RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 AEBP2Q6ZN18 517 aaPredicted RBP35.33■■■■□ 3.25
LINC01040-201ENST00000425048 CHIC1Q5VXU3 224 aa33.76■■■□□ 2.99
LINC01040-201ENST00000425048 SENP3Q9H4L4 574 aaPredicted RBP30.17■■■□□ 2.42
LINC01040-201ENST00000425048 PHF23Q9BUL5 403 aaPredicted RBP29.82■■■□□ 2.36
LINC01040-201ENST00000425048 FOXD1Q16676 465 aa28.07■■■□□ 2.08
LINC01040-201ENST00000425048 PLPPR3Q6T4P5 718 aa27.08■■□□□ 1.93
LINC01040-201ENST00000425048 PPP6R1Q9UPN7 881 aa26.37■■□□□ 1.81
LINC01040-201ENST00000425048 ADRA2BP18089 450 aa26.31■■□□□ 1.8
LINC01040-201ENST00000425048 PIAS4Q8N2W9 510 aaPredicted RBP26.28■■□□□ 1.8
LINC01040-201ENST00000425048 MSH5O43196 834 aa26.25■■□□□ 1.79
LINC01040-201ENST00000425048 POTEDQ86YR6 584 aa25.29■■□□□ 1.64
LINC01040-201ENST00000425048 SCAF1Q9H7N4 1312 aaKnown RBP24.16■■□□□ 1.46
LINC01040-201ENST00000425048 MAPK8IP2Q13387 824 aaPredicted RBP24.12■■□□□ 1.45
LINC01040-201ENST00000425048 DMRT2Q9Y5R5 561 aa23.94■■□□□ 1.42
LINC01040-201ENST00000425048 PPP4R3CPQ6ZMV5 832 aa23.75■■□□□ 1.39
LINC01040-201ENST00000425048 CNKSR2Q8WXI2 1034 aa23.28■■□□□ 1.32
LINC01040-201ENST00000425048 HOXD11P31277 338 aaPredicted RBP23.12■■□□□ 1.29
LINC01040-201ENST00000425048 RNF216Q9NWF9 866 aaPredicted RBP23.02■■□□□ 1.28
LINC01040-201ENST00000425048 DCAF8L1A6NGE4 600 aa22.98■■□□□ 1.27
LINC01040-201ENST00000425048 NCBP3Q53F19 620 aaKnown RBP22.94■■□□□ 1.26
LINC01040-201ENST00000425048 NPM3O75607 178 aaKnown RBP22.53■■□□□ 1.2
LINC01040-201ENST00000425048 CACNB1Q02641 598 aaPredicted RBP22.43■■□□□ 1.18
LINC01040-201ENST00000425048 RNF39Q9H2S5 420 aa22.38■■□□□ 1.17
LINC01040-201ENST00000425048 DNAJC5BQ9UF47 199 aa22.33■■□□□ 1.17
LINC01040-201ENST00000425048 KCNA4P22459 653 aa22.24■■□□□ 1.15
LINC01040-201ENST00000425048 C1QBPQ07021 282 aaKnown RBP22.11■■□□□ 1.13
LINC01040-201ENST00000425048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.08■■□□□ 1.13
LINC01040-201ENST00000425048 U3KPZ7 1027 aaPredicted RBP21.56■■□□□ 1.04
LINC01040-201ENST00000425048 SLC4A2P04920 1241 aa21.46■■□□□ 1.03
LINC01040-201ENST00000425048 CAPN15O75808 1086 aa21.21■□□□□ 0.99
LINC01040-201ENST00000425048 SPINK5Q9NQ38 1064 aaPredicted RBP21.21■□□□□ 0.99
LINC01040-201ENST00000425048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.11■□□□□ 0.97
LINC01040-201ENST00000425048 HNRNPUL2Q1KMD3 747 aaKnown RBP21.11■□□□□ 0.97
LINC01040-201ENST00000425048 APLP2Q06481 763 aa21.09■□□□□ 0.97
LINC01040-201ENST00000425048 SLC4A1APQ9BWU0 796 aaKnown RBP21.06■□□□□ 0.96
LINC01040-201ENST00000425048 DSG3P32926 999 aa21.03■□□□□ 0.96
LINC01040-201ENST00000425048 SAMD1Q6SPF0 538 aaPredicted RBP20.97■□□□□ 0.95
LINC01040-201ENST00000425048 TRHP20396 242 aaPredicted RBP20.91■□□□□ 0.94
LINC01040-201ENST00000425048 ZNF219Q9P2Y4 722 aaPredicted RBP20.89■□□□□ 0.93
LINC01040-201ENST00000425048 MYCNP04198 464 aaPredicted RBP20.86■□□□□ 0.93
LINC01040-201ENST00000425048 FOXD4L1Q9NU39 408 aa20.73■□□□□ 0.91
LINC01040-201ENST00000425048 ABCB7O75027 752 aa20.69■□□□□ 0.9
LINC01040-201ENST00000425048 ZBTB22O15209 634 aa20.41■□□□□ 0.86
LINC01040-201ENST00000425048 POLA2Q14181 598 aa20.39■□□□□ 0.85
LINC01040-201ENST00000425048 ATF5Q9Y2D1 282 aaPredicted RBP20.32■□□□□ 0.84
LINC01040-201ENST00000425048 ATXN8OSP0DMR3 200 aa20.12■□□□□ 0.81
LINC01040-201ENST00000425048 RBM42Q9BTD8 480 aaKnown RBP20.1■□□□□ 0.81
LINC01040-201ENST00000425048 ZBTB12Q9Y330 459 aaPredicted RBP20.01■□□□□ 0.79
LINC01040-201ENST00000425048 POTEHQ6S545 545 aa19.88■□□□□ 0.77
LINC01040-201ENST00000425048 OSCARQ8IYS5 282 aa19.68■□□□□ 0.74
LINC01040-201ENST00000425048 CSRNP3Q8WYN3 585 aa19.67■□□□□ 0.74
LINC01040-201ENST00000425048 AKT1S1Q96B36 256 aa19.67■□□□□ 0.74
LINC01040-201ENST00000425048 FBLN2P98095 1184 aa19.6■□□□□ 0.73
LINC01040-201ENST00000425048 CHRDL2Q6WN34 429 aa19.56■□□□□ 0.72
LINC01040-201ENST00000425048 EHMT2Q96KQ7 1210 aa19.5■□□□□ 0.71
LINC01040-201ENST00000425048 REM2Q8IYK8 340 aaPredicted RBP19.46■□□□□ 0.71
LINC01040-201ENST00000425048 SPDYE2BA6NHP3 402 aa19.39■□□□□ 0.69
LINC01040-201ENST00000425048 SPDYE6P0CI01 402 aa19.39■□□□□ 0.69
LINC01040-201ENST00000425048 MKRN4PQ13434 485 aaPredicted RBP19.39■□□□□ 0.69
LINC01040-201ENST00000425048 SPDYE2Q495Y8 402 aa19.39■□□□□ 0.69
LINC01040-201ENST00000425048 PITPNM1O00562 1244 aa19.22■□□□□ 0.67
LINC01040-201ENST00000425048 ZNF692Q9BU19 519 aaPredicted RBP19.21■□□□□ 0.67
LINC01040-201ENST00000425048 PIP4P2Q8N4L2 257 aa19.12■□□□□ 0.65
LINC01040-201ENST00000425048 SSUH2Q9Y2M2 353 aa19.11■□□□□ 0.65
LINC01040-201ENST00000425048 FXR2P51116 673 aaKnown RBP eCLIP19.05■□□□□ 0.64
LINC01040-201ENST00000425048 SPDYE1Q8NFV5 336 aaPredicted RBP19.03■□□□□ 0.64
LINC01040-201ENST00000425048 CLEC11AQ9Y240 323 aa18.98■□□□□ 0.63
LINC01040-201ENST00000425048 PABPN1Q86U42 306 aaKnown RBP eCLIP18.9■□□□□ 0.62
LINC01040-201ENST00000425048 HAX1O00165 279 aa18.78■□□□□ 0.6
LINC01040-201ENST00000425048 PRKAR2AP13861 404 aaKnown RBP18.76■□□□□ 0.59
LINC01040-201ENST00000425048 PRR29P0C7W0 189 aa18.71■□□□□ 0.59
LINC01040-201ENST00000425048 SP7Q8TDD2 431 aaPredicted RBP18.71■□□□□ 0.59
LINC01040-201ENST00000425048 SPDYE4A6NLX3 237 aa18.62■□□□□ 0.57
LINC01040-201ENST00000425048 CHADLQ6NUI6 762 aa18.56■□□□□ 0.56
LINC01040-201ENST00000425048 EVX2Q03828 476 aa18.49■□□□□ 0.55
LINC01040-201ENST00000425048 STAG3Q9UJ98 1225 aa18.48■□□□□ 0.55
LINC01040-201ENST00000425048 C19orf67A6NJJ6 358 aa18.42■□□□□ 0.54
LINC01040-201ENST00000425048 FARP1Q9Y4F1 1045 aaPredicted RBP18.33■□□□□ 0.52
LINC01040-201ENST00000425048 CREBZFQ9NS37 354 aa18.23■□□□□ 0.51
LINC01040-201ENST00000425048 CD44P16070 742 aaKnown RBP18.17■□□□□ 0.5
LINC01040-201ENST00000425048 PROM2Q8N271 834 aa18.15■□□□□ 0.5
LINC01040-201ENST00000425048 GABBR2O75899 941 aa18.12■□□□□ 0.49
LINC01040-201ENST00000425048 CLCN6P51797 869 aa17.98■□□□□ 0.47
LINC01040-201ENST00000425048 NPM1P06748 294 aaKnown RBP eCLIP17.97■□□□□ 0.47
LINC01040-201ENST00000425048 ZRANB1Q9UGI0 708 aa17.96■□□□□ 0.47
LINC01040-201ENST00000425048 MNX1P50219 401 aaPredicted RBP17.92■□□□□ 0.46
LINC01040-201ENST00000425048 ZNF579Q8NAF0 562 aaKnown RBP17.89■□□□□ 0.45
LINC01040-201ENST00000425048 PAK3O75914 559 aaPredicted RBP17.88■□□□□ 0.45
LINC01040-201ENST00000425048 FKBP8Q14318 412 aa17.85■□□□□ 0.45
LINC01040-201ENST00000425048 PLEKHG5O94827 1062 aa17.79■□□□□ 0.44
LINC01040-201ENST00000425048 MIER1Q8N108 512 aa17.79■□□□□ 0.44
LINC01040-201ENST00000425048 DCBLD2Q96PD2 775 aa17.71■□□□□ 0.43
LINC01040-201ENST00000425048 POTEIP0CG38 1075 aa17.7■□□□□ 0.42
LINC01040-201ENST00000425048 PHF12Q96QT6 1004 aa17.67■□□□□ 0.42
LINC01040-201ENST00000425048 PLCD3Q8N3E9 789 aa17.65■□□□□ 0.42
LINC01040-201ENST00000425048 GALR2O43603 387 aaPredicted RBP17.64■□□□□ 0.41
LINC01040-201ENST00000425048 TSPYL2Q9H2G4 693 aaPredicted RBP17.62■□□□□ 0.41
LINC01040-201ENST00000425048 LHX8Q68G74 356 aa17.57■□□□□ 0.4
LINC01040-201ENST00000425048 ZBTB47Q9UFB7 747 aaPredicted RBP17.53■□□□□ 0.4
LINC01040-201ENST00000425048 FBXO3Q9UK99 471 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms