RNA–Protein interactions for RNA: ENST00000412393.5

LINC00342-201, long intergenic non-protein coding RNA 342, humanhuman

TSL 3 BASIC

Gene LINC00342, Length 654 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-201ENST00000412393 AEBP2Q6ZN18 517 aaPredicted RBP27.01■■□□□ 1.91
LINC00342-201ENST00000412393 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
LINC00342-201ENST00000412393 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
LINC00342-201ENST00000412393 PHF23Q9BUL5 403 aaPredicted RBP22.84■■□□□ 1.25
LINC00342-201ENST00000412393 FOXD1Q16676 465 aa21.6■■□□□ 1.05
LINC00342-201ENST00000412393 MSH5O43196 834 aa20.52■□□□□ 0.88
LINC00342-201ENST00000412393 POTEDQ86YR6 584 aa20.39■□□□□ 0.85
LINC00342-201ENST00000412393 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
LINC00342-201ENST00000412393 PIAS4Q8N2W9 510 aaPredicted RBP20.15■□□□□ 0.82
LINC00342-201ENST00000412393 PPP6R1Q9UPN7 881 aa19.89■□□□□ 0.77
LINC00342-201ENST00000412393 ADRA2BP18089 450 aa19.81■□□□□ 0.76
LINC00342-201ENST00000412393 SCAF1Q9H7N4 1312 aaKnown RBP18.39■□□□□ 0.53
LINC00342-201ENST00000412393 DMRT2Q9Y5R5 561 aa18.38■□□□□ 0.53
LINC00342-201ENST00000412393 MAPK8IP2Q13387 824 aaPredicted RBP18.25■□□□□ 0.51
LINC00342-201ENST00000412393 CACNB1Q02641 598 aaPredicted RBP17.69■□□□□ 0.42
LINC00342-201ENST00000412393 PPP4R3CPQ6ZMV5 832 aa17.64■□□□□ 0.41
LINC00342-201ENST00000412393 HOXD11P31277 338 aaPredicted RBP17.6■□□□□ 0.41
LINC00342-201ENST00000412393 DCAF8L1A6NGE4 600 aa17.54■□□□□ 0.4
LINC00342-201ENST00000412393 CNKSR2Q8WXI2 1034 aa17.47■□□□□ 0.39
LINC00342-201ENST00000412393 RNF216Q9NWF9 866 aaPredicted RBP17.41■□□□□ 0.38
LINC00342-201ENST00000412393 RNF39Q9H2S5 420 aa17.4■□□□□ 0.38
LINC00342-201ENST00000412393 DNAJC5BQ9UF47 199 aa17.23■□□□□ 0.35
LINC00342-201ENST00000412393 C1QBPQ07021 282 aaKnown RBP17.21■□□□□ 0.35
LINC00342-201ENST00000412393 NCBP3Q53F19 620 aaKnown RBP17.02■□□□□ 0.32
LINC00342-201ENST00000412393 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.73■□□□□ 0.27
LINC00342-201ENST00000412393 NPM3O75607 178 aaKnown RBP16.61■□□□□ 0.25
LINC00342-201ENST00000412393 U3KPZ7 1027 aaPredicted RBP16.29■□□□□ 0.2
LINC00342-201ENST00000412393 CAPN15O75808 1086 aa16.16■□□□□ 0.18
LINC00342-201ENST00000412393 DSG3P32926 999 aa16.15■□□□□ 0.18
LINC00342-201ENST00000412393 SPINK5Q9NQ38 1064 aaPredicted RBP16.09■□□□□ 0.17
LINC00342-201ENST00000412393 APLP2Q06481 763 aa16.06■□□□□ 0.16
LINC00342-201ENST00000412393 KCNA4P22459 653 aa15.96■□□□□ 0.15
LINC00342-201ENST00000412393 POTEHQ6S545 545 aa15.96■□□□□ 0.15
LINC00342-201ENST00000412393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.95■□□□□ 0.14
LINC00342-201ENST00000412393 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
LINC00342-201ENST00000412393 SLC4A2P04920 1241 aa15.91■□□□□ 0.14
LINC00342-201ENST00000412393 ZNF219Q9P2Y4 722 aaPredicted RBP15.91■□□□□ 0.14
LINC00342-201ENST00000412393 TRHP20396 242 aaPredicted RBP15.79■□□□□ 0.12
LINC00342-201ENST00000412393 SAMD1Q6SPF0 538 aaPredicted RBP15.78■□□□□ 0.12
LINC00342-201ENST00000412393 ABCB7O75027 752 aa15.66■□□□□ 0.1
LINC00342-201ENST00000412393 RBM42Q9BTD8 480 aaKnown RBP15.58■□□□□ 0.08
LINC00342-201ENST00000412393 MYCNP04198 464 aaPredicted RBP15.47■□□□□ 0.07
LINC00342-201ENST00000412393 POLA2Q14181 598 aa15.33■□□□□ 0.04
LINC00342-201ENST00000412393 CHRDL2Q6WN34 429 aa15.24■□□□□ 0.03
LINC00342-201ENST00000412393 ZBTB12Q9Y330 459 aaPredicted RBP15.19■□□□□ 0.02
LINC00342-201ENST00000412393 FOXD4L1Q9NU39 408 aa15.11■□□□□ 0.01
LINC00342-201ENST00000412393 AKT1S1Q96B36 256 aa15.09■□□□□ 0.01
LINC00342-201ENST00000412393 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0
LINC00342-201ENST00000412393 ATF5Q9Y2D1 282 aaPredicted RBP14.93□□□□□ -0.02
LINC00342-201ENST00000412393 REM2Q8IYK8 340 aaPredicted RBP14.86□□□□□ -0.03
LINC00342-201ENST00000412393 SP7Q8TDD2 431 aaPredicted RBP14.83□□□□□ -0.04
LINC00342-201ENST00000412393 OSCARQ8IYS5 282 aa14.81□□□□□ -0.04
LINC00342-201ENST00000412393 ATXN8OSP0DMR3 200 aa14.79□□□□□ -0.04
LINC00342-201ENST00000412393 PIP4P2Q8N4L2 257 aa14.76□□□□□ -0.05
LINC00342-201ENST00000412393 PITPNM1O00562 1244 aa14.68□□□□□ -0.06
LINC00342-201ENST00000412393 FXR2P51116 673 aaKnown RBP eCLIP14.67□□□□□ -0.06
LINC00342-201ENST00000412393 SPDYE2BA6NHP3 402 aa14.62□□□□□ -0.07
LINC00342-201ENST00000412393 SPDYE6P0CI01 402 aa14.62□□□□□ -0.07
LINC00342-201ENST00000412393 SPDYE2Q495Y8 402 aa14.62□□□□□ -0.07
LINC00342-201ENST00000412393 ZBTB22O15209 634 aa14.61□□□□□ -0.07
LINC00342-201ENST00000412393 HAX1O00165 279 aa14.6□□□□□ -0.07
LINC00342-201ENST00000412393 FBLN2P98095 1184 aa14.59□□□□□ -0.07
LINC00342-201ENST00000412393 SPDYE1Q8NFV5 336 aaPredicted RBP14.43□□□□□ -0.1
LINC00342-201ENST00000412393 SSUH2Q9Y2M2 353 aa14.34□□□□□ -0.11
LINC00342-201ENST00000412393 ZNF692Q9BU19 519 aaPredicted RBP14.32□□□□□ -0.12
LINC00342-201ENST00000412393 PRKAR2AP13861 404 aaKnown RBP14.31□□□□□ -0.12
LINC00342-201ENST00000412393 CLEC11AQ9Y240 323 aa14.3□□□□□ -0.12
LINC00342-201ENST00000412393 MKRN4PQ13434 485 aaPredicted RBP14.28□□□□□ -0.12
LINC00342-201ENST00000412393 EVX2Q03828 476 aa14.26□□□□□ -0.13
LINC00342-201ENST00000412393 C19orf67A6NJJ6 358 aa14.21□□□□□ -0.13
LINC00342-201ENST00000412393 PRR29P0C7W0 189 aa14.09□□□□□ -0.15
LINC00342-201ENST00000412393 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
LINC00342-201ENST00000412393 GABBR2O75899 941 aa14.04□□□□□ -0.16
LINC00342-201ENST00000412393 CLCN6P51797 869 aa13.99□□□□□ -0.17
LINC00342-201ENST00000412393 CHADLQ6NUI6 762 aa13.99□□□□□ -0.17
LINC00342-201ENST00000412393 LHX8Q68G74 356 aa13.89□□□□□ -0.19
LINC00342-201ENST00000412393 FARP1Q9Y4F1 1045 aaPredicted RBP13.87□□□□□ -0.19
LINC00342-201ENST00000412393 CD44P16070 742 aaKnown RBP13.86□□□□□ -0.19
LINC00342-201ENST00000412393 STAG3Q9UJ98 1225 aa13.78□□□□□ -0.2
LINC00342-201ENST00000412393 CSRNP3Q8WYN3 585 aa13.71□□□□□ -0.21
LINC00342-201ENST00000412393 ZNF579Q8NAF0 562 aaKnown RBP13.68□□□□□ -0.22
LINC00342-201ENST00000412393 POTEIP0CG38 1075 aa13.67□□□□□ -0.22
LINC00342-201ENST00000412393 DCBLD2Q96PD2 775 aa13.66□□□□□ -0.22
LINC00342-201ENST00000412393 CREBZFQ9NS37 354 aa13.6□□□□□ -0.23
LINC00342-201ENST00000412393 ZRANB1Q9UGI0 708 aa13.59□□□□□ -0.23
LINC00342-201ENST00000412393 PAK3O75914 559 aaPredicted RBP13.54□□□□□ -0.24
LINC00342-201ENST00000412393 SPDYE4A6NLX3 237 aa13.53□□□□□ -0.24
LINC00342-201ENST00000412393 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
LINC00342-201ENST00000412393 GALR2O43603 387 aaPredicted RBP13.42□□□□□ -0.26
LINC00342-201ENST00000412393 MNX1P50219 401 aaPredicted RBP13.33□□□□□ -0.28
LINC00342-201ENST00000412393 PHF12Q96QT6 1004 aa13.31□□□□□ -0.28
LINC00342-201ENST00000412393 EHMT2Q96KQ7 1210 aa13.3□□□□□ -0.28
LINC00342-201ENST00000412393 OTUD5Q96G74 571 aa13.27□□□□□ -0.29
LINC00342-201ENST00000412393 ASTLQ6HA08 431 aaPredicted RBP13.23□□□□□ -0.29
LINC00342-201ENST00000412393 C7P10643 843 aa13.2□□□□□ -0.3
LINC00342-201ENST00000412393 PROM2Q8N271 834 aa13.2□□□□□ -0.3
LINC00342-201ENST00000412393 SLC39A7Q92504 469 aa13.2□□□□□ -0.3
LINC00342-201ENST00000412393 POTEB2H3BUK9 544 aa13.19□□□□□ -0.3
LINC00342-201ENST00000412393 PLSCR2Q9NRY7 297 aa13.17□□□□□ -0.3
LINC00342-201ENST00000412393 MAMSTRQ6ZN01 415 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms