RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 AEBP2Q6ZN18 517 aaPredicted RBP15.39■□□□□ 0.05
VPS41-205ENST00000414632 CHIC1Q5VXU3 224 aa15.29■□□□□ 0.04
VPS41-205ENST00000414632 PHF23Q9BUL5 403 aaPredicted RBP13.53□□□□□ -0.24
VPS41-205ENST00000414632 SENP3Q9H4L4 574 aaPredicted RBP13.09□□□□□ -0.31
VPS41-205ENST00000414632 PLPPR3Q6T4P5 718 aa12.64□□□□□ -0.39
VPS41-205ENST00000414632 FOXD1Q16676 465 aa12.12□□□□□ -0.47
VPS41-205ENST00000414632 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
VPS41-205ENST00000414632 ADRA2BP18089 450 aa11.87□□□□□ -0.51
VPS41-205ENST00000414632 PPP6R1Q9UPN7 881 aa11.79□□□□□ -0.52
VPS41-205ENST00000414632 NISCHQ9Y2I1 1504 aa11.79□□□□□ -0.52
VPS41-205ENST00000414632 KCNA4P22459 653 aa11.55□□□□□ -0.56
VPS41-205ENST00000414632 PIAS4Q8N2W9 510 aaPredicted RBP11.45□□□□□ -0.58
VPS41-205ENST00000414632 EHMT2Q96KQ7 1210 aa11.37□□□□□ -0.59
VPS41-205ENST00000414632 PPP4R3CPQ6ZMV5 832 aa11.22□□□□□ -0.61
VPS41-205ENST00000414632 MSH5O43196 834 aa11.2□□□□□ -0.62
VPS41-205ENST00000414632 SLC4A1APQ9BWU0 796 aaKnown RBP11.08□□□□□ -0.64
VPS41-205ENST00000414632 NCBP3Q53F19 620 aaKnown RBP11.06□□□□□ -0.64
VPS41-205ENST00000414632 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
VPS41-205ENST00000414632 NPM3O75607 178 aaKnown RBP10.91□□□□□ -0.66
VPS41-205ENST00000414632 CNKSR2Q8WXI2 1034 aa10.77□□□□□ -0.69
VPS41-205ENST00000414632 SCAF1Q9H7N4 1312 aaKnown RBP10.77□□□□□ -0.69
VPS41-205ENST00000414632 ZBTB22O15209 634 aa10.64□□□□□ -0.71
VPS41-205ENST00000414632 MAPK8IP2Q13387 824 aaPredicted RBP10.58□□□□□ -0.72
VPS41-205ENST00000414632 CCDC180Q9P1Z9 1646 aa10.52□□□□□ -0.73
VPS41-205ENST00000414632 DNAJC5BQ9UF47 199 aa10.48□□□□□ -0.73
VPS41-205ENST00000414632 FOXD4L1Q9NU39 408 aa10.45□□□□□ -0.74
VPS41-205ENST00000414632 RNF216Q9NWF9 866 aaPredicted RBP10.44□□□□□ -0.74
VPS41-205ENST00000414632 DMRT2Q9Y5R5 561 aa10.44□□□□□ -0.74
VPS41-205ENST00000414632 ABCC9O60706 1549 aa10.31□□□□□ -0.76
VPS41-205ENST00000414632 HOXD11P31277 338 aaPredicted RBP10.26□□□□□ -0.77
VPS41-205ENST00000414632 SLC4A2P04920 1241 aa10.19□□□□□ -0.78
VPS41-205ENST00000414632 MYCNP04198 464 aaPredicted RBP10.04□□□□□ -0.8
VPS41-205ENST00000414632 ATXN8OSP0DMR3 200 aa10.04□□□□□ -0.8
VPS41-205ENST00000414632 DCAF8L1A6NGE4 600 aa9.99□□□□□ -0.81
VPS41-205ENST00000414632 RTN4Q9NQC3 1192 aaKnown RBP9.93□□□□□ -0.82
VPS41-205ENST00000414632 FKBP8Q14318 412 aa9.91□□□□□ -0.82
VPS41-205ENST00000414632 AMER1Q5JTC6 1135 aaPredicted RBP9.9□□□□□ -0.82
VPS41-205ENST00000414632 DCAF8L2P0C7V8 631 aa9.89□□□□□ -0.83
VPS41-205ENST00000414632 CACNB1Q02641 598 aaPredicted RBP9.89□□□□□ -0.83
VPS41-205ENST00000414632 RB1CC1Q8TDY2 1594 aa9.88□□□□□ -0.83
VPS41-205ENST00000414632 NACADO15069 1562 aa9.84□□□□□ -0.83
VPS41-205ENST00000414632 ZCCHC6Q5VYS8 1495 aaKnown RBP9.82□□□□□ -0.84
VPS41-205ENST00000414632 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.81□□□□□ -0.841e-6■■■■□ 19.8
VPS41-205ENST00000414632 SLC24A1O60721 1099 aa9.79□□□□□ -0.84
VPS41-205ENST00000414632 UNC13AQ9UPW8 1703 aa9.79□□□□□ -0.84
VPS41-205ENST00000414632 ATF5Q9Y2D1 282 aaPredicted RBP9.78□□□□□ -0.84
VPS41-205ENST00000414632 MYO15BQ96JP2 1530 aa9.72□□□□□ -0.85
VPS41-205ENST00000414632 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.72□□□□□ -0.85
VPS41-205ENST00000414632 HNRNPUL2Q1KMD3 747 aaKnown RBP9.72□□□□□ -0.85
VPS41-205ENST00000414632 SAMD1Q6SPF0 538 aaPredicted RBP9.72□□□□□ -0.85
VPS41-205ENST00000414632 DCAF1Q9Y4B6 1507 aa9.7□□□□□ -0.86
VPS41-205ENST00000414632 U3KPZ7 1027 aaPredicted RBP9.69□□□□□ -0.86
VPS41-205ENST00000414632 SCRIBQ14160 1630 aa9.65□□□□□ -0.86
VPS41-205ENST00000414632 PABPN1Q86U42 306 aaKnown RBP eCLIP9.62□□□□□ -0.87
VPS41-205ENST00000414632 BICRAQ9NZM4 1560 aa9.61□□□□□ -0.87
VPS41-205ENST00000414632 RNF39Q9H2S5 420 aa9.58□□□□□ -0.88
VPS41-205ENST00000414632 ZNF219Q9P2Y4 722 aaPredicted RBP9.56□□□□□ -0.88
VPS41-205ENST00000414632 C1QBPQ07021 282 aaKnown RBP9.49□□□□□ -0.89
VPS41-205ENST00000414632 APLP2Q06481 763 aa9.48□□□□□ -0.89
VPS41-205ENST00000414632 SPDYE4A6NLX3 237 aa9.41□□□□□ -0.9
VPS41-205ENST00000414632 FBXO3Q9UK99 471 aa9.4□□□□□ -0.9
VPS41-205ENST00000414632 SHROOM4Q9ULL8 1493 aa9.4□□□□□ -0.91
VPS41-205ENST00000414632 MKRN4PQ13434 485 aaPredicted RBP9.37□□□□□ -0.91
VPS41-205ENST00000414632 EIF4G1Q04637 1599 aaKnown RBP9.35□□□□□ -0.91
VPS41-205ENST00000414632 CC2D2AQ9P2K1 1620 aa9.33□□□□□ -0.92
VPS41-205ENST00000414632 FBLN2P98095 1184 aa9.31□□□□□ -0.92
VPS41-205ENST00000414632 SPINK5Q9NQ38 1064 aaPredicted RBP9.31□□□□□ -0.92
VPS41-205ENST00000414632 TRHP20396 242 aaPredicted RBP9.3□□□□□ -0.92
VPS41-205ENST00000414632 PROM2Q8N271 834 aa9.3□□□□□ -0.92
VPS41-205ENST00000414632 CAPN15O75808 1086 aa9.29□□□□□ -0.92
VPS41-205ENST00000414632 POTEHQ6S545 545 aa9.29□□□□□ -0.92
VPS41-205ENST00000414632 POLA2Q14181 598 aa9.27□□□□□ -0.93
VPS41-205ENST00000414632 VASPP50552 380 aaPredicted RBP9.26□□□□□ -0.93
VPS41-205ENST00000414632 CECR2Q9BXF3 1484 aa9.23□□□□□ -0.93
VPS41-205ENST00000414632 SMARCA4P51532 1647 aa9.2□□□□□ -0.94
VPS41-205ENST00000414632 IFNLR1Q8IU57 520 aaPredicted RBP9.19□□□□□ -0.94
VPS41-205ENST00000414632 PLCB2Q00722 1185 aa9.15□□□□□ -0.94
VPS41-205ENST00000414632 BAZ1AQ9NRL2 1556 aaPredicted RBP9.13□□□□□ -0.95
VPS41-205ENST00000414632 DSG3P32926 999 aa9.13□□□□□ -0.95
VPS41-205ENST00000414632 MROH2BQ7Z745 1585 aa9.12□□□□□ -0.95
VPS41-205ENST00000414632 ZBTB12Q9Y330 459 aaPredicted RBP9.11□□□□□ -0.95
VPS41-205ENST00000414632 ABCB7O75027 752 aa9.1□□□□□ -0.95
VPS41-205ENST00000414632 ATAD2BQ9ULI0 1458 aa9.09□□□□□ -0.95
VPS41-205ENST00000414632 SMARCA2P51531 1590 aa9.08□□□□□ -0.96
VPS41-205ENST00000414632 PKD2Q13563 968 aa9.08□□□□□ -0.96
VPS41-205ENST00000414632 WIZO95785 1651 aa9.07□□□□□ -0.96
VPS41-205ENST00000414632 NCAPD3P42695 1498 aa9.05□□□□□ -0.96
VPS41-205ENST00000414632 HMGXB3Q12766 1538 aa9.05□□□□□ -0.96
VPS41-205ENST00000414632 PEG3Q9GZU2 1588 aa9.04□□□□□ -0.96
VPS41-205ENST00000414632 BAZ1BQ9UIG0 1483 aaKnown RBP9.03□□□□□ -0.96
VPS41-205ENST00000414632 HAP1P54257 671 aaPredicted RBP9.03□□□□□ -0.96
VPS41-205ENST00000414632 KLHL34Q8N239 644 aa9.02□□□□□ -0.97
VPS41-205ENST00000414632 SPOCK2Q92563 424 aa8.99□□□□□ -0.97
VPS41-205ENST00000414632 ZNF692Q9BU19 519 aaPredicted RBP8.99□□□□□ -0.97
VPS41-205ENST00000414632 RSF1Q96T23 1441 aaPredicted RBP8.97□□□□□ -0.97
VPS41-205ENST00000414632 STAG3Q9UJ98 1225 aa8.96□□□□□ -0.98
VPS41-205ENST00000414632 SPDYE2BA6NHP3 402 aa8.93□□□□□ -0.98
VPS41-205ENST00000414632 SPDYE6P0CI01 402 aa8.93□□□□□ -0.98
VPS41-205ENST00000414632 SPDYE2Q495Y8 402 aa8.93□□□□□ -0.98
VPS41-205ENST00000414632 NESP48681 1621 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms