RNA–Protein interactions for RNA: ENST00000415620.1

LINC00428-201, long intergenic non-protein coding RNA 428, humanhuman

TSL 5 BASIC

Gene LINC00428, Length 227 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00428-201ENST00000415620 AEBP2Q6ZN18 517 aaPredicted RBP19.37■□□□□ 0.69
LINC00428-201ENST00000415620 CHIC1Q5VXU3 224 aa18.21■□□□□ 0.51
LINC00428-201ENST00000415620 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
LINC00428-201ENST00000415620 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
LINC00428-201ENST00000415620 FOXD1Q16676 465 aa15.49■□□□□ 0.07
LINC00428-201ENST00000415620 MSH5O43196 834 aa14.65□□□□□ -0.06
LINC00428-201ENST00000415620 POTEDQ86YR6 584 aa14.65□□□□□ -0.06
LINC00428-201ENST00000415620 PLPPR3Q6T4P5 718 aa14.48□□□□□ -0.09
LINC00428-201ENST00000415620 PIAS4Q8N2W9 510 aaPredicted RBP14.45□□□□□ -0.1
LINC00428-201ENST00000415620 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
LINC00428-201ENST00000415620 ADRA2BP18089 450 aa14.24□□□□□ -0.13
LINC00428-201ENST00000415620 MAPK8IP2Q13387 824 aaPredicted RBP13.15□□□□□ -0.3
LINC00428-201ENST00000415620 DMRT2Q9Y5R5 561 aa13.13□□□□□ -0.31
LINC00428-201ENST00000415620 SCAF1Q9H7N4 1312 aaKnown RBP13.13□□□□□ -0.31
LINC00428-201ENST00000415620 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
LINC00428-201ENST00000415620 DCAF8L1A6NGE4 600 aa12.65□□□□□ -0.38
LINC00428-201ENST00000415620 PPP4R3CPQ6ZMV5 832 aa12.64□□□□□ -0.39
LINC00428-201ENST00000415620 HOXD11P31277 338 aaPredicted RBP12.56□□□□□ -0.4
LINC00428-201ENST00000415620 CNKSR2Q8WXI2 1034 aa12.48□□□□□ -0.41
LINC00428-201ENST00000415620 RNF39Q9H2S5 420 aa12.44□□□□□ -0.42
LINC00428-201ENST00000415620 RNF216Q9NWF9 866 aaPredicted RBP12.42□□□□□ -0.42
LINC00428-201ENST00000415620 C1QBPQ07021 282 aaKnown RBP12.28□□□□□ -0.44
LINC00428-201ENST00000415620 DNAJC5BQ9UF47 199 aa12.21□□□□□ -0.45
LINC00428-201ENST00000415620 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
LINC00428-201ENST00000415620 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC00428-201ENST00000415620 NPM3O75607 178 aaKnown RBP11.89□□□□□ -0.51
LINC00428-201ENST00000415620 U3KPZ7 1027 aaPredicted RBP11.67□□□□□ -0.54
LINC00428-201ENST00000415620 CAPN15O75808 1086 aa11.61□□□□□ -0.55
LINC00428-201ENST00000415620 DSG3P32926 999 aa11.57□□□□□ -0.56
LINC00428-201ENST00000415620 SPINK5Q9NQ38 1064 aaPredicted RBP11.57□□□□□ -0.56
LINC00428-201ENST00000415620 POTEHQ6S545 545 aa11.46□□□□□ -0.57
LINC00428-201ENST00000415620 KCNA4P22459 653 aa11.43□□□□□ -0.58
LINC00428-201ENST00000415620 APLP2Q06481 763 aa11.43□□□□□ -0.58
LINC00428-201ENST00000415620 SLC4A2P04920 1241 aa11.4□□□□□ -0.58
LINC00428-201ENST00000415620 TRHP20396 242 aaPredicted RBP11.37□□□□□ -0.59
LINC00428-201ENST00000415620 ZNF219Q9P2Y4 722 aaPredicted RBP11.35□□□□□ -0.59
LINC00428-201ENST00000415620 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.34□□□□□ -0.59
LINC00428-201ENST00000415620 HNRNPUL2Q1KMD3 747 aaKnown RBP11.34□□□□□ -0.59
LINC00428-201ENST00000415620 ABCB7O75027 752 aa11.29□□□□□ -0.6
LINC00428-201ENST00000415620 SAMD1Q6SPF0 538 aaPredicted RBP11.24□□□□□ -0.61
LINC00428-201ENST00000415620 RBM42Q9BTD8 480 aaKnown RBP11.1□□□□□ -0.63
LINC00428-201ENST00000415620 MYCNP04198 464 aaPredicted RBP11.04□□□□□ -0.64
LINC00428-201ENST00000415620 POLA2Q14181 598 aa11□□□□□ -0.65
LINC00428-201ENST00000415620 CHRDL2Q6WN34 429 aa10.91□□□□□ -0.66
LINC00428-201ENST00000415620 ZBTB12Q9Y330 459 aaPredicted RBP10.8□□□□□ -0.68
LINC00428-201ENST00000415620 SLC4A1APQ9BWU0 796 aaKnown RBP10.79□□□□□ -0.68
LINC00428-201ENST00000415620 FOXD4L1Q9NU39 408 aa10.79□□□□□ -0.68
LINC00428-201ENST00000415620 AKT1S1Q96B36 256 aa10.78□□□□□ -0.68
LINC00428-201ENST00000415620 ATF5Q9Y2D1 282 aaPredicted RBP10.74□□□□□ -0.69
LINC00428-201ENST00000415620 REM2Q8IYK8 340 aaPredicted RBP10.65□□□□□ -0.7
LINC00428-201ENST00000415620 OSCARQ8IYS5 282 aa10.63□□□□□ -0.71
LINC00428-201ENST00000415620 SP7Q8TDD2 431 aaPredicted RBP10.63□□□□□ -0.71
LINC00428-201ENST00000415620 PIP4P2Q8N4L2 257 aa10.59□□□□□ -0.71
LINC00428-201ENST00000415620 PITPNM1O00562 1244 aa10.52□□□□□ -0.73
LINC00428-201ENST00000415620 ZBTB22O15209 634 aa10.52□□□□□ -0.73
LINC00428-201ENST00000415620 HAX1O00165 279 aa10.5□□□□□ -0.73
LINC00428-201ENST00000415620 ATXN8OSP0DMR3 200 aa10.5□□□□□ -0.73
LINC00428-201ENST00000415620 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.73
LINC00428-201ENST00000415620 FBLN2P98095 1184 aa10.43□□□□□ -0.74
LINC00428-201ENST00000415620 SPDYE2BA6NHP3 402 aa10.42□□□□□ -0.74
LINC00428-201ENST00000415620 SPDYE6P0CI01 402 aa10.42□□□□□ -0.74
LINC00428-201ENST00000415620 SPDYE2Q495Y8 402 aa10.42□□□□□ -0.74
LINC00428-201ENST00000415620 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
LINC00428-201ENST00000415620 CLEC11AQ9Y240 323 aa10.3□□□□□ -0.76
LINC00428-201ENST00000415620 PRKAR2AP13861 404 aaKnown RBP10.28□□□□□ -0.76
LINC00428-201ENST00000415620 EVX2Q03828 476 aa10.28□□□□□ -0.76
LINC00428-201ENST00000415620 ZNF692Q9BU19 519 aaPredicted RBP10.26□□□□□ -0.77
LINC00428-201ENST00000415620 MKRN4PQ13434 485 aaPredicted RBP10.23□□□□□ -0.77
LINC00428-201ENST00000415620 SSUH2Q9Y2M2 353 aa10.22□□□□□ -0.77
LINC00428-201ENST00000415620 C19orf67A6NJJ6 358 aa10.17□□□□□ -0.78
LINC00428-201ENST00000415620 PRR29P0C7W0 189 aa10.11□□□□□ -0.79
LINC00428-201ENST00000415620 GABBR2O75899 941 aa10.09□□□□□ -0.79
LINC00428-201ENST00000415620 CHADLQ6NUI6 762 aa10.09□□□□□ -0.79
LINC00428-201ENST00000415620 PABPN1Q86U42 306 aaKnown RBP eCLIP10.09□□□□□ -0.79
LINC00428-201ENST00000415620 LHX8Q68G74 356 aa9.98□□□□□ -0.81
LINC00428-201ENST00000415620 CD44P16070 742 aaKnown RBP9.94□□□□□ -0.82
LINC00428-201ENST00000415620 FARP1Q9Y4F1 1045 aaPredicted RBP9.94□□□□□ -0.82
LINC00428-201ENST00000415620 CSRNP3Q8WYN3 585 aa9.93□□□□□ -0.82
LINC00428-201ENST00000415620 CLCN6P51797 869 aa9.92□□□□□ -0.82
LINC00428-201ENST00000415620 POTEIP0CG38 1075 aa9.82□□□□□ -0.84
LINC00428-201ENST00000415620 STAG3Q9UJ98 1225 aa9.81□□□□□ -0.84
LINC00428-201ENST00000415620 DCBLD2Q96PD2 775 aa9.8□□□□□ -0.84
LINC00428-201ENST00000415620 ZRANB1Q9UGI0 708 aa9.77□□□□□ -0.85
LINC00428-201ENST00000415620 ZNF579Q8NAF0 562 aaKnown RBP9.76□□□□□ -0.85
LINC00428-201ENST00000415620 CREBZFQ9NS37 354 aa9.75□□□□□ -0.85
LINC00428-201ENST00000415620 PAK3O75914 559 aaPredicted RBP9.69□□□□□ -0.86
LINC00428-201ENST00000415620 SPDYE4A6NLX3 237 aa9.68□□□□□ -0.86
LINC00428-201ENST00000415620 EHMT2Q96KQ7 1210 aa9.66□□□□□ -0.86
LINC00428-201ENST00000415620 GALR2O43603 387 aaPredicted RBP9.64□□□□□ -0.87
LINC00428-201ENST00000415620 NPM1P06748 294 aaKnown RBP eCLIP9.64□□□□□ -0.87
LINC00428-201ENST00000415620 PHF12Q96QT6 1004 aa9.58□□□□□ -0.88
LINC00428-201ENST00000415620 PLSCR2Q9NRY7 297 aa9.54□□□□□ -0.88
LINC00428-201ENST00000415620 OTUD5Q96G74 571 aa9.53□□□□□ -0.88
LINC00428-201ENST00000415620 MNX1P50219 401 aaPredicted RBP9.52□□□□□ -0.89
LINC00428-201ENST00000415620 POTEB2H3BUK9 544 aa9.49□□□□□ -0.89
LINC00428-201ENST00000415620 PELP1Q8IZL8 1130 aaKnown RBP9.46□□□□□ -0.9
LINC00428-201ENST00000415620 ASTLQ6HA08 431 aaPredicted RBP9.44□□□□□ -0.9
LINC00428-201ENST00000415620 SLC39A7Q92504 469 aa9.44□□□□□ -0.9
LINC00428-201ENST00000415620 MS4A3Q96HJ5 214 aa9.44□□□□□ -0.9
LINC00428-201ENST00000415620 C7P10643 843 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms