RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 AEBP2Q6ZN18 517 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-205ENST00000426576 CHIC1Q5VXU3 224 aa6.34□□□□□ -1.39
CCDC88A-205ENST00000426576 PHF23Q9BUL5 403 aaPredicted RBP5.85□□□□□ -1.47
CCDC88A-205ENST00000426576 DCAF8L2P0C7V8 631 aa5.66□□□□□ -1.5
CCDC88A-205ENST00000426576 TRIM41Q8WV44 630 aa5.49□□□□□ -1.53
CCDC88A-205ENST00000426576 SENP3Q9H4L4 574 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-205ENST00000426576 TRHP20396 242 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-205ENST00000426576 DNAJC5BQ9UF47 199 aa5.32□□□□□ -1.56
CCDC88A-205ENST00000426576 FOXD1Q16676 465 aa5.31□□□□□ -1.56
CCDC88A-205ENST00000426576 FAM9AQ8IZU1 332 aaPredicted RBP5.24□□□□□ -1.57
CCDC88A-205ENST00000426576 DCAF8L1A6NGE4 600 aa5.22□□□□□ -1.57
CCDC88A-205ENST00000426576 EHMT2Q96KQ7 1210 aa5.17□□□□□ -1.58
CCDC88A-205ENST00000426576 PPP6R1Q9UPN7 881 aa5.14□□□□□ -1.59
CCDC88A-205ENST00000426576 SCAF1Q9H7N4 1312 aaKnown RBP5.08□□□□□ -1.6
CCDC88A-205ENST00000426576 MYT1LQ9UL68 1186 aa5.04□□□□□ -1.6
CCDC88A-205ENST00000426576 PLPPR3Q6T4P5 718 aa5.04□□□□□ -1.6
CCDC88A-205ENST00000426576 PABPN1Q86U42 306 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC88A-205ENST00000426576 NPM1P06748 294 aaKnown RBP eCLIP4.96□□□□□ -1.62
CCDC88A-205ENST00000426576 FBLN2P98095 1184 aa4.93□□□□□ -1.62
CCDC88A-205ENST00000426576 ESF1Q9H501 851 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-205ENST00000426576 DNAJC5Q9H3Z4 198 aa4.9□□□□□ -1.62
CCDC88A-205ENST00000426576 ADRA2BP18089 450 aa4.89□□□□□ -1.63
CCDC88A-205ENST00000426576 DISP3Q9P2K9 1392 aa4.86□□□□□ -1.63
CCDC88A-205ENST00000426576 TTBK1Q5TCY1 1321 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-205ENST00000426576 ABCC9O60706 1549 aa4.82□□□□□ -1.64
CCDC88A-205ENST00000426576 ARID4BQ4LE39 1312 aaPredicted RBP4.78□□□□□ -1.64
CCDC88A-205ENST00000426576 CHMP7Q8WUX9 453 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-205ENST00000426576 A0A0G2JS52 829 aa4.76□□□□□ -1.65
CCDC88A-205ENST00000426576 MYT1Q01538 1121 aa4.76□□□□□ -1.65
CCDC88A-205ENST00000426576 CFAP44Q96MT7 982 aa4.75□□□□□ -1.65
CCDC88A-205ENST00000426576 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.75□□□□□ -1.651e-6■■■□□ 17.7
CCDC88A-205ENST00000426576 BCANQ96GW7 911 aa4.73□□□□□ -1.65
CCDC88A-205ENST00000426576 CYB5RLQ6IPT4 315 aa4.72□□□□□ -1.65
CCDC88A-205ENST00000426576 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-205ENST00000426576 HNRNPUL2Q1KMD3 747 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-205ENST00000426576 SF3B2Q13435 895 aaKnown RBP4.71□□□□□ -1.65
CCDC88A-205ENST00000426576 POTEDQ86YR6 584 aa4.71□□□□□ -1.66
CCDC88A-205ENST00000426576 NISCHQ9Y2I1 1504 aa4.71□□□□□ -1.66
CCDC88A-205ENST00000426576 ERCC6Q03468 1493 aa4.7□□□□□ -1.66
CCDC88A-205ENST00000426576 ILDR1Q86SU0 546 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-205ENST00000426576 MEX3CQ5U5Q3 659 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-205ENST00000426576 PPP1R1BQ9UD71 204 aaPredicted RBP4.67□□□□□ -1.66
CCDC88A-205ENST00000426576 LMTK3Q96Q04 1460 aa4.65□□□□□ -1.66
CCDC88A-205ENST00000426576 OSCARQ8IYS5 282 aa4.65□□□□□ -1.67
CCDC88A-205ENST00000426576 CAPN15O75808 1086 aa4.64□□□□□ -1.67
CCDC88A-205ENST00000426576 C14orf37Q86TY3 774 aa4.64□□□□□ -1.67
CCDC88A-205ENST00000426576 HAP1P54257 671 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-205ENST00000426576 PIAS4Q8N2W9 510 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-205ENST00000426576 MSH5O43196 834 aa4.62□□□□□ -1.67
CCDC88A-205ENST00000426576 KLHL34Q8N239 644 aa4.59□□□□□ -1.67
CCDC88A-205ENST00000426576 CACNA1GO43497 2377 aa4.58□□□□□ -1.68
CCDC88A-205ENST00000426576 SOCS7O14512 581 aa4.57□□□□□ -1.68
CCDC88A-205ENST00000426576 SENP3-EIF4A1A0A087X0R7 540 aa4.57□□□□□ -1.68
CCDC88A-205ENST00000426576 ATP1B4Q9UN42 357 aaPredicted RBP4.57□□□□□ -1.68
CCDC88A-205ENST00000426576 PELP1Q8IZL8 1130 aaKnown RBP4.57□□□□□ -1.68
CCDC88A-205ENST00000426576 MAPK8IP2Q13387 824 aaPredicted RBP4.56□□□□□ -1.68
CCDC88A-205ENST00000426576 NUTM2BA6NNL0 878 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-205ENST00000426576 NUTM2EB1AL46 878 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-205ENST00000426576 NUTM2DQ5VT03 806 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-205ENST00000426576 NUTM2AQ8IVF1 878 aaPredicted RBP4.55□□□□□ -1.68
CCDC88A-205ENST00000426576 PIP4K2BP78356 416 aa4.55□□□□□ -1.68
CCDC88A-205ENST00000426576 STAG3Q9UJ98 1225 aa4.53□□□□□ -1.68
CCDC88A-205ENST00000426576 FBXO41Q8TF61 875 aa4.53□□□□□ -1.68
CCDC88A-205ENST00000426576 CCDC9Q9Y3X0 531 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-205ENST00000426576 ZRANB1Q9UGI0 708 aa4.51□□□□□ -1.69
CCDC88A-205ENST00000426576 UBAP1LF5GYI3 381 aa4.51□□□□□ -1.69
CCDC88A-205ENST00000426576 DMRT2Q9Y5R5 561 aa4.51□□□□□ -1.69
CCDC88A-205ENST00000426576 RBM33Q96EV2 1170 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-205ENST00000426576 C16orf71Q8IYS4 520 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-205ENST00000426576 SHROOM4Q9ULL8 1493 aa4.47□□□□□ -1.69
CCDC88A-205ENST00000426576 MLECQ14165 292 aa4.46□□□□□ -1.69
CCDC88A-205ENST00000426576 BEGAINQ9BUH8 593 aa4.45□□□□□ -1.7
CCDC88A-205ENST00000426576 MAP3K9P80192 1104 aa4.45□□□□□ -1.7
CCDC88A-205ENST00000426576 RANGAP1P46060 587 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-205ENST00000426576 PLEKHG5O94827 1062 aa4.44□□□□□ -1.7
CCDC88A-205ENST00000426576 HOXD11P31277 338 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-205ENST00000426576 IL27Q8NEV9 243 aa4.43□□□□□ -1.7
CCDC88A-205ENST00000426576 TOM1O60784 492 aa4.42□□□□□ -1.7
CCDC88A-205ENST00000426576 ARID3CA6NKF2 412 aa4.42□□□□□ -1.7
CCDC88A-205ENST00000426576 PAXIP1Q6ZW49 1069 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-205ENST00000426576 YY1P25490 414 aa4.4□□□□□ -1.7
CCDC88A-205ENST00000426576 TRIM52Q96A61 297 aa4.4□□□□□ -1.71
CCDC88A-205ENST00000426576 NPM2Q86SE8 214 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-205ENST00000426576 FAM69CQ0P6D2 419 aa4.39□□□□□ -1.71
CCDC88A-205ENST00000426576 AIDAQ96BJ3 306 aa4.38□□□□□ -1.71
CCDC88A-205ENST00000426576 SLC4A1APQ9BWU0 796 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-205ENST00000426576 NEUROD2Q15784 382 aa4.38□□□□□ -1.71
CCDC88A-205ENST00000426576 NPHP1O15259 732 aa4.36□□□□□ -1.71
CCDC88A-205ENST00000426576 LMOD2Q6P5Q4 547 aa4.36□□□□□ -1.71
CCDC88A-205ENST00000426576 PPP1R15AO75807 674 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-205ENST00000426576 KCNH8Q96L42 1107 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 GPR162Q16538 588 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 TNS4Q8IZW8 715 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 CECR2Q9BXF3 1484 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 NBPF8Q3BBV2 869 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 NBPF14Q5TI25 921 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 NGLY1Q96IV0 654 aa4.32□□□□□ -1.72
CCDC88A-205ENST00000426576 KRI1Q8N9T8 703 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-205ENST00000426576 PPP4R3CPQ6ZMV5 832 aa4.31□□□□□ -1.72
CCDC88A-205ENST00000426576 CERKQ8TCT0 537 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms