RNA–Protein interactions for RNA: ENST00000421887.2

SFXN1-202, Transcript of sideroflexin 1, humanhuman

TSL 4

Gene SFXN1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-202ENST00000421887 AEBP2Q6ZN18 517 aaPredicted RBP32.21■■■□□ 2.75
SFXN1-202ENST00000421887 CHIC1Q5VXU3 224 aa30.25■■■□□ 2.43
SFXN1-202ENST00000421887 SENP3Q9H4L4 574 aaPredicted RBP27.54■■■□□ 2
SFXN1-202ENST00000421887 PHF23Q9BUL5 403 aaPredicted RBP27.17■■□□□ 1.94
SFXN1-202ENST00000421887 FOXD1Q16676 465 aa25.73■■□□□ 1.71
SFXN1-202ENST00000421887 POTEDQ86YR6 584 aa24.22■■□□□ 1.47
SFXN1-202ENST00000421887 MSH5O43196 834 aa24.19■■□□□ 1.46
SFXN1-202ENST00000421887 PLPPR3Q6T4P5 718 aa24.04■■□□□ 1.44
SFXN1-202ENST00000421887 PIAS4Q8N2W9 510 aaPredicted RBP24■■□□□ 1.43
SFXN1-202ENST00000421887 PPP6R1Q9UPN7 881 aa23.8■■□□□ 1.4
SFXN1-202ENST00000421887 ADRA2BP18089 450 aa23.74■■□□□ 1.39
SFXN1-202ENST00000421887 MAPK8IP2Q13387 824 aaPredicted RBP21.91■■□□□ 1.1
SFXN1-202ENST00000421887 DMRT2Q9Y5R5 561 aa21.77■■□□□ 1.08
SFXN1-202ENST00000421887 SCAF1Q9H7N4 1312 aaKnown RBP21.7■■□□□ 1.06
SFXN1-202ENST00000421887 DCAF8L1A6NGE4 600 aa21.07■□□□□ 0.96
SFXN1-202ENST00000421887 CACNB1Q02641 598 aaPredicted RBP21.05■□□□□ 0.96
SFXN1-202ENST00000421887 PPP4R3CPQ6ZMV5 832 aa21.04■□□□□ 0.96
SFXN1-202ENST00000421887 HOXD11P31277 338 aaPredicted RBP20.81■□□□□ 0.92
SFXN1-202ENST00000421887 CNKSR2Q8WXI2 1034 aa20.71■□□□□ 0.91
SFXN1-202ENST00000421887 RNF39Q9H2S5 420 aa20.59■□□□□ 0.89
SFXN1-202ENST00000421887 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.89
SFXN1-202ENST00000421887 C1QBPQ07021 282 aaKnown RBP20.28■□□□□ 0.84
SFXN1-202ENST00000421887 NCBP3Q53F19 620 aaKnown RBP20.13■□□□□ 0.81
SFXN1-202ENST00000421887 DNAJC5BQ9UF47 199 aa20.08■□□□□ 0.81
SFXN1-202ENST00000421887 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.95■□□□□ 0.78
SFXN1-202ENST00000421887 NPM3O75607 178 aaKnown RBP19.83■□□□□ 0.77
SFXN1-202ENST00000421887 U3KPZ7 1027 aaPredicted RBP19.42■□□□□ 0.7
SFXN1-202ENST00000421887 CAPN15O75808 1086 aa19.32■□□□□ 0.68
SFXN1-202ENST00000421887 SPINK5Q9NQ38 1064 aaPredicted RBP19.28■□□□□ 0.68
SFXN1-202ENST00000421887 DSG3P32926 999 aa19.19■□□□□ 0.66
SFXN1-202ENST00000421887 KCNA4P22459 653 aa19.17■□□□□ 0.66
SFXN1-202ENST00000421887 SLC4A2P04920 1241 aa19.01■□□□□ 0.63
SFXN1-202ENST00000421887 TRHP20396 242 aaPredicted RBP18.93■□□□□ 0.62
SFXN1-202ENST00000421887 POTEHQ6S545 545 aa18.93■□□□□ 0.62
SFXN1-202ENST00000421887 APLP2Q06481 763 aa18.85■□□□□ 0.61
SFXN1-202ENST00000421887 ABCB7O75027 752 aa18.84■□□□□ 0.61
SFXN1-202ENST00000421887 ZNF219Q9P2Y4 722 aaPredicted RBP18.8■□□□□ 0.6
SFXN1-202ENST00000421887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.75■□□□□ 0.59
SFXN1-202ENST00000421887 HNRNPUL2Q1KMD3 747 aaKnown RBP18.75■□□□□ 0.59
SFXN1-202ENST00000421887 SAMD1Q6SPF0 538 aaPredicted RBP18.63■□□□□ 0.57
SFXN1-202ENST00000421887 MYCNP04198 464 aaPredicted RBP18.34■□□□□ 0.53
SFXN1-202ENST00000421887 RBM42Q9BTD8 480 aaKnown RBP18.33■□□□□ 0.52
SFXN1-202ENST00000421887 POLA2Q14181 598 aa18.31■□□□□ 0.52
SFXN1-202ENST00000421887 CHRDL2Q6WN34 429 aa18.08■□□□□ 0.48
SFXN1-202ENST00000421887 SLC4A1APQ9BWU0 796 aaKnown RBP18.04■□□□□ 0.48
SFXN1-202ENST00000421887 FOXD4L1Q9NU39 408 aa17.97■□□□□ 0.47
SFXN1-202ENST00000421887 ATF5Q9Y2D1 282 aaPredicted RBP17.97■□□□□ 0.47
SFXN1-202ENST00000421887 ZBTB12Q9Y330 459 aaPredicted RBP17.85■□□□□ 0.45
SFXN1-202ENST00000421887 AKT1S1Q96B36 256 aa17.82■□□□□ 0.44
SFXN1-202ENST00000421887 OSCARQ8IYS5 282 aa17.73■□□□□ 0.43
SFXN1-202ENST00000421887 REM2Q8IYK8 340 aaPredicted RBP17.68■□□□□ 0.42
SFXN1-202ENST00000421887 ZBTB22O15209 634 aa17.58■□□□□ 0.4
SFXN1-202ENST00000421887 PIP4P2Q8N4L2 257 aa17.57■□□□□ 0.4
SFXN1-202ENST00000421887 SP7Q8TDD2 431 aaPredicted RBP17.57■□□□□ 0.4
SFXN1-202ENST00000421887 PITPNM1O00562 1244 aa17.5■□□□□ 0.39
SFXN1-202ENST00000421887 HAX1O00165 279 aa17.42■□□□□ 0.38
SFXN1-202ENST00000421887 ATXN8OSP0DMR3 200 aa17.4■□□□□ 0.38
SFXN1-202ENST00000421887 FXR2P51116 673 aaKnown RBP eCLIP17.38■□□□□ 0.37
SFXN1-202ENST00000421887 FBLN2P98095 1184 aa17.32■□□□□ 0.36
SFXN1-202ENST00000421887 SPDYE2BA6NHP3 402 aa17.27■□□□□ 0.36
SFXN1-202ENST00000421887 SPDYE6P0CI01 402 aa17.27■□□□□ 0.36
SFXN1-202ENST00000421887 SPDYE2Q495Y8 402 aa17.27■□□□□ 0.36
SFXN1-202ENST00000421887 CLEC11AQ9Y240 323 aa17.17■□□□□ 0.34
SFXN1-202ENST00000421887 EVX2Q03828 476 aa17.12■□□□□ 0.33
SFXN1-202ENST00000421887 MKRN4PQ13434 485 aaPredicted RBP17.09■□□□□ 0.33
SFXN1-202ENST00000421887 PRKAR2AP13861 404 aaKnown RBP17.08■□□□□ 0.32
SFXN1-202ENST00000421887 SPDYE1Q8NFV5 336 aaPredicted RBP17.08■□□□□ 0.32
SFXN1-202ENST00000421887 ZNF692Q9BU19 519 aaPredicted RBP17.08■□□□□ 0.32
SFXN1-202ENST00000421887 SSUH2Q9Y2M2 353 aa16.97■□□□□ 0.31
SFXN1-202ENST00000421887 CHADLQ6NUI6 762 aa16.84■□□□□ 0.29
SFXN1-202ENST00000421887 C19orf67A6NJJ6 358 aa16.83■□□□□ 0.28
SFXN1-202ENST00000421887 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
SFXN1-202ENST00000421887 PRR29P0C7W0 189 aa16.79■□□□□ 0.28
SFXN1-202ENST00000421887 GABBR2O75899 941 aa16.71■□□□□ 0.27
SFXN1-202ENST00000421887 CD44P16070 742 aaKnown RBP16.51■□□□□ 0.23
SFXN1-202ENST00000421887 LHX8Q68G74 356 aa16.51■□□□□ 0.23
SFXN1-202ENST00000421887 FARP1Q9Y4F1 1045 aaPredicted RBP16.5■□□□□ 0.23
SFXN1-202ENST00000421887 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
SFXN1-202ENST00000421887 POTEIP0CG38 1075 aa16.33■□□□□ 0.2
SFXN1-202ENST00000421887 CLCN6P51797 869 aa16.26■□□□□ 0.19
SFXN1-202ENST00000421887 DCBLD2Q96PD2 775 aa16.25■□□□□ 0.19
SFXN1-202ENST00000421887 ZRANB1Q9UGI0 708 aa16.25■□□□□ 0.19
SFXN1-202ENST00000421887 CREBZFQ9NS37 354 aa16.23■□□□□ 0.19
SFXN1-202ENST00000421887 STAG3Q9UJ98 1225 aa16.23■□□□□ 0.19
SFXN1-202ENST00000421887 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
SFXN1-202ENST00000421887 SPDYE4A6NLX3 237 aa16.17■□□□□ 0.18
SFXN1-202ENST00000421887 ZNF579Q8NAF0 562 aaKnown RBP16.17■□□□□ 0.18
SFXN1-202ENST00000421887 GALR2O43603 387 aaPredicted RBP16.07■□□□□ 0.16
SFXN1-202ENST00000421887 PAK3O75914 559 aaPredicted RBP16.04■□□□□ 0.16
SFXN1-202ENST00000421887 PHF12Q96QT6 1004 aa15.97■□□□□ 0.15
SFXN1-202ENST00000421887 NPM1P06748 294 aaKnown RBP eCLIP15.95■□□□□ 0.14
SFXN1-202ENST00000421887 MNX1P50219 401 aaPredicted RBP15.86■□□□□ 0.13
SFXN1-202ENST00000421887 PLSCR2Q9NRY7 297 aa15.82■□□□□ 0.12
SFXN1-202ENST00000421887 POTEB2H3BUK9 544 aa15.81■□□□□ 0.12
SFXN1-202ENST00000421887 OTUD5Q96G74 571 aa15.81■□□□□ 0.12
SFXN1-202ENST00000421887 PELP1Q8IZL8 1130 aaKnown RBP15.77■□□□□ 0.12
SFXN1-202ENST00000421887 MS4A3Q96HJ5 214 aa15.73■□□□□ 0.11
SFXN1-202ENST00000421887 TSPYL2Q9H2G4 693 aaPredicted RBP15.72■□□□□ 0.11
SFXN1-202ENST00000421887 METRNQ9UJH8 293 aa15.66■□□□□ 0.1
SFXN1-202ENST00000421887 ASTLQ6HA08 431 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms