RNA–Protein interactions for RNA: ENST00000415472.6

RBM28-202, Transcript of RNA binding motif protein 28, humanhuman

TSL 2 BASIC

Gene RBM28, Length 2,251 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM28-202ENST00000415472 NISCHQ9Y2I1 1504 aa24.49■■□□□ 1.51
RBM28-202ENST00000415472 SHROOM4Q9ULL8 1493 aa20.92■□□□□ 0.94
RBM28-202ENST00000415472 CCDC180Q9P1Z9 1646 aa20.8■□□□□ 0.92
RBM28-202ENST00000415472 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
RBM28-202ENST00000415472 SUPT5HO00267 1087 aaKnown RBP20.45■□□□□ 0.86
RBM28-202ENST00000415472 DCAF8L2P0C7V8 631 aa20.36■□□□□ 0.85
RBM28-202ENST00000415472 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
RBM28-202ENST00000415472 CHIC1Q5VXU3 224 aa19.85■□□□□ 0.77
RBM28-202ENST00000415472 MYO15BQ96JP2 1530 aa19.83■□□□□ 0.76
RBM28-202ENST00000415472 SCRIBQ14160 1630 aa19.57■□□□□ 0.72
RBM28-202ENST00000415472 ABCC9O60706 1549 aa19.53■□□□□ 0.72
RBM28-202ENST00000415472 RSF1Q96T23 1441 aaPredicted RBP19.39■□□□□ 0.69
RBM28-202ENST00000415472 LOC105371045A0A1W2PR82 267 aa19.31■□□□□ 0.68
RBM28-202ENST00000415472 NACADO15069 1562 aa19.25■□□□□ 0.67
RBM28-202ENST00000415472 RB1CC1Q8TDY2 1594 aa19.2■□□□□ 0.66
RBM28-202ENST00000415472 CECR2Q9BXF3 1484 aa19.18■□□□□ 0.66
RBM28-202ENST00000415472 PCGF6Q9BYE7 350 aa19.17■□□□□ 0.66
RBM28-202ENST00000415472 HRCP23327 699 aa19.1■□□□□ 0.65
RBM28-202ENST00000415472 MROH2BQ7Z745 1585 aa19.09■□□□□ 0.65
RBM28-202ENST00000415472 TRIM41Q8WV44 630 aa19■□□□□ 0.63
RBM28-202ENST00000415472 WIZO95785 1651 aa18.98■□□□□ 0.63
RBM28-202ENST00000415472 FAM9AQ8IZU1 332 aaPredicted RBP18.92■□□□□ 0.62
RBM28-202ENST00000415472 PPARGC1BQ86YN6 1023 aaKnown RBP18.82■□□□□ 0.6
RBM28-202ENST00000415472 EHMT2Q96KQ7 1210 aa18.8■□□□□ 0.6
RBM28-202ENST00000415472 BAZ1AQ9NRL2 1556 aaPredicted RBP18.8■□□□□ 0.6
RBM28-202ENST00000415472 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.59
RBM28-202ENST00000415472 TRIM26Q12899 539 aaPredicted RBP18.76■□□□□ 0.59
RBM28-202ENST00000415472 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
RBM28-202ENST00000415472 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
RBM28-202ENST00000415472 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
RBM28-202ENST00000415472 CCDC88BA6NC98 1476 aa18.59■□□□□ 0.57
RBM28-202ENST00000415472 PABPN1Q86U42 306 aaKnown RBP eCLIP18.58■□□□□ 0.57
RBM28-202ENST00000415472 SMARCA2P51531 1590 aa18.56■□□□□ 0.56
RBM28-202ENST00000415472 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
RBM28-202ENST00000415472 BICRAQ9NZM4 1560 aa18.53■□□□□ 0.56
RBM28-202ENST00000415472 SOGA1O94964 1423 aa18.36■□□□□ 0.53
RBM28-202ENST00000415472 RUSC2Q8N2Y8 1516 aa18.3■□□□□ 0.52
RBM28-202ENST00000415472 PEG3Q9GZU2 1588 aa18.29■□□□□ 0.52
RBM28-202ENST00000415472 ZEB1P37275 1124 aaPredicted RBP18.23■□□□□ 0.51
RBM28-202ENST00000415472 ATAD2BQ9ULI0 1458 aa18.21■□□□□ 0.51
RBM28-202ENST00000415472 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
RBM28-202ENST00000415472 CSRNP3Q8WYN3 585 aa18.19■□□□□ 0.5
RBM28-202ENST00000415472 WRNQ14191 1432 aaPredicted RBP eCLIP18.18■□□□□ 0.5
RBM28-202ENST00000415472 TTBK1Q5TCY1 1321 aaPredicted RBP18.17■□□□□ 0.5
RBM28-202ENST00000415472 TNIKQ9UKE5 1360 aa18.15■□□□□ 0.5
RBM28-202ENST00000415472 SYNJ1O43426 1573 aa18.14■□□□□ 0.49
RBM28-202ENST00000415472 BAZ1BQ9UIG0 1483 aaKnown RBP18.14■□□□□ 0.49
RBM28-202ENST00000415472 EEA1Q15075 1411 aa18.12■□□□□ 0.49
RBM28-202ENST00000415472 UBTFP17480 764 aaKnown RBP18.11■□□□□ 0.49
RBM28-202ENST00000415472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.1■□□□□ 0.49
RBM28-202ENST00000415472 GOLGA3Q08378 1498 aa18.05■□□□□ 0.48
RBM28-202ENST00000415472 CCER1Q8TC90 406 aaPredicted RBP17.98■□□□□ 0.47
RBM28-202ENST00000415472 CEP164Q9UPV0 1460 aa17.94■□□□□ 0.46
RBM28-202ENST00000415472 KIF21BO75037 1637 aa17.94■□□□□ 0.46
RBM28-202ENST00000415472 RAPGEF2Q9Y4G8 1499 aa17.9■□□□□ 0.46
RBM28-202ENST00000415472 TOP2BQ02880 1626 aa17.88■□□□□ 0.45
RBM28-202ENST00000415472 CLIP1P30622 1438 aa17.87■□□□□ 0.45
RBM28-202ENST00000415472 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
RBM28-202ENST00000415472 NCAPD3P42695 1498 aa17.84■□□□□ 0.45
RBM28-202ENST00000415472 HMGXB3Q12766 1538 aa17.81■□□□□ 0.44
RBM28-202ENST00000415472 BIVM-ERCC5R4GMW8 1640 aa17.81■□□□□ 0.44
RBM28-202ENST00000415472 VPS8Q8N3P4 1428 aa17.77■□□□□ 0.43
RBM28-202ENST00000415472 CUX1P39880 1505 aa17.76■□□□□ 0.43
RBM28-202ENST00000415472 HNRNPUL2Q1KMD3 747 aaKnown RBP17.72■□□□□ 0.43
RBM28-202ENST00000415472 PRXQ9BXM0 1461 aa17.7■□□□□ 0.42
RBM28-202ENST00000415472 CFTRP13569 1480 aa17.7■□□□□ 0.42
RBM28-202ENST00000415472 ERICH3Q5RHP9 1530 aa17.65■□□□□ 0.42
RBM28-202ENST00000415472 APLP2Q06481 763 aa17.62■□□□□ 0.41
RBM28-202ENST00000415472 ARAP1Q96P48 1450 aa17.62■□□□□ 0.41
RBM28-202ENST00000415472 KIF27Q86VH2 1401 aa17.6■□□□□ 0.41
RBM28-202ENST00000415472 DIEXFQ68CQ4 756 aaKnown RBP17.6■□□□□ 0.41
RBM28-202ENST00000415472 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
RBM28-202ENST00000415472 KANK4Q5T7N3 995 aaPredicted RBP17.55■□□□□ 0.4
RBM28-202ENST00000415472 PRDM2Q13029 1718 aa17.52■□□□□ 0.39
RBM28-202ENST00000415472 CADPSQ9ULU8 1353 aa17.5■□□□□ 0.39
RBM28-202ENST00000415472 CUX2O14529 1486 aa17.48■□□□□ 0.39
RBM28-202ENST00000415472 ARHGAP35Q9NRY4 1499 aa17.47■□□□□ 0.39
RBM28-202ENST00000415472 ZNF316A6NFI3 1004 aaPredicted RBP17.47■□□□□ 0.39
RBM28-202ENST00000415472 IGF1RP08069 1367 aa17.47■□□□□ 0.39
RBM28-202ENST00000415472 CC2D2AQ9P2K1 1620 aa17.46■□□□□ 0.39
RBM28-202ENST00000415472 NEUROD1Q13562 356 aa17.44■□□□□ 0.38
RBM28-202ENST00000415472 FGD5Q6ZNL6 1462 aa17.44■□□□□ 0.38
RBM28-202ENST00000415472 ACIN1Q9UKV3 1341 aaKnown RBP17.4■□□□□ 0.38
RBM28-202ENST00000415472 CARMIL1Q5VZK9 1371 aa17.37■□□□□ 0.37
RBM28-202ENST00000415472 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
RBM28-202ENST00000415472 DHX57Q6P158 1386 aaKnown RBP17.35■□□□□ 0.37
RBM28-202ENST00000415472 RRBP1Q9P2E9 1410 aaKnown RBP17.35■□□□□ 0.37
RBM28-202ENST00000415472 NESP48681 1621 aa17.32■□□□□ 0.36
RBM28-202ENST00000415472 RAD54L2Q9Y4B4 1467 aa17.3■□□□□ 0.36
RBM28-202ENST00000415472 CCNB3Q8WWL7 1395 aa17.28■□□□□ 0.36
RBM28-202ENST00000415472 MIER1Q8N108 512 aa17.28■□□□□ 0.36
RBM28-202ENST00000415472 ITGAEP38570 1179 aa17.28■□□□□ 0.36
RBM28-202ENST00000415472 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
RBM28-202ENST00000415472 TIAM1Q13009 1591 aa17.24■□□□□ 0.35
RBM28-202ENST00000415472 POLA1P09884 1462 aaPredicted RBP17.24■□□□□ 0.35
RBM28-202ENST00000415472 DNMBPQ6XZF7 1577 aa17.24■□□□□ 0.35
RBM28-202ENST00000415472 TOPBP1Q92547 1522 aa17.23■□□□□ 0.35
RBM28-202ENST00000415472 CENPBP07199 599 aaPredicted RBP17.23■□□□□ 0.35
RBM28-202ENST00000415472 YTHDC1Q96MU7 727 aaKnown RBP17.22■□□□□ 0.35
RBM28-202ENST00000415472 GTF3C3Q9Y5Q9 886 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms