RNA–Protein interactions for RNA: ENST00000429856.1

HMGB1P9-201, Transcript of high mobility group box 1 pseudogene 9, humanhuman

BASIC

Gene HMGB1P9, Length 646 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P9-201ENST00000429856 AEBP2Q6ZN18 517 aaPredicted RBP19.62■□□□□ 0.73
HMGB1P9-201ENST00000429856 CHIC1Q5VXU3 224 aa18.46■□□□□ 0.55
HMGB1P9-201ENST00000429856 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
HMGB1P9-201ENST00000429856 PHF23Q9BUL5 403 aaPredicted RBP16.61■□□□□ 0.25
HMGB1P9-201ENST00000429856 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
HMGB1P9-201ENST00000429856 FOXD1Q16676 465 aa15.71■□□□□ 0.11
HMGB1P9-201ENST00000429856 MSH5O43196 834 aa14.88□□□□□ -0.03
HMGB1P9-201ENST00000429856 PLPPR3Q6T4P5 718 aa14.67□□□□□ -0.06
HMGB1P9-201ENST00000429856 PIAS4Q8N2W9 510 aaPredicted RBP14.65□□□□□ -0.06
HMGB1P9-201ENST00000429856 PPP6R1Q9UPN7 881 aa14.47□□□□□ -0.09
HMGB1P9-201ENST00000429856 ADRA2BP18089 450 aa14.44□□□□□ -0.1
HMGB1P9-201ENST00000429856 SCAF1Q9H7N4 1312 aaKnown RBP13.35□□□□□ -0.27
HMGB1P9-201ENST00000429856 MAPK8IP2Q13387 824 aaPredicted RBP13.33□□□□□ -0.28
HMGB1P9-201ENST00000429856 DMRT2Q9Y5R5 561 aa13.32□□□□□ -0.28
HMGB1P9-201ENST00000429856 CACNB1Q02641 598 aaPredicted RBP13.27□□□□□ -0.29
HMGB1P9-201ENST00000429856 DCAF8L1A6NGE4 600 aa12.84□□□□□ -0.35
HMGB1P9-201ENST00000429856 PPP4R3CPQ6ZMV5 832 aa12.8□□□□□ -0.36
HMGB1P9-201ENST00000429856 HOXD11P31277 338 aaPredicted RBP12.72□□□□□ -0.37
HMGB1P9-201ENST00000429856 CNKSR2Q8WXI2 1034 aa12.65□□□□□ -0.38
HMGB1P9-201ENST00000429856 RNF39Q9H2S5 420 aa12.63□□□□□ -0.39
HMGB1P9-201ENST00000429856 RNF216Q9NWF9 866 aaPredicted RBP12.59□□□□□ -0.39
HMGB1P9-201ENST00000429856 POTEHQ6S545 545 aa12.49□□□□□ -0.41
HMGB1P9-201ENST00000429856 C1QBPQ07021 282 aaKnown RBP12.48□□□□□ -0.41
HMGB1P9-201ENST00000429856 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
HMGB1P9-201ENST00000429856 NCBP3Q53F19 620 aaKnown RBP12.32□□□□□ -0.44
HMGB1P9-201ENST00000429856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.19□□□□□ -0.46
HMGB1P9-201ENST00000429856 NPM3O75607 178 aaKnown RBP12.02□□□□□ -0.49
HMGB1P9-201ENST00000429856 U3KPZ7 1027 aaPredicted RBP11.81□□□□□ -0.52
HMGB1P9-201ENST00000429856 CAPN15O75808 1086 aa11.79□□□□□ -0.52
HMGB1P9-201ENST00000429856 DSG3P32926 999 aa11.73□□□□□ -0.53
HMGB1P9-201ENST00000429856 SPINK5Q9NQ38 1064 aaPredicted RBP11.72□□□□□ -0.53
HMGB1P9-201ENST00000429856 APLP2Q06481 763 aa11.61□□□□□ -0.55
HMGB1P9-201ENST00000429856 KCNA4P22459 653 aa11.55□□□□□ -0.56
HMGB1P9-201ENST00000429856 TRHP20396 242 aaPredicted RBP11.53□□□□□ -0.56
HMGB1P9-201ENST00000429856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.52□□□□□ -0.57
HMGB1P9-201ENST00000429856 SLC4A2P04920 1241 aa11.52□□□□□ -0.57
HMGB1P9-201ENST00000429856 HNRNPUL2Q1KMD3 747 aaKnown RBP11.52□□□□□ -0.57
HMGB1P9-201ENST00000429856 ZNF219Q9P2Y4 722 aaPredicted RBP11.51□□□□□ -0.57
HMGB1P9-201ENST00000429856 ABCB7O75027 752 aa11.44□□□□□ -0.58
HMGB1P9-201ENST00000429856 SAMD1Q6SPF0 538 aaPredicted RBP11.41□□□□□ -0.58
HMGB1P9-201ENST00000429856 RBM42Q9BTD8 480 aaKnown RBP11.28□□□□□ -0.6
HMGB1P9-201ENST00000429856 SP7Q8TDD2 431 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P9-201ENST00000429856 MYCNP04198 464 aaPredicted RBP11.16□□□□□ -0.62
HMGB1P9-201ENST00000429856 POLA2Q14181 598 aa11.16□□□□□ -0.62
HMGB1P9-201ENST00000429856 CHRDL2Q6WN34 429 aa11.09□□□□□ -0.63
HMGB1P9-201ENST00000429856 ZBTB12Q9Y330 459 aaPredicted RBP10.96□□□□□ -0.65
HMGB1P9-201ENST00000429856 AKT1S1Q96B36 256 aa10.94□□□□□ -0.66
HMGB1P9-201ENST00000429856 SLC4A1APQ9BWU0 796 aaKnown RBP10.91□□□□□ -0.66
HMGB1P9-201ENST00000429856 FOXD4L1Q9NU39 408 aa10.9□□□□□ -0.66
HMGB1P9-201ENST00000429856 ATF5Q9Y2D1 282 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P9-201ENST00000429856 REM2Q8IYK8 340 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P9-201ENST00000429856 OSCARQ8IYS5 282 aa10.75□□□□□ -0.69
HMGB1P9-201ENST00000429856 PIP4P2Q8N4L2 257 aa10.74□□□□□ -0.69
HMGB1P9-201ENST00000429856 HAX1O00165 279 aa10.69□□□□□ -0.7
HMGB1P9-201ENST00000429856 PLSCR2Q9NRY7 297 aa10.69□□□□□ -0.7
HMGB1P9-201ENST00000429856 PITPNM1O00562 1244 aa10.66□□□□□ -0.7
HMGB1P9-201ENST00000429856 FXR2P51116 673 aaKnown RBP eCLIP10.64□□□□□ -0.71
HMGB1P9-201ENST00000429856 ATXN8OSP0DMR3 200 aa10.63□□□□□ -0.71
HMGB1P9-201ENST00000429856 EVX2Q03828 476 aa10.61□□□□□ -0.71
HMGB1P9-201ENST00000429856 FBLN2P98095 1184 aa10.58□□□□□ -0.72
HMGB1P9-201ENST00000429856 SPDYE2BA6NHP3 402 aa10.57□□□□□ -0.72
HMGB1P9-201ENST00000429856 SPDYE6P0CI01 402 aa10.57□□□□□ -0.72
HMGB1P9-201ENST00000429856 SPDYE2Q495Y8 402 aa10.57□□□□□ -0.72
HMGB1P9-201ENST00000429856 ZBTB22O15209 634 aa10.56□□□□□ -0.72
HMGB1P9-201ENST00000429856 LHX8Q68G74 356 aa10.48□□□□□ -0.73
HMGB1P9-201ENST00000429856 SPDYE1Q8NFV5 336 aaPredicted RBP10.46□□□□□ -0.73
HMGB1P9-201ENST00000429856 CLEC11AQ9Y240 323 aa10.45□□□□□ -0.74
HMGB1P9-201ENST00000429856 PRKAR2AP13861 404 aaKnown RBP10.42□□□□□ -0.74
HMGB1P9-201ENST00000429856 ZNF692Q9BU19 519 aaPredicted RBP10.42□□□□□ -0.74
HMGB1P9-201ENST00000429856 MKRN4PQ13434 485 aaPredicted RBP10.34□□□□□ -0.75
HMGB1P9-201ENST00000429856 SSUH2Q9Y2M2 353 aa10.34□□□□□ -0.75
HMGB1P9-201ENST00000429856 C19orf67A6NJJ6 358 aa10.31□□□□□ -0.76
HMGB1P9-201ENST00000429856 PRR29P0C7W0 189 aa10.26□□□□□ -0.77
HMGB1P9-201ENST00000429856 GABBR2O75899 941 aa10.24□□□□□ -0.77
HMGB1P9-201ENST00000429856 PABPN1Q86U42 306 aaKnown RBP eCLIP10.22□□□□□ -0.77
HMGB1P9-201ENST00000429856 CHADLQ6NUI6 762 aa10.21□□□□□ -0.77
HMGB1P9-201ENST00000429856 CLCN6P51797 869 aa10.09□□□□□ -0.79
HMGB1P9-201ENST00000429856 CD44P16070 742 aaKnown RBP10.08□□□□□ -0.8
HMGB1P9-201ENST00000429856 FARP1Q9Y4F1 1045 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P9-201ENST00000429856 POTEIP0CG38 1075 aa10.06□□□□□ -0.8
HMGB1P9-201ENST00000429856 DCBLD2Q96PD2 775 aa9.97□□□□□ -0.81
HMGB1P9-201ENST00000429856 STAG3Q9UJ98 1225 aa9.96□□□□□ -0.82
HMGB1P9-201ENST00000429856 POTEMA6NI47 508 aa9.95□□□□□ -0.82
HMGB1P9-201ENST00000429856 ZRANB1Q9UGI0 708 aa9.91□□□□□ -0.82
HMGB1P9-201ENST00000429856 ZNF579Q8NAF0 562 aaKnown RBP9.89□□□□□ -0.83
HMGB1P9-201ENST00000429856 CSRNP3Q8WYN3 585 aa9.89□□□□□ -0.83
HMGB1P9-201ENST00000429856 POTEGQ6S5H5 508 aa9.88□□□□□ -0.83
HMGB1P9-201ENST00000429856 CREBZFQ9NS37 354 aa9.86□□□□□ -0.83
HMGB1P9-201ENST00000429856 PAK3O75914 559 aaPredicted RBP9.84□□□□□ -0.83
HMGB1P9-201ENST00000429856 OTUD5Q96G74 571 aa9.83□□□□□ -0.84
HMGB1P9-201ENST00000429856 SPDYE4A6NLX3 237 aa9.8□□□□□ -0.84
HMGB1P9-201ENST00000429856 NPM1P06748 294 aaKnown RBP eCLIP9.78□□□□□ -0.84
HMGB1P9-201ENST00000429856 GALR2O43603 387 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P9-201ENST00000429856 POTEB2H3BUK9 544 aa9.73□□□□□ -0.85
HMGB1P9-201ENST00000429856 PHF12Q96QT6 1004 aa9.7□□□□□ -0.86
HMGB1P9-201ENST00000429856 EHMT2Q96KQ7 1210 aa9.68□□□□□ -0.86
HMGB1P9-201ENST00000429856 PCDH10Q9P2E7 1040 aa9.66□□□□□ -0.86
HMGB1P9-201ENST00000429856 MNX1P50219 401 aaPredicted RBP9.64□□□□□ -0.87
HMGB1P9-201ENST00000429856 LCE2DQ5TA82 110 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P9-201ENST00000429856 C7P10643 843 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms