RNA–Protein interactions for RNA: ENST00000428894.1

HMGB3P5-201, Transcript of high mobility group box 3 pseudogene 5, humanhuman

BASIC

Gene HMGB3P5, Length 612 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P5-201ENST00000428894 AEBP2Q6ZN18 517 aaPredicted RBP30.51■■■□□ 2.47
HMGB3P5-201ENST00000428894 CHIC1Q5VXU3 224 aa29.47■■■□□ 2.31
HMGB3P5-201ENST00000428894 SENP3Q9H4L4 574 aaPredicted RBP25.94■■□□□ 1.74
HMGB3P5-201ENST00000428894 PHF23Q9BUL5 403 aaPredicted RBP25.89■■□□□ 1.74
HMGB3P5-201ENST00000428894 FOXD1Q16676 465 aa24.14■■□□□ 1.45
HMGB3P5-201ENST00000428894 PLPPR3Q6T4P5 718 aa23.78■■□□□ 1.4
HMGB3P5-201ENST00000428894 PPP6R1Q9UPN7 881 aa22.96■■□□□ 1.27
HMGB3P5-201ENST00000428894 ADRA2BP18089 450 aa22.94■■□□□ 1.26
HMGB3P5-201ENST00000428894 PIAS4Q8N2W9 510 aaPredicted RBP22.68■■□□□ 1.22
HMGB3P5-201ENST00000428894 MSH5O43196 834 aa22.38■■□□□ 1.17
HMGB3P5-201ENST00000428894 POTEDQ86YR6 584 aa20.98■□□□□ 0.95
HMGB3P5-201ENST00000428894 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
HMGB3P5-201ENST00000428894 PPP4R3CPQ6ZMV5 832 aa20.93■□□□□ 0.94
HMGB3P5-201ENST00000428894 MAPK8IP2Q13387 824 aaPredicted RBP20.92■□□□□ 0.94
HMGB3P5-201ENST00000428894 DMRT2Q9Y5R5 561 aa20.65■□□□□ 0.9
HMGB3P5-201ENST00000428894 CNKSR2Q8WXI2 1034 aa20.41■□□□□ 0.86
HMGB3P5-201ENST00000428894 NCBP3Q53F19 620 aaKnown RBP20.28■□□□□ 0.84
HMGB3P5-201ENST00000428894 HOXD11P31277 338 aaPredicted RBP20.09■□□□□ 0.81
HMGB3P5-201ENST00000428894 RNF216Q9NWF9 866 aaPredicted RBP20.09■□□□□ 0.81
HMGB3P5-201ENST00000428894 KCNA4P22459 653 aa20.06■□□□□ 0.8
HMGB3P5-201ENST00000428894 NPM3O75607 178 aaKnown RBP19.98■□□□□ 0.79
HMGB3P5-201ENST00000428894 DCAF8L1A6NGE4 600 aa19.83■□□□□ 0.77
HMGB3P5-201ENST00000428894 DNAJC5BQ9UF47 199 aa19.39■□□□□ 0.69
HMGB3P5-201ENST00000428894 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.18■□□□□ 0.66
HMGB3P5-201ENST00000428894 RNF39Q9H2S5 420 aa19.13■□□□□ 0.65
HMGB3P5-201ENST00000428894 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
HMGB3P5-201ENST00000428894 SLC4A2P04920 1241 aa18.95■□□□□ 0.62
HMGB3P5-201ENST00000428894 CACNB1Q02641 598 aaPredicted RBP18.93■□□□□ 0.62
HMGB3P5-201ENST00000428894 C1QBPQ07021 282 aaKnown RBP18.89■□□□□ 0.61
HMGB3P5-201ENST00000428894 U3KPZ7 1027 aaPredicted RBP18.81■□□□□ 0.6
HMGB3P5-201ENST00000428894 FOXD4L1Q9NU39 408 aa18.55■□□□□ 0.56
HMGB3P5-201ENST00000428894 MYCNP04198 464 aaPredicted RBP18.46■□□□□ 0.55
HMGB3P5-201ENST00000428894 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.45■□□□□ 0.54
HMGB3P5-201ENST00000428894 HNRNPUL2Q1KMD3 747 aaKnown RBP18.45■□□□□ 0.54
HMGB3P5-201ENST00000428894 ZBTB22O15209 634 aa18.43■□□□□ 0.54
HMGB3P5-201ENST00000428894 SPINK5Q9NQ38 1064 aaPredicted RBP18.4■□□□□ 0.54
HMGB3P5-201ENST00000428894 SAMD1Q6SPF0 538 aaPredicted RBP18.37■□□□□ 0.53
HMGB3P5-201ENST00000428894 CAPN15O75808 1086 aa18.36■□□□□ 0.53
HMGB3P5-201ENST00000428894 APLP2Q06481 763 aa18.35■□□□□ 0.53
HMGB3P5-201ENST00000428894 TRHP20396 242 aaPredicted RBP18.2■□□□□ 0.5
HMGB3P5-201ENST00000428894 ZNF219Q9P2Y4 722 aaPredicted RBP18.14■□□□□ 0.49
HMGB3P5-201ENST00000428894 EHMT2Q96KQ7 1210 aa18.12■□□□□ 0.49
HMGB3P5-201ENST00000428894 DSG3P32926 999 aa18.1■□□□□ 0.49
HMGB3P5-201ENST00000428894 CSRNP3Q8WYN3 585 aa18.06■□□□□ 0.48
HMGB3P5-201ENST00000428894 ATF5Q9Y2D1 282 aaPredicted RBP18.01■□□□□ 0.47
HMGB3P5-201ENST00000428894 ABCB7O75027 752 aa17.98■□□□□ 0.47
HMGB3P5-201ENST00000428894 ATXN8OSP0DMR3 200 aa17.92■□□□□ 0.46
HMGB3P5-201ENST00000428894 POLA2Q14181 598 aa17.81■□□□□ 0.44
HMGB3P5-201ENST00000428894 ZBTB12Q9Y330 459 aaPredicted RBP17.46■□□□□ 0.39
HMGB3P5-201ENST00000428894 FBLN2P98095 1184 aa17.28■□□□□ 0.36
HMGB3P5-201ENST00000428894 RBM42Q9BTD8 480 aaKnown RBP17.26■□□□□ 0.35
HMGB3P5-201ENST00000428894 MKRN4PQ13434 485 aaPredicted RBP17.2■□□□□ 0.34
HMGB3P5-201ENST00000428894 OSCARQ8IYS5 282 aa17.19■□□□□ 0.34
HMGB3P5-201ENST00000428894 AKT1S1Q96B36 256 aa16.98■□□□□ 0.31
HMGB3P5-201ENST00000428894 SPDYE2BA6NHP3 402 aa16.97■□□□□ 0.31
HMGB3P5-201ENST00000428894 SPDYE6P0CI01 402 aa16.97■□□□□ 0.31
HMGB3P5-201ENST00000428894 SPDYE2Q495Y8 402 aa16.97■□□□□ 0.31
HMGB3P5-201ENST00000428894 ZNF692Q9BU19 519 aaPredicted RBP16.88■□□□□ 0.29
HMGB3P5-201ENST00000428894 REM2Q8IYK8 340 aaPredicted RBP16.82■□□□□ 0.28
HMGB3P5-201ENST00000428894 SSUH2Q9Y2M2 353 aa16.79■□□□□ 0.28
HMGB3P5-201ENST00000428894 CHRDL2Q6WN34 429 aa16.68■□□□□ 0.26
HMGB3P5-201ENST00000428894 SPDYE4A6NLX3 237 aa16.67■□□□□ 0.26
HMGB3P5-201ENST00000428894 PABPN1Q86U42 306 aaKnown RBP eCLIP16.64■□□□□ 0.25
HMGB3P5-201ENST00000428894 PITPNM1O00562 1244 aa16.63■□□□□ 0.25
HMGB3P5-201ENST00000428894 SPDYE1Q8NFV5 336 aaPredicted RBP16.56■□□□□ 0.24
HMGB3P5-201ENST00000428894 POTEHQ6S545 545 aa16.54■□□□□ 0.24
HMGB3P5-201ENST00000428894 CLEC11AQ9Y240 323 aa16.54■□□□□ 0.24
HMGB3P5-201ENST00000428894 PIP4P2Q8N4L2 257 aa16.4■□□□□ 0.22
HMGB3P5-201ENST00000428894 FXR2P51116 673 aaKnown RBP eCLIP16.38■□□□□ 0.21
HMGB3P5-201ENST00000428894 FKBP8Q14318 412 aa16.37■□□□□ 0.21
HMGB3P5-201ENST00000428894 PRR29P0C7W0 189 aa16.33■□□□□ 0.2
HMGB3P5-201ENST00000428894 PROM2Q8N271 834 aa16.29■□□□□ 0.2
HMGB3P5-201ENST00000428894 STAG3Q9UJ98 1225 aa16.29■□□□□ 0.2
HMGB3P5-201ENST00000428894 PRKAR2AP13861 404 aaKnown RBP16.22■□□□□ 0.19
HMGB3P5-201ENST00000428894 CHADLQ6NUI6 762 aa16.16■□□□□ 0.18
HMGB3P5-201ENST00000428894 CREBZFQ9NS37 354 aa16.02■□□□□ 0.16
HMGB3P5-201ENST00000428894 HAX1O00165 279 aa15.99■□□□□ 0.15
HMGB3P5-201ENST00000428894 FARP1Q9Y4F1 1045 aaPredicted RBP15.96■□□□□ 0.15
HMGB3P5-201ENST00000428894 MIER1Q8N108 512 aa15.86■□□□□ 0.13
HMGB3P5-201ENST00000428894 FBXO3Q9UK99 471 aa15.86■□□□□ 0.13
HMGB3P5-201ENST00000428894 C19orf67A6NJJ6 358 aa15.84■□□□□ 0.13
HMGB3P5-201ENST00000428894 EVX2Q03828 476 aa15.82■□□□□ 0.12
HMGB3P5-201ENST00000428894 MNX1P50219 401 aaPredicted RBP15.8■□□□□ 0.12
HMGB3P5-201ENST00000428894 PLEKHG5O94827 1062 aa15.79■□□□□ 0.12
HMGB3P5-201ENST00000428894 PLCD3Q8N3E9 789 aa15.79■□□□□ 0.12
HMGB3P5-201ENST00000428894 NPM1P06748 294 aaKnown RBP eCLIP15.76■□□□□ 0.11
HMGB3P5-201ENST00000428894 SP7Q8TDD2 431 aaPredicted RBP15.74■□□□□ 0.11
HMGB3P5-201ENST00000428894 CD44P16070 742 aaKnown RBP15.73■□□□□ 0.11
HMGB3P5-201ENST00000428894 VASPP50552 380 aaPredicted RBP15.66■□□□□ 0.1
HMGB3P5-201ENST00000428894 ZBTB47Q9UFB7 747 aaPredicted RBP15.61■□□□□ 0.09
HMGB3P5-201ENST00000428894 ZRANB1Q9UGI0 708 aa15.61■□□□□ 0.09
HMGB3P5-201ENST00000428894 PAK3O75914 559 aaPredicted RBP15.59■□□□□ 0.09
HMGB3P5-201ENST00000428894 KLHL34Q8N239 644 aa15.51■□□□□ 0.07
HMGB3P5-201ENST00000428894 TSPYL2Q9H2G4 693 aaPredicted RBP15.51■□□□□ 0.07
HMGB3P5-201ENST00000428894 GABBR2O75899 941 aa15.49■□□□□ 0.07
HMGB3P5-201ENST00000428894 ZNF579Q8NAF0 562 aaKnown RBP15.49■□□□□ 0.07
HMGB3P5-201ENST00000428894 RASEFQ8IZ41 740 aa15.48■□□□□ 0.07
HMGB3P5-201ENST00000428894 NUBP1P53384 320 aa15.46■□□□□ 0.07
HMGB3P5-201ENST00000428894 PHF12Q96QT6 1004 aa15.43■□□□□ 0.06
HMGB3P5-201ENST00000428894 IFNLR1Q8IU57 520 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms