RNA–Protein interactions for RNA: ENST00000431387.8

NF1-204, Transcript of neurofibromin 1, humanhuman

TSL 1 (best) BASIC

Gene NF1, Length 2,889 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-204ENST00000431387 NISCHQ9Y2I1 1504 aa27.88■■■□□ 2.05
NF1-204ENST00000431387 SHROOM4Q9ULL8 1493 aa23.83■■□□□ 1.41
NF1-204ENST00000431387 CCDC180Q9P1Z9 1646 aa23.65■■□□□ 1.38
NF1-204ENST00000431387 ZCCHC6Q5VYS8 1495 aaKnown RBP23.59■■□□□ 1.37
NF1-204ENST00000431387 SUPT5HO00267 1087 aaKnown RBP23.39■■□□□ 1.33
NF1-204ENST00000431387 DCAF8L2P0C7V8 631 aa23.12■■□□□ 1.29
NF1-204ENST00000431387 DCAF1Q9Y4B6 1507 aa22.85■■□□□ 1.25
NF1-204ENST00000431387 CHIC1Q5VXU3 224 aa22.77■■□□□ 1.24
NF1-204ENST00000431387 HRCP23327 699 aa22.72■■□□□ 1.23
NF1-204ENST00000431387 MYO15BQ96JP2 1530 aa22.7■■□□□ 1.22
NF1-204ENST00000431387 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
NF1-204ENST00000431387 PPARGC1BQ86YN6 1023 aaKnown RBP22.46■■□□□ 1.19
NF1-204ENST00000431387 ABCC9O60706 1549 aa22.27■■□□□ 1.15
NF1-204ENST00000431387 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
NF1-204ENST00000431387 LOC105371045A0A1W2PR82 267 aa22.11■■□□□ 1.13
NF1-204ENST00000431387 RSF1Q96T23 1441 aaPredicted RBP22.09■■□□□ 1.13
NF1-204ENST00000431387 NACADO15069 1562 aa21.86■■□□□ 1.09
NF1-204ENST00000431387 RB1CC1Q8TDY2 1594 aa21.86■■□□□ 1.09
NF1-204ENST00000431387 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
NF1-204ENST00000431387 CECR2Q9BXF3 1484 aa21.76■■□□□ 1.07
NF1-204ENST00000431387 MROH2BQ7Z745 1585 aa21.69■■□□□ 1.06
NF1-204ENST00000431387 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
NF1-204ENST00000431387 FAM9AQ8IZU1 332 aaPredicted RBP21.62■■□□□ 1.05
NF1-204ENST00000431387 WIZO95785 1651 aa21.57■■□□□ 1.04
NF1-204ENST00000431387 SCAF1Q9H7N4 1312 aaKnown RBP21.48■■□□□ 1.03
NF1-204ENST00000431387 PELP1Q8IZL8 1130 aaKnown RBP21.45■■□□□ 1.02
NF1-204ENST00000431387 EHMT2Q96KQ7 1210 aa21.44■■□□□ 1.02
NF1-204ENST00000431387 BAZ1AQ9NRL2 1556 aaPredicted RBP21.43■■□□□ 1.02
NF1-204ENST00000431387 EIF4G1Q04637 1599 aaKnown RBP21.3■■□□□ 1
NF1-204ENST00000431387 ZEB1P37275 1124 aaPredicted RBP21.29■■□□□ 1
NF1-204ENST00000431387 TOP2AP11388 1531 aaKnown RBP21.22■□□□□ 0.99
NF1-204ENST00000431387 SMARCA4P51532 1647 aa21.22■□□□□ 0.99
NF1-204ENST00000431387 UNC13AQ9UPW8 1703 aa21.18■□□□□ 0.98
NF1-204ENST00000431387 CCDC88BA6NC98 1476 aa21.15■□□□□ 0.98
NF1-204ENST00000431387 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
NF1-204ENST00000431387 ABCC8Q09428 1581 aa21.11■□□□□ 0.97
NF1-204ENST00000431387 PABPN1Q86U42 306 aaKnown RBP eCLIP20.98■□□□□ 0.95
NF1-204ENST00000431387 NEUROD1Q13562 356 aa20.97■□□□□ 0.95
NF1-204ENST00000431387 SOGA1O94964 1423 aa20.94■□□□□ 0.94
NF1-204ENST00000431387 BICRAQ9NZM4 1560 aa20.93■□□□□ 0.94
NF1-204ENST00000431387 ACIN1Q9UKV3 1341 aaKnown RBP20.93■□□□□ 0.94
NF1-204ENST00000431387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.91■□□□□ 0.94
NF1-204ENST00000431387 CEP162Q5TB80 1403 aa20.85■□□□□ 0.93
NF1-204ENST00000431387 RUSC2Q8N2Y8 1516 aa20.83■□□□□ 0.93
NF1-204ENST00000431387 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.932e-6■■■■□ 22.3
NF1-204ENST00000431387 GTF3C3Q9Y5Q9 886 aa20.83■□□□□ 0.92
NF1-204ENST00000431387 CSRNP3Q8WYN3 585 aa20.81■□□□□ 0.92
NF1-204ENST00000431387 TNIKQ9UKE5 1360 aa20.81■□□□□ 0.92
NF1-204ENST00000431387 EEA1Q15075 1411 aa20.8■□□□□ 0.92
NF1-204ENST00000431387 PEG3Q9GZU2 1588 aa20.8■□□□□ 0.92
NF1-204ENST00000431387 CCER1Q8TC90 406 aaPredicted RBP20.79■□□□□ 0.92
NF1-204ENST00000431387 TTBK1Q5TCY1 1321 aaPredicted RBP20.76■□□□□ 0.91
NF1-204ENST00000431387 UBTFP17480 764 aaKnown RBP20.74■□□□□ 0.91
NF1-204ENST00000431387 DIEXFQ68CQ4 756 aaKnown RBP20.7■□□□□ 0.9
NF1-204ENST00000431387 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
NF1-204ENST00000431387 ATAD2BQ9ULI0 1458 aa20.67■□□□□ 0.9
NF1-204ENST00000431387 SYNJ1O43426 1573 aa20.65■□□□□ 0.9
NF1-204ENST00000431387 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
NF1-204ENST00000431387 BAZ1BQ9UIG0 1483 aaKnown RBP20.61■□□□□ 0.89
NF1-204ENST00000431387 CEP164Q9UPV0 1460 aa20.56■□□□□ 0.88
NF1-204ENST00000431387 KIF21BO75037 1637 aa20.52■□□□□ 0.88
NF1-204ENST00000431387 YTHDC1Q96MU7 727 aaKnown RBP20.5■□□□□ 0.87
NF1-204ENST00000431387 MYT1Q01538 1121 aa20.47■□□□□ 0.87
NF1-204ENST00000431387 CLIP1P30622 1438 aa20.45■□□□□ 0.86
NF1-204ENST00000431387 RAPGEF2Q9Y4G8 1499 aa20.42■□□□□ 0.86
NF1-204ENST00000431387 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
NF1-204ENST00000431387 VPS8Q8N3P4 1428 aa20.37■□□□□ 0.85
NF1-204ENST00000431387 RANGAP1P46060 587 aaPredicted RBP20.32■□□□□ 0.84
NF1-204ENST00000431387 HNRNPUL2Q1KMD3 747 aaKnown RBP20.32■□□□□ 0.84
NF1-204ENST00000431387 BIVM-ERCC5R4GMW8 1640 aa20.3■□□□□ 0.84
NF1-204ENST00000431387 ZNF316A6NFI3 1004 aaPredicted RBP20.29■□□□□ 0.84
NF1-204ENST00000431387 APLP2Q06481 763 aa20.27■□□□□ 0.84
NF1-204ENST00000431387 NCAPD3P42695 1498 aa20.25■□□□□ 0.83
NF1-204ENST00000431387 MIER1Q8N108 512 aa20.24■□□□□ 0.83
NF1-204ENST00000431387 HMGXB3Q12766 1538 aa20.24■□□□□ 0.83
NF1-204ENST00000431387 PRXQ9BXM0 1461 aa20.2■□□□□ 0.82
NF1-204ENST00000431387 CUX1P39880 1505 aa20.19■□□□□ 0.82
NF1-204ENST00000431387 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
NF1-204ENST00000431387 ARAP1Q96P48 1450 aa20.12■□□□□ 0.81
NF1-204ENST00000431387 CFTRP13569 1480 aa20.11■□□□□ 0.81
NF1-204ENST00000431387 KIF27Q86VH2 1401 aa20.09■□□□□ 0.81
NF1-204ENST00000431387 KANK4Q5T7N3 995 aaPredicted RBP20.04■□□□□ 0.8
NF1-204ENST00000431387 ARHGAP35Q9NRY4 1499 aa19.94■□□□□ 0.78
NF1-204ENST00000431387 DHX57Q6P158 1386 aaKnown RBP19.92■□□□□ 0.78
NF1-204ENST00000431387 PRDM2Q13029 1718 aa19.9■□□□□ 0.78
NF1-204ENST00000431387 RRBP1Q9P2E9 1410 aaKnown RBP19.9■□□□□ 0.78
NF1-204ENST00000431387 CUX2O14529 1486 aa19.9■□□□□ 0.78
NF1-204ENST00000431387 IGF1RP08069 1367 aa19.89■□□□□ 0.77
NF1-204ENST00000431387 CLSPNQ9HAW4 1339 aa19.88■□□□□ 0.77
NF1-204ENST00000431387 CADPSQ9ULU8 1353 aa19.87■□□□□ 0.77
NF1-204ENST00000431387 CCNB3Q8WWL7 1395 aa19.82■□□□□ 0.76
NF1-204ENST00000431387 SUPT16HQ9Y5B9 1047 aaKnown RBP19.82■□□□□ 0.76
NF1-204ENST00000431387 FGD5Q6ZNL6 1462 aa19.82■□□□□ 0.76
NF1-204ENST00000431387 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
NF1-204ENST00000431387 ITGAEP38570 1179 aa19.76■□□□□ 0.75
NF1-204ENST00000431387 TIAM1Q13009 1591 aa19.72■□□□□ 0.75
NF1-204ENST00000431387 CC2D2AQ9P2K1 1620 aa19.71■□□□□ 0.74
NF1-204ENST00000431387 TSHZ2Q9NRE2 1034 aa19.7■□□□□ 0.74
NF1-204ENST00000431387 MAP3K1Q13233 1512 aa19.7■□□□□ 0.74
NF1-204ENST00000431387 FANCD2Q9BXW9 1451 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms