RNA–Protein interactions for RNA: ENST00000428878.6

HIPK2-203, Transcript of homeodomain interacting protein kinase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIPK2, Length 3,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK2-203ENST00000428878 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
HIPK2-203ENST00000428878 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
HIPK2-203ENST00000428878 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
HIPK2-203ENST00000428878 CCDC180Q9P1Z9 1646 aa19.94■□□□□ 0.78
HIPK2-203ENST00000428878 SUPT5HO00267 1087 aaKnown RBP19.76■□□□□ 0.75
HIPK2-203ENST00000428878 ABCC9O60706 1549 aa19.22■□□□□ 0.67
HIPK2-203ENST00000428878 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
HIPK2-203ENST00000428878 UNC13AQ9UPW8 1703 aa18.96■□□□□ 0.63
HIPK2-203ENST00000428878 EHMT2Q96KQ7 1210 aa18.92■□□□□ 0.62
HIPK2-203ENST00000428878 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
HIPK2-203ENST00000428878 DCAF1Q9Y4B6 1507 aa18.73■□□□□ 0.59
HIPK2-203ENST00000428878 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
HIPK2-203ENST00000428878 FAM9AQ8IZU1 332 aaPredicted RBP18.54■□□□□ 0.56
HIPK2-203ENST00000428878 BICRAQ9NZM4 1560 aa18.51■□□□□ 0.55
HIPK2-203ENST00000428878 NACADO15069 1562 aa18.4■□□□□ 0.54
HIPK2-203ENST00000428878 RB1CC1Q8TDY2 1594 aa18.37■□□□□ 0.53
HIPK2-203ENST00000428878 SCRIBQ14160 1630 aa18.36■□□□□ 0.53
HIPK2-203ENST00000428878 TRIM41Q8WV44 630 aa18.13■□□□□ 0.49
HIPK2-203ENST00000428878 RANGAP1P46060 587 aaPredicted RBP18.09■□□□□ 0.49
HIPK2-203ENST00000428878 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.49
HIPK2-203ENST00000428878 TTBK1Q5TCY1 1321 aaPredicted RBP18.05■□□□□ 0.48
HIPK2-203ENST00000428878 LOC105371045A0A1W2PR82 267 aa18.04■□□□□ 0.48
HIPK2-203ENST00000428878 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
HIPK2-203ENST00000428878 PPARGC1BQ86YN6 1023 aaKnown RBP17.86■□□□□ 0.45
HIPK2-203ENST00000428878 CECR2Q9BXF3 1484 aa17.83■□□□□ 0.45
HIPK2-203ENST00000428878 RSF1Q96T23 1441 aaPredicted RBP17.7■□□□□ 0.42
HIPK2-203ENST00000428878 UBTFP17480 764 aaKnown RBP17.66■□□□□ 0.42
HIPK2-203ENST00000428878 PCGF6Q9BYE7 350 aa17.66■□□□□ 0.42
HIPK2-203ENST00000428878 CC2D2AQ9P2K1 1620 aa17.62■□□□□ 0.41
HIPK2-203ENST00000428878 EIF4G1Q04637 1599 aaKnown RBP17.58■□□□□ 0.4
HIPK2-203ENST00000428878 MROH2BQ7Z745 1585 aa17.51■□□□□ 0.39
HIPK2-203ENST00000428878 ATP1B4Q9UN42 357 aaPredicted RBP17.46■□□□□ 0.39
HIPK2-203ENST00000428878 BAZ1AQ9NRL2 1556 aaPredicted RBP17.33■□□□□ 0.37
HIPK2-203ENST00000428878 WIZO95785 1651 aa17.31■□□□□ 0.36
HIPK2-203ENST00000428878 SMARCA4P51532 1647 aa17.27■□□□□ 0.36
HIPK2-203ENST00000428878 APLP2Q06481 763 aa17.27■□□□□ 0.36
HIPK2-203ENST00000428878 PEG3Q9GZU2 1588 aa17.26■□□□□ 0.35
HIPK2-203ENST00000428878 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
HIPK2-203ENST00000428878 P3H3Q8IVL6 736 aa17.12■□□□□ 0.33
HIPK2-203ENST00000428878 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
HIPK2-203ENST00000428878 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
HIPK2-203ENST00000428878 TOP2AP11388 1531 aaKnown RBP17.09■□□□□ 0.33
HIPK2-203ENST00000428878 FBLN2P98095 1184 aa17.08■□□□□ 0.33
HIPK2-203ENST00000428878 ITGAEP38570 1179 aa17.07■□□□□ 0.32
HIPK2-203ENST00000428878 ABCC8Q09428 1581 aa17.07■□□□□ 0.32
HIPK2-203ENST00000428878 ARID3CA6NKF2 412 aa17.04■□□□□ 0.32
HIPK2-203ENST00000428878 HMGXB3Q12766 1538 aa17.02■□□□□ 0.31
HIPK2-203ENST00000428878 THOC2Q8NI27 1593 aaKnown RBP17.01■□□□□ 0.31
HIPK2-203ENST00000428878 ATAD2BQ9ULI0 1458 aa16.98■□□□□ 0.31
HIPK2-203ENST00000428878 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
HIPK2-203ENST00000428878 SOGA1O94964 1423 aa16.94■□□□□ 0.3
HIPK2-203ENST00000428878 SMARCA2P51531 1590 aa16.93■□□□□ 0.3
HIPK2-203ENST00000428878 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.93■□□□□ 0.3
HIPK2-203ENST00000428878 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
HIPK2-203ENST00000428878 TRIM26Q12899 539 aaPredicted RBP16.91■□□□□ 0.3
HIPK2-203ENST00000428878 WRNQ14191 1432 aaPredicted RBP eCLIP16.91■□□□□ 0.35e-6■■■■■ 46
HIPK2-203ENST00000428878 CCER1Q8TC90 406 aaPredicted RBP16.89■□□□□ 0.29
HIPK2-203ENST00000428878 PRDM2Q13029 1718 aa16.8■□□□□ 0.28
HIPK2-203ENST00000428878 RUSC2Q8N2Y8 1516 aa16.8■□□□□ 0.28
HIPK2-203ENST00000428878 KIF21AQ7Z4S6 1674 aa16.78■□□□□ 0.28
HIPK2-203ENST00000428878 CUX2O14529 1486 aa16.72■□□□□ 0.27
HIPK2-203ENST00000428878 NESP48681 1621 aa16.67■□□□□ 0.26
HIPK2-203ENST00000428878 FAM50AQ14320 339 aaKnown RBP16.65■□□□□ 0.26
HIPK2-203ENST00000428878 TDRD9Q8NDG6 1382 aaKnown RBP16.65■□□□□ 0.26
HIPK2-203ENST00000428878 CADPSQ9ULU8 1353 aa16.64■□□□□ 0.25
HIPK2-203ENST00000428878 LAMC3Q9Y6N6 1575 aa16.62■□□□□ 0.25
HIPK2-203ENST00000428878 HRCP23327 699 aa16.59■□□□□ 0.25
HIPK2-203ENST00000428878 ERCC6Q03468 1493 aa16.58■□□□□ 0.25
HIPK2-203ENST00000428878 CEP162Q5TB80 1403 aa16.57■□□□□ 0.24
HIPK2-203ENST00000428878 CHMP7Q8WUX9 453 aaPredicted RBP16.53■□□□□ 0.24
HIPK2-203ENST00000428878 WDR62O43379 1518 aa16.52■□□□□ 0.24
HIPK2-203ENST00000428878 CLIP1P30622 1438 aa16.52■□□□□ 0.24
HIPK2-203ENST00000428878 KIF27Q86VH2 1401 aa16.5■□□□□ 0.23
HIPK2-203ENST00000428878 FANCD2Q9BXW9 1451 aa16.47■□□□□ 0.23
HIPK2-203ENST00000428878 RAD54L2Q9Y4B4 1467 aa16.46■□□□□ 0.23
HIPK2-203ENST00000428878 GOLGA3Q08378 1498 aa16.45■□□□□ 0.22
HIPK2-203ENST00000428878 MYT1LQ9UL68 1186 aa16.44■□□□□ 0.22
HIPK2-203ENST00000428878 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
HIPK2-203ENST00000428878 CARMIL1Q5VZK9 1371 aa16.42■□□□□ 0.22
HIPK2-203ENST00000428878 ZNF777Q9ULD5 760 aaPredicted RBP16.42■□□□□ 0.22
HIPK2-203ENST00000428878 CFTRP13569 1480 aa16.41■□□□□ 0.22
HIPK2-203ENST00000428878 SYNJ1O43426 1573 aa16.4■□□□□ 0.22
HIPK2-203ENST00000428878 BIVM-ERCC5R4GMW8 1640 aa16.4■□□□□ 0.22
HIPK2-203ENST00000428878 PDS5BQ9NTI5 1447 aa16.39■□□□□ 0.21
HIPK2-203ENST00000428878 TNIKQ9UKE5 1360 aa16.39■□□□□ 0.21
HIPK2-203ENST00000428878 CEP164Q9UPV0 1460 aa16.36■□□□□ 0.21
HIPK2-203ENST00000428878 KANK4Q5T7N3 995 aaPredicted RBP16.36■□□□□ 0.21
HIPK2-203ENST00000428878 TOP2BQ02880 1626 aa16.35■□□□□ 0.21
HIPK2-203ENST00000428878 NEUROD1Q13562 356 aa16.35■□□□□ 0.21
HIPK2-203ENST00000428878 CHIC2Q9UKJ5 165 aa16.35■□□□□ 0.21
HIPK2-203ENST00000428878 DNAJC5Q9H3Z4 198 aa16.34■□□□□ 0.21
HIPK2-203ENST00000428878 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.21
HIPK2-203ENST00000428878 EEA1Q15075 1411 aa16.33■□□□□ 0.21
HIPK2-203ENST00000428878 CNGB1Q14028 1251 aaPredicted RBP16.29■□□□□ 0.2
HIPK2-203ENST00000428878 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.22e-6■■■■■ 44.2
HIPK2-203ENST00000428878 TRIM52Q96A61 297 aa16.28■□□□□ 0.2
HIPK2-203ENST00000428878 CUX1P39880 1505 aa16.26■□□□□ 0.19
HIPK2-203ENST00000428878 ZEB1P37275 1124 aaPredicted RBP16.25■□□□□ 0.19
HIPK2-203ENST00000428878 IGF1RP08069 1367 aa16.25■□□□□ 0.19
HIPK2-203ENST00000428878 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms