RNA–Protein interactions for RNA: ENST00000431183.6

SMPD4-205, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,614 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-205ENST00000431183 NISCHQ9Y2I1 1504 aa24.02■■□□□ 1.44
SMPD4-205ENST00000431183 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
SMPD4-205ENST00000431183 SHROOM4Q9ULL8 1493 aa21.05■□□□□ 0.96
SMPD4-205ENST00000431183 ABCC9O60706 1549 aa20.48■□□□□ 0.87
SMPD4-205ENST00000431183 SUPT5HO00267 1087 aaKnown RBP20.39■□□□□ 0.86
SMPD4-205ENST00000431183 CCDC180Q9P1Z9 1646 aa20.29■□□□□ 0.84
SMPD4-205ENST00000431183 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
SMPD4-205ENST00000431183 PABPN1Q86U42 306 aaKnown RBP eCLIP19.77■□□□□ 0.752e-6■■□□□ 12.8
SMPD4-205ENST00000431183 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
SMPD4-205ENST00000431183 EHMT2Q96KQ7 1210 aa19.29■□□□□ 0.68
SMPD4-205ENST00000431183 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
SMPD4-205ENST00000431183 NACADO15069 1562 aa19.2■□□□□ 0.66
SMPD4-205ENST00000431183 RB1CC1Q8TDY2 1594 aa19.2■□□□□ 0.66
SMPD4-205ENST00000431183 CECR2Q9BXF3 1484 aa19.11■□□□□ 0.65
SMPD4-205ENST00000431183 FAM9AQ8IZU1 332 aaPredicted RBP19.05■□□□□ 0.64
SMPD4-205ENST00000431183 RSF1Q96T23 1441 aaPredicted RBP18.92■□□□□ 0.62
SMPD4-205ENST00000431183 CHIC1Q5VXU3 224 aa18.92■□□□□ 0.62
SMPD4-205ENST00000431183 MYO15BQ96JP2 1530 aa18.87■□□□□ 0.61
SMPD4-205ENST00000431183 MROH2BQ7Z745 1585 aa18.81■□□□□ 0.6
SMPD4-205ENST00000431183 TRIM41Q8WV44 630 aa18.79■□□□□ 0.6
SMPD4-205ENST00000431183 LOC105371045A0A1W2PR82 267 aa18.72■□□□□ 0.59
SMPD4-205ENST00000431183 WIZO95785 1651 aa18.63■□□□□ 0.57
SMPD4-205ENST00000431183 UNC13AQ9UPW8 1703 aa18.59■□□□□ 0.57
SMPD4-205ENST00000431183 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
SMPD4-205ENST00000431183 RANGAP1P46060 587 aaPredicted RBP18.52■□□□□ 0.56
SMPD4-205ENST00000431183 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
SMPD4-205ENST00000431183 TTBK1Q5TCY1 1321 aaPredicted RBP18.38■□□□□ 0.53
SMPD4-205ENST00000431183 DNAJC5BQ9UF47 199 aa18.38■□□□□ 0.53
SMPD4-205ENST00000431183 SMARCA4P51532 1647 aa18.38■□□□□ 0.53
SMPD4-205ENST00000431183 PPARGC1BQ86YN6 1023 aaKnown RBP18.33■□□□□ 0.53
SMPD4-205ENST00000431183 BAZ1BQ9UIG0 1483 aaKnown RBP18.32■□□□□ 0.52
SMPD4-205ENST00000431183 CCDC88BA6NC98 1476 aa18.31■□□□□ 0.52
SMPD4-205ENST00000431183 ATAD2BQ9ULI0 1458 aa18.26■□□□□ 0.51
SMPD4-205ENST00000431183 UBTFP17480 764 aaKnown RBP18.19■□□□□ 0.5
SMPD4-205ENST00000431183 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
SMPD4-205ENST00000431183 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
SMPD4-205ENST00000431183 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
SMPD4-205ENST00000431183 PCGF6Q9BYE7 350 aa18.05■□□□□ 0.48
SMPD4-205ENST00000431183 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
SMPD4-205ENST00000431183 CC2D2AQ9P2K1 1620 aa17.98■□□□□ 0.47
SMPD4-205ENST00000431183 SOGA1O94964 1423 aa17.95■□□□□ 0.46
SMPD4-205ENST00000431183 WRNQ14191 1432 aaPredicted RBP eCLIP17.93■□□□□ 0.465e-6■■■■■ 34.5
SMPD4-205ENST00000431183 CSRNP3Q8WYN3 585 aa17.9■□□□□ 0.46
SMPD4-205ENST00000431183 NCAPD3P42695 1498 aa17.89■□□□□ 0.45
SMPD4-205ENST00000431183 RUSC2Q8N2Y8 1516 aa17.88■□□□□ 0.45
SMPD4-205ENST00000431183 NESP48681 1621 aa17.88■□□□□ 0.45
SMPD4-205ENST00000431183 ATP1B4Q9UN42 357 aaPredicted RBP17.85■□□□□ 0.45
SMPD4-205ENST00000431183 CADPSQ9ULU8 1353 aa17.77■□□□□ 0.44
SMPD4-205ENST00000431183 P3H3Q8IVL6 736 aa17.76■□□□□ 0.43
SMPD4-205ENST00000431183 PEG3Q9GZU2 1588 aa17.71■□□□□ 0.43
SMPD4-205ENST00000431183 FBLN2P98095 1184 aa17.71■□□□□ 0.42
SMPD4-205ENST00000431183 SYNJ1O43426 1573 aa17.64■□□□□ 0.41
SMPD4-205ENST00000431183 HMGXB3Q12766 1538 aa17.64■□□□□ 0.41
SMPD4-205ENST00000431183 APLP2Q06481 763 aa17.61■□□□□ 0.41
SMPD4-205ENST00000431183 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
SMPD4-205ENST00000431183 FANCD2Q9BXW9 1451 aa17.61■□□□□ 0.41
SMPD4-205ENST00000431183 CFTRP13569 1480 aa17.59■□□□□ 0.41
SMPD4-205ENST00000431183 TDRD9Q8NDG6 1382 aaKnown RBP17.59■□□□□ 0.41
SMPD4-205ENST00000431183 CUX2O14529 1486 aa17.55■□□□□ 0.4
SMPD4-205ENST00000431183 RAD54L2Q9Y4B4 1467 aa17.55■□□□□ 0.4
SMPD4-205ENST00000431183 ERCC6Q03468 1493 aa17.54■□□□□ 0.4
SMPD4-205ENST00000431183 CUX1P39880 1505 aa17.5■□□□□ 0.39
SMPD4-205ENST00000431183 ITGAEP38570 1179 aa17.47■□□□□ 0.39
SMPD4-205ENST00000431183 RAPGEF2Q9Y4G8 1499 aa17.45■□□□□ 0.38
SMPD4-205ENST00000431183 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
SMPD4-205ENST00000431183 PDS5BQ9NTI5 1447 aa17.45■□□□□ 0.38
SMPD4-205ENST00000431183 TRIM26Q12899 539 aaPredicted RBP17.45■□□□□ 0.38
SMPD4-205ENST00000431183 FGD5Q6ZNL6 1462 aa17.45■□□□□ 0.38
SMPD4-205ENST00000431183 KIF27Q86VH2 1401 aa17.44■□□□□ 0.38
SMPD4-205ENST00000431183 CEP164Q9UPV0 1460 aa17.44■□□□□ 0.38
SMPD4-205ENST00000431183 HNRNPUL2Q1KMD3 747 aaKnown RBP17.43■□□□□ 0.38
SMPD4-205ENST00000431183 HRCP23327 699 aa17.41■□□□□ 0.38
SMPD4-205ENST00000431183 GOLGA3Q08378 1498 aa17.37■□□□□ 0.37
SMPD4-205ENST00000431183 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
SMPD4-205ENST00000431183 CLIP1P30622 1438 aa17.35■□□□□ 0.37
SMPD4-205ENST00000431183 CARMIL1Q5VZK9 1371 aa17.35■□□□□ 0.37
SMPD4-205ENST00000431183 AQRO60306 1485 aaKnown RBP eCLIP17.32■□□□□ 0.367e-7■■■■□ 21.1
SMPD4-205ENST00000431183 TNIKQ9UKE5 1360 aa17.31■□□□□ 0.36
SMPD4-205ENST00000431183 EEA1Q15075 1411 aa17.31■□□□□ 0.36
SMPD4-205ENST00000431183 TOP2BQ02880 1626 aa17.3■□□□□ 0.36
SMPD4-205ENST00000431183 IGF1RP08069 1367 aa17.3■□□□□ 0.36
SMPD4-205ENST00000431183 TOPBP1Q92547 1522 aa17.3■□□□□ 0.36
SMPD4-205ENST00000431183 POLA1P09884 1462 aaPredicted RBP17.29■□□□□ 0.36
SMPD4-205ENST00000431183 CHMP7Q8WUX9 453 aaPredicted RBP17.28■□□□□ 0.36
SMPD4-205ENST00000431183 URB2Q14146 1524 aaKnown RBP17.28■□□□□ 0.36
SMPD4-205ENST00000431183 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
SMPD4-205ENST00000431183 KANK4Q5T7N3 995 aaPredicted RBP17.18■□□□□ 0.34
SMPD4-205ENST00000431183 LAMC3Q9Y6N6 1575 aa17.16■□□□□ 0.34
SMPD4-205ENST00000431183 KIF21AQ7Z4S6 1674 aa17.15■□□□□ 0.34
SMPD4-205ENST00000431183 ZNF608Q9ULD9 1512 aaPredicted RBP17.14■□□□□ 0.34
SMPD4-205ENST00000431183 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
SMPD4-205ENST00000431183 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
SMPD4-205ENST00000431183 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
SMPD4-205ENST00000431183 MRC2Q9UBG0 1479 aa17.09■□□□□ 0.33
SMPD4-205ENST00000431183 BIVM-ERCC5R4GMW8 1640 aa17.08■□□□□ 0.32
SMPD4-205ENST00000431183 FHOD3Q2V2M9 1422 aa17.08■□□□□ 0.32
SMPD4-205ENST00000431183 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
SMPD4-205ENST00000431183 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
SMPD4-205ENST00000431183 ABCA10Q8WWZ4 1543 aa16.98■□□□□ 0.31
SMPD4-205ENST00000431183 VPS8Q8N3P4 1428 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms