNA–Protein interactions for RNA: ENST00000440400.1

ACTN4-204, Transcript of actinin alpha 4, humanhuman

TSL 5

Gene ACTN4, Length 3,180 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-204ENST00000440400 NISCHQ9Y2I1 1504 aa29.77■■■□□ 2.36
ACTN4-204ENST00000440400 CCDC180Q9P1Z9 1646 aa26.05■■□□□ 1.76
ACTN4-204ENST00000440400 ZCCHC6Q5VYS8 1495 aaKnown RBP25.13■■□□□ 1.61
ACTN4-204ENST00000440400 DCAF1Q9Y4B6 1507 aa24.82■■□□□ 1.56
ACTN4-204ENST00000440400 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
ACTN4-204ENST00000440400 NACADO15069 1562 aa24.07■■□□□ 1.44
ACTN4-204ENST00000440400 SHROOM4Q9ULL8 1493 aa23.97■■□□□ 1.43
ACTN4-204ENST00000440400 ABCC9O60706 1549 aa23.93■■□□□ 1.42
ACTN4-204ENST00000440400 DCAF8L2P0C7V8 631 aa23.79■■□□□ 1.4
ACTN4-204ENST00000440400 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
ACTN4-204ENST00000440400 SCRIBQ14160 1630 aa23.68■■□□□ 1.38
ACTN4-204ENST00000440400 UNC13AQ9UPW8 1703 aa23.43■■□□□ 1.34
ACTN4-204ENST00000440400 BICRAQ9NZM4 1560 aa23.11■■□□□ 1.29
ACTN4-204ENST00000440400 SUPT5HO00267 1087 aaKnown RBP23.11■■□□□ 1.29
ACTN4-204ENST00000440400 RSF1Q96T23 1441 aaPredicted RBP23.11■■□□□ 1.29
ACTN4-204ENST00000440400 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
ACTN4-204ENST00000440400 BAZ1AQ9NRL2 1556 aaPredicted RBP22.96■■□□□ 1.27
ACTN4-204ENST00000440400 MROH2BQ7Z745 1585 aa22.95■■□□□ 1.26
ACTN4-204ENST00000440400 SMARCA4P51532 1647 aa22.87■■□□□ 1.25
ACTN4-204ENST00000440400 WIZO95785 1651 aa22.79■■□□□ 1.24
ACTN4-204ENST00000440400 PEG3Q9GZU2 1588 aa22.74■■□□□ 1.23
ACTN4-204ENST00000440400 TOP2AP11388 1531 aaKnown RBP22.65■■□□□ 1.22
ACTN4-204ENST00000440400 EIF4G1Q04637 1599 aaKnown RBP22.54■■□□□ 1.2
ACTN4-204ENST00000440400 CHIC1Q5VXU3 224 aa22.51■■□□□ 1.19
ACTN4-204ENST00000440400 PABPN1Q86U42 306 aaKnown RBP eCLIP22.46■■□□□ 1.197e-9■■■□□ 16
ACTN4-204ENST00000440400 SMARCA2P51531 1590 aa22.43■■□□□ 1.18
ACTN4-204ENST00000440400 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
ACTN4-204ENST00000440400 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
ACTN4-204ENST00000440400 HMGXB3Q12766 1538 aa22.25■■□□□ 1.15
ACTN4-204ENST00000440400 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
ACTN4-204ENST00000440400 BAZ1BQ9UIG0 1483 aaKnown RBP22.16■■□□□ 1.14
ACTN4-204ENST00000440400 PRDM2Q13029 1718 aa21.88■■□□□ 1.09
ACTN4-204ENST00000440400 CC2D2AQ9P2K1 1620 aa21.88■■□□□ 1.09
ACTN4-204ENST00000440400 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
ACTN4-204ENST00000440400 TRIM41Q8WV44 630 aa21.83■■□□□ 1.08
ACTN4-204ENST00000440400 CFTRP13569 1480 aa21.73■■□□□ 1.07
ACTN4-204ENST00000440400 BIVM-ERCC5R4GMW8 1640 aa21.72■■□□□ 1.07
ACTN4-204ENST00000440400 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
ACTN4-204ENST00000440400 WRNQ14191 1432 aaPredicted RBP eCLIP21.67■■□□□ 1.06
ACTN4-204ENST00000440400 TOP2BQ02880 1626 aa21.67■■□□□ 1.06
ACTN4-204ENST00000440400 EEA1Q15075 1411 aa21.61■■□□□ 1.05
ACTN4-204ENST00000440400 LOC105371045A0A1W2PR82 267 aa21.49■■□□□ 1.03
ACTN4-204ENST00000440400 CADPSQ9ULU8 1353 aa21.49■■□□□ 1.03
ACTN4-204ENST00000440400 CUX1P39880 1505 aa21.47■■□□□ 1.03
ACTN4-204ENST00000440400 SOGA1O94964 1423 aa21.44■■□□□ 1.02
ACTN4-204ENST00000440400 KIF21BO75037 1637 aa21.42■■□□□ 1.02
ACTN4-204ENST00000440400 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
ACTN4-204ENST00000440400 RUSC2Q8N2Y8 1516 aa21.37■■□□□ 1.01
ACTN4-204ENST00000440400 FANCD2Q9BXW9 1451 aa21.25■□□□□ 0.99
ACTN4-204ENST00000440400 DNMBPQ6XZF7 1577 aa21.25■□□□□ 0.99
ACTN4-204ENST00000440400 GOLGA3Q08378 1498 aa21.24■□□□□ 0.99
ACTN4-204ENST00000440400 FAM9AQ8IZU1 332 aaPredicted RBP21.24■□□□□ 0.99
ACTN4-204ENST00000440400 CEP164Q9UPV0 1460 aa21.24■□□□□ 0.99
ACTN4-204ENST00000440400 TNIKQ9UKE5 1360 aa21.23■□□□□ 0.99
ACTN4-204ENST00000440400 CSRNP3Q8WYN3 585 aa21.22■□□□□ 0.99
ACTN4-204ENST00000440400 ERICH3Q5RHP9 1530 aa21.22■□□□□ 0.99
ACTN4-204ENST00000440400 NESP48681 1621 aa21.16■□□□□ 0.98
ACTN4-204ENST00000440400 PRXQ9BXM0 1461 aa21.16■□□□□ 0.98
ACTN4-204ENST00000440400 WDR97A6NE52 1622 aa21.15■□□□□ 0.98
ACTN4-204ENST00000440400 FGD5Q6ZNL6 1462 aa21.12■□□□□ 0.97
ACTN4-204ENST00000440400 TOPBP1Q92547 1522 aa21.11■□□□□ 0.97
ACTN4-204ENST00000440400 KIF21AQ7Z4S6 1674 aa21.1■□□□□ 0.97
ACTN4-204ENST00000440400 KIF27Q86VH2 1401 aa21.09■□□□□ 0.97
ACTN4-204ENST00000440400 CEP162Q5TB80 1403 aa21.07■□□□□ 0.96
ACTN4-204ENST00000440400 PDS5BQ9NTI5 1447 aa21.05■□□□□ 0.96
ACTN4-204ENST00000440400 URB2Q14146 1524 aaKnown RBP21.05■□□□□ 0.96
ACTN4-204ENST00000440400 ABCA10Q8WWZ4 1543 aa21.05■□□□□ 0.96
ACTN4-204ENST00000440400 RAPGEF2Q9Y4G8 1499 aa21.04■□□□□ 0.96
ACTN4-204ENST00000440400 POLA1P09884 1462 aaPredicted RBP21.01■□□□□ 0.95
ACTN4-204ENST00000440400 HRCP23327 699 aa20.97■□□□□ 0.95
ACTN4-204ENST00000440400 DNAJC5BQ9UF47 199 aa20.97■□□□□ 0.95
ACTN4-204ENST00000440400 ABCA5Q8WWZ7 1642 aa20.95■□□□□ 0.94
ACTN4-204ENST00000440400 CUX2O14529 1486 aa20.94■□□□□ 0.94
ACTN4-204ENST00000440400 CUL7Q14999 1698 aa20.92■□□□□ 0.94
ACTN4-204ENST00000440400 TARBP1Q13395 1621 aaKnown RBP20.91■□□□□ 0.94
ACTN4-204ENST00000440400 IGF1RP08069 1367 aa20.9■□□□□ 0.94
ACTN4-204ENST00000440400 WDR62O43379 1518 aa20.85■□□□□ 0.93
ACTN4-204ENST00000440400 MRC2Q9UBG0 1479 aa20.85■□□□□ 0.93
ACTN4-204ENST00000440400 RAD54L2Q9Y4B4 1467 aa20.84■□□□□ 0.93
ACTN4-204ENST00000440400 TRIM26Q12899 539 aaPredicted RBP20.83■□□□□ 0.92
ACTN4-204ENST00000440400 CLIP1P30622 1438 aa20.82■□□□□ 0.92
ACTN4-204ENST00000440400 PPARGC1BQ86YN6 1023 aaKnown RBP20.81■□□□□ 0.92
ACTN4-204ENST00000440400 PELP1Q8IZL8 1130 aaKnown RBP20.79■□□□□ 0.92
ACTN4-204ENST00000440400 UBTFP17480 764 aaKnown RBP20.77■□□□□ 0.92
ACTN4-204ENST00000440400 EHMT2Q96KQ7 1210 aa20.77■□□□□ 0.91
ACTN4-204ENST00000440400 VPS8Q8N3P4 1428 aa20.76■□□□□ 0.91
ACTN4-204ENST00000440400 THOC2Q8NI27 1593 aaKnown RBP20.76■□□□□ 0.91
ACTN4-204ENST00000440400 ARAP1Q96P48 1450 aa20.74■□□□□ 0.91
ACTN4-204ENST00000440400 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
ACTN4-204ENST00000440400 CTTNBP2Q8WZ74 1663 aa20.73■□□□□ 0.91
ACTN4-204ENST00000440400 CARMIL1Q5VZK9 1371 aa20.73■□□□□ 0.91
ACTN4-204ENST00000440400 PCGF6Q9BYE7 350 aa20.69■□□□□ 0.9
ACTN4-204ENST00000440400 GAPVD1Q14C86 1478 aa20.66■□□□□ 0.9
ACTN4-204ENST00000440400 ARHGAP35Q9NRY4 1499 aa20.65■□□□□ 0.9
ACTN4-204ENST00000440400 IFT140Q96RY7 1462 aa20.64■□□□□ 0.89
ACTN4-204ENST00000440400 EFCAB5A4FU69 1503 aa20.6■□□□□ 0.89
ACTN4-204ENST00000440400 ADAMTS12P58397 1594 aa20.6■□□□□ 0.89
ACTN4-204ENST00000440400 MAP3K1Q13233 1512 aa20.56■□□□□ 0.88
ACTN4-204ENST00000440400 SAMD9Q5K651 1589 aa20.55■□□□□ 0.88
ACTN4-204ENST00000440400 TDRD9Q8NDG6 1382 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms