RNA–Protein interactions for RNA: ENST00000435401.1

LINC00353-201, long intergenic non-protein coding RNA 353, humanhuman

TSL 5 BASIC

Gene LINC00353, Length 685 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00353-201ENST00000435401 AEBP2Q6ZN18 517 aaPredicted RBP26.48■■□□□ 1.83
LINC00353-201ENST00000435401 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
LINC00353-201ENST00000435401 SENP3Q9H4L4 574 aaPredicted RBP22.62■■□□□ 1.21
LINC00353-201ENST00000435401 PHF23Q9BUL5 403 aaPredicted RBP22.35■■□□□ 1.17
LINC00353-201ENST00000435401 FOXD1Q16676 465 aa21.03■□□□□ 0.96
LINC00353-201ENST00000435401 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
LINC00353-201ENST00000435401 PPP6R1Q9UPN7 881 aa19.77■□□□□ 0.76
LINC00353-201ENST00000435401 ADRA2BP18089 450 aa19.72■□□□□ 0.75
LINC00353-201ENST00000435401 PIAS4Q8N2W9 510 aaPredicted RBP19.7■□□□□ 0.74
LINC00353-201ENST00000435401 MSH5O43196 834 aa19.67■□□□□ 0.74
LINC00353-201ENST00000435401 POTEDQ86YR6 584 aa18.88■□□□□ 0.61
LINC00353-201ENST00000435401 SCAF1Q9H7N4 1312 aaKnown RBP18.14■□□□□ 0.49
LINC00353-201ENST00000435401 MAPK8IP2Q13387 824 aaPredicted RBP18.07■□□□□ 0.48
LINC00353-201ENST00000435401 DMRT2Q9Y5R5 561 aa17.96■□□□□ 0.47
LINC00353-201ENST00000435401 PPP4R3CPQ6ZMV5 832 aa17.84■□□□□ 0.45
LINC00353-201ENST00000435401 CNKSR2Q8WXI2 1034 aa17.49■□□□□ 0.39
LINC00353-201ENST00000435401 HOXD11P31277 338 aaPredicted RBP17.36■□□□□ 0.37
LINC00353-201ENST00000435401 RNF216Q9NWF9 866 aaPredicted RBP17.29■□□□□ 0.36
LINC00353-201ENST00000435401 NCBP3Q53F19 620 aaKnown RBP17.25■□□□□ 0.35
LINC00353-201ENST00000435401 DCAF8L1A6NGE4 600 aa17.2■□□□□ 0.34
LINC00353-201ENST00000435401 NPM3O75607 178 aaKnown RBP16.93■□□□□ 0.3
LINC00353-201ENST00000435401 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
LINC00353-201ENST00000435401 CACNB1Q02641 598 aaPredicted RBP16.77■□□□□ 0.28
LINC00353-201ENST00000435401 RNF39Q9H2S5 420 aa16.77■□□□□ 0.28
LINC00353-201ENST00000435401 KCNA4P22459 653 aa16.73■□□□□ 0.27
LINC00353-201ENST00000435401 C1QBPQ07021 282 aaKnown RBP16.57■□□□□ 0.24
LINC00353-201ENST00000435401 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.56■□□□□ 0.24
LINC00353-201ENST00000435401 U3KPZ7 1027 aaPredicted RBP16.18■□□□□ 0.18
LINC00353-201ENST00000435401 SLC4A2P04920 1241 aa16.12■□□□□ 0.17
LINC00353-201ENST00000435401 CAPN15O75808 1086 aa15.89■□□□□ 0.13
LINC00353-201ENST00000435401 SPINK5Q9NQ38 1064 aaPredicted RBP15.89■□□□□ 0.13
LINC00353-201ENST00000435401 SLC4A1APQ9BWU0 796 aaKnown RBP15.86■□□□□ 0.13
LINC00353-201ENST00000435401 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.85■□□□□ 0.13
LINC00353-201ENST00000435401 HNRNPUL2Q1KMD3 747 aaKnown RBP15.85■□□□□ 0.13
LINC00353-201ENST00000435401 APLP2Q06481 763 aa15.84■□□□□ 0.13
LINC00353-201ENST00000435401 DSG3P32926 999 aa15.75■□□□□ 0.11
LINC00353-201ENST00000435401 SAMD1Q6SPF0 538 aaPredicted RBP15.75■□□□□ 0.11
LINC00353-201ENST00000435401 MYCNP04198 464 aaPredicted RBP15.68■□□□□ 0.1
LINC00353-201ENST00000435401 TRHP20396 242 aaPredicted RBP15.67■□□□□ 0.1
LINC00353-201ENST00000435401 ZNF219Q9P2Y4 722 aaPredicted RBP15.67■□□□□ 0.1
LINC00353-201ENST00000435401 FOXD4L1Q9NU39 408 aa15.59■□□□□ 0.09
LINC00353-201ENST00000435401 ABCB7O75027 752 aa15.51■□□□□ 0.07
LINC00353-201ENST00000435401 ZBTB22O15209 634 aa15.35■□□□□ 0.05
LINC00353-201ENST00000435401 POLA2Q14181 598 aa15.3■□□□□ 0.04
LINC00353-201ENST00000435401 ATF5Q9Y2D1 282 aaPredicted RBP15.26■□□□□ 0.03
LINC00353-201ENST00000435401 ATXN8OSP0DMR3 200 aa15.14■□□□□ 0.01
LINC00353-201ENST00000435401 RBM42Q9BTD8 480 aaKnown RBP15.07■□□□□ 0
LINC00353-201ENST00000435401 ZBTB12Q9Y330 459 aaPredicted RBP15.04■□□□□ -0
LINC00353-201ENST00000435401 POTEHQ6S545 545 aa14.85□□□□□ -0.03
LINC00353-201ENST00000435401 CSRNP3Q8WYN3 585 aa14.82□□□□□ -0.04
LINC00353-201ENST00000435401 OSCARQ8IYS5 282 aa14.76□□□□□ -0.05
LINC00353-201ENST00000435401 AKT1S1Q96B36 256 aa14.75□□□□□ -0.05
LINC00353-201ENST00000435401 FBLN2P98095 1184 aa14.73□□□□□ -0.05
LINC00353-201ENST00000435401 EHMT2Q96KQ7 1210 aa14.69□□□□□ -0.06
LINC00353-201ENST00000435401 CHRDL2Q6WN34 429 aa14.64□□□□□ -0.07
LINC00353-201ENST00000435401 REM2Q8IYK8 340 aaPredicted RBP14.59□□□□□ -0.07
LINC00353-201ENST00000435401 SPDYE2BA6NHP3 402 aa14.57□□□□□ -0.08
LINC00353-201ENST00000435401 SPDYE6P0CI01 402 aa14.57□□□□□ -0.08
LINC00353-201ENST00000435401 MKRN4PQ13434 485 aaPredicted RBP14.57□□□□□ -0.08
LINC00353-201ENST00000435401 SPDYE2Q495Y8 402 aa14.57□□□□□ -0.08
LINC00353-201ENST00000435401 ZNF692Q9BU19 519 aaPredicted RBP14.42□□□□□ -0.1
LINC00353-201ENST00000435401 PITPNM1O00562 1244 aa14.41□□□□□ -0.1
LINC00353-201ENST00000435401 SSUH2Q9Y2M2 353 aa14.36□□□□□ -0.11
LINC00353-201ENST00000435401 PIP4P2Q8N4L2 257 aa14.32□□□□□ -0.12
LINC00353-201ENST00000435401 FXR2P51116 673 aaKnown RBP eCLIP14.28□□□□□ -0.12
LINC00353-201ENST00000435401 SPDYE1Q8NFV5 336 aaPredicted RBP14.27□□□□□ -0.13
LINC00353-201ENST00000435401 CLEC11AQ9Y240 323 aa14.23□□□□□ -0.13
LINC00353-201ENST00000435401 PABPN1Q86U42 306 aaKnown RBP eCLIP14.19□□□□□ -0.14
LINC00353-201ENST00000435401 PRKAR2AP13861 404 aaKnown RBP14.06□□□□□ -0.16
LINC00353-201ENST00000435401 HAX1O00165 279 aa14.04□□□□□ -0.16
LINC00353-201ENST00000435401 PRR29P0C7W0 189 aa14.04□□□□□ -0.16
LINC00353-201ENST00000435401 SPDYE4A6NLX3 237 aa14□□□□□ -0.17
LINC00353-201ENST00000435401 SP7Q8TDD2 431 aaPredicted RBP13.99□□□□□ -0.17
LINC00353-201ENST00000435401 CHADLQ6NUI6 762 aa13.91□□□□□ -0.18
LINC00353-201ENST00000435401 STAG3Q9UJ98 1225 aa13.9□□□□□ -0.18
LINC00353-201ENST00000435401 EVX2Q03828 476 aa13.83□□□□□ -0.2
LINC00353-201ENST00000435401 C19orf67A6NJJ6 358 aa13.82□□□□□ -0.2
LINC00353-201ENST00000435401 FARP1Q9Y4F1 1045 aaPredicted RBP13.75□□□□□ -0.21
LINC00353-201ENST00000435401 CREBZFQ9NS37 354 aa13.69□□□□□ -0.22
LINC00353-201ENST00000435401 PROM2Q8N271 834 aa13.67□□□□□ -0.22
LINC00353-201ENST00000435401 CD44P16070 742 aaKnown RBP13.61□□□□□ -0.23
LINC00353-201ENST00000435401 GABBR2O75899 941 aa13.57□□□□□ -0.24
LINC00353-201ENST00000435401 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
LINC00353-201ENST00000435401 CLCN6P51797 869 aa13.49□□□□□ -0.25
LINC00353-201ENST00000435401 MNX1P50219 401 aaPredicted RBP13.46□□□□□ -0.25
LINC00353-201ENST00000435401 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
LINC00353-201ENST00000435401 FKBP8Q14318 412 aa13.44□□□□□ -0.26
LINC00353-201ENST00000435401 PAK3O75914 559 aaPredicted RBP13.42□□□□□ -0.26
LINC00353-201ENST00000435401 ZNF579Q8NAF0 562 aaKnown RBP13.42□□□□□ -0.26
LINC00353-201ENST00000435401 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
LINC00353-201ENST00000435401 MIER1Q8N108 512 aa13.37□□□□□ -0.27
LINC00353-201ENST00000435401 PLCD3Q8N3E9 789 aa13.27□□□□□ -0.29
LINC00353-201ENST00000435401 DCBLD2Q96PD2 775 aa13.26□□□□□ -0.29
LINC00353-201ENST00000435401 POTEIP0CG38 1075 aa13.25□□□□□ -0.29
LINC00353-201ENST00000435401 PHF12Q96QT6 1004 aa13.25□□□□□ -0.29
LINC00353-201ENST00000435401 GALR2O43603 387 aaPredicted RBP13.22□□□□□ -0.29
LINC00353-201ENST00000435401 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
LINC00353-201ENST00000435401 ZBTB47Q9UFB7 747 aaPredicted RBP13.2□□□□□ -0.3
LINC00353-201ENST00000435401 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
LINC00353-201ENST00000435401 LHX8Q68G74 356 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms