RNA–Protein interactions for RNA: ENST00000410731.1

RNU4-55P-201, Transcript of RNA, U4 small nuclear 55, pseudogene, humanhuman

BASIC

Gene RNU4-55P, Length 137 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-55P-201ENST00000410731 AEBP2Q6ZN18 517 aaPredicted RBP21.19■□□□□ 0.98
RNU4-55P-201ENST00000410731 CHIC1Q5VXU3 224 aa20.53■□□□□ 0.88
RNU4-55P-201ENST00000410731 SENP3Q9H4L4 574 aaPredicted RBP18.04■□□□□ 0.48
RNU4-55P-201ENST00000410731 PHF23Q9BUL5 403 aaPredicted RBP18.01■□□□□ 0.47
RNU4-55P-201ENST00000410731 FOXD1Q16676 465 aa16.74■□□□□ 0.27
RNU4-55P-201ENST00000410731 PLPPR3Q6T4P5 718 aa16.59■□□□□ 0.25
RNU4-55P-201ENST00000410731 PPP6R1Q9UPN7 881 aa15.93■□□□□ 0.14
RNU4-55P-201ENST00000410731 ADRA2BP18089 450 aa15.9■□□□□ 0.14
RNU4-55P-201ENST00000410731 PIAS4Q8N2W9 510 aaPredicted RBP15.74■□□□□ 0.11
RNU4-55P-201ENST00000410731 MSH5O43196 834 aa15.54■□□□□ 0.08
RNU4-55P-201ENST00000410731 POTEDQ86YR6 584 aa14.67□□□□□ -0.06
RNU4-55P-201ENST00000410731 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
RNU4-55P-201ENST00000410731 PPP4R3CPQ6ZMV5 832 aa14.58□□□□□ -0.08
RNU4-55P-201ENST00000410731 MAPK8IP2Q13387 824 aaPredicted RBP14.47□□□□□ -0.09
RNU4-55P-201ENST00000410731 DMRT2Q9Y5R5 561 aa14.37□□□□□ -0.11
RNU4-55P-201ENST00000410731 CNKSR2Q8WXI2 1034 aa14.23□□□□□ -0.13
RNU4-55P-201ENST00000410731 NCBP3Q53F19 620 aaKnown RBP14.16□□□□□ -0.14
RNU4-55P-201ENST00000410731 KCNA4P22459 653 aa14.01□□□□□ -0.17
RNU4-55P-201ENST00000410731 HOXD11P31277 338 aaPredicted RBP14□□□□□ -0.17
RNU4-55P-201ENST00000410731 RNF216Q9NWF9 866 aaPredicted RBP14□□□□□ -0.17
RNU4-55P-201ENST00000410731 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
RNU4-55P-201ENST00000410731 DCAF8L1A6NGE4 600 aa13.7□□□□□ -0.22
RNU4-55P-201ENST00000410731 DNAJC5BQ9UF47 199 aa13.63□□□□□ -0.23
RNU4-55P-201ENST00000410731 SLC4A1APQ9BWU0 796 aaKnown RBP13.32□□□□□ -0.28
RNU4-55P-201ENST00000410731 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.28
RNU4-55P-201ENST00000410731 RNF39Q9H2S5 420 aa13.29□□□□□ -0.28
RNU4-55P-201ENST00000410731 SLC4A2P04920 1241 aa13.2□□□□□ -0.3
RNU4-55P-201ENST00000410731 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
RNU4-55P-201ENST00000410731 U3KPZ7 1027 aaPredicted RBP13.09□□□□□ -0.31
RNU4-55P-201ENST00000410731 CACNB1Q02641 598 aaPredicted RBP13.06□□□□□ -0.32
RNU4-55P-201ENST00000410731 FOXD4L1Q9NU39 408 aa12.98□□□□□ -0.33
RNU4-55P-201ENST00000410731 ZBTB22O15209 634 aa12.9□□□□□ -0.34
RNU4-55P-201ENST00000410731 MYCNP04198 464 aaPredicted RBP12.9□□□□□ -0.34
RNU4-55P-201ENST00000410731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
RNU4-55P-201ENST00000410731 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
RNU4-55P-201ENST00000410731 SAMD1Q6SPF0 538 aaPredicted RBP12.83□□□□□ -0.36
RNU4-55P-201ENST00000410731 APLP2Q06481 763 aa12.8□□□□□ -0.36
RNU4-55P-201ENST00000410731 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
RNU4-55P-201ENST00000410731 CAPN15O75808 1086 aa12.72□□□□□ -0.37
RNU4-55P-201ENST00000410731 EHMT2Q96KQ7 1210 aa12.7□□□□□ -0.38
RNU4-55P-201ENST00000410731 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
RNU4-55P-201ENST00000410731 ZNF219Q9P2Y4 722 aaPredicted RBP12.65□□□□□ -0.38
RNU4-55P-201ENST00000410731 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
RNU4-55P-201ENST00000410731 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
RNU4-55P-201ENST00000410731 DSG3P32926 999 aa12.56□□□□□ -0.4
RNU4-55P-201ENST00000410731 ATF5Q9Y2D1 282 aaPredicted RBP12.53□□□□□ -0.4
RNU4-55P-201ENST00000410731 ABCB7O75027 752 aa12.46□□□□□ -0.41
RNU4-55P-201ENST00000410731 POLA2Q14181 598 aa12.36□□□□□ -0.43
RNU4-55P-201ENST00000410731 ZBTB12Q9Y330 459 aaPredicted RBP12.21□□□□□ -0.45
RNU4-55P-201ENST00000410731 FBLN2P98095 1184 aa12.05□□□□□ -0.48
RNU4-55P-201ENST00000410731 RBM42Q9BTD8 480 aaKnown RBP12.01□□□□□ -0.49
RNU4-55P-201ENST00000410731 MKRN4PQ13434 485 aaPredicted RBP12□□□□□ -0.49
RNU4-55P-201ENST00000410731 OSCARQ8IYS5 282 aa11.97□□□□□ -0.49
RNU4-55P-201ENST00000410731 SPDYE2BA6NHP3 402 aa11.84□□□□□ -0.51
RNU4-55P-201ENST00000410731 SPDYE6P0CI01 402 aa11.84□□□□□ -0.51
RNU4-55P-201ENST00000410731 SPDYE2Q495Y8 402 aa11.84□□□□□ -0.51
RNU4-55P-201ENST00000410731 AKT1S1Q96B36 256 aa11.81□□□□□ -0.52
RNU4-55P-201ENST00000410731 SSUH2Q9Y2M2 353 aa11.74□□□□□ -0.53
RNU4-55P-201ENST00000410731 ZNF692Q9BU19 519 aaPredicted RBP11.73□□□□□ -0.53
RNU4-55P-201ENST00000410731 REM2Q8IYK8 340 aaPredicted RBP11.68□□□□□ -0.54
RNU4-55P-201ENST00000410731 SPDYE4A6NLX3 237 aa11.63□□□□□ -0.55
RNU4-55P-201ENST00000410731 PABPN1Q86U42 306 aaKnown RBP eCLIP11.57□□□□□ -0.56
RNU4-55P-201ENST00000410731 PITPNM1O00562 1244 aa11.56□□□□□ -0.56
RNU4-55P-201ENST00000410731 CHRDL2Q6WN34 429 aa11.56□□□□□ -0.56
RNU4-55P-201ENST00000410731 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
RNU4-55P-201ENST00000410731 POTEHQ6S545 545 aa11.48□□□□□ -0.57
RNU4-55P-201ENST00000410731 PROM2Q8N271 834 aa11.46□□□□□ -0.57
RNU4-55P-201ENST00000410731 FKBP8Q14318 412 aa11.45□□□□□ -0.58
RNU4-55P-201ENST00000410731 CLEC11AQ9Y240 323 aa11.45□□□□□ -0.58
RNU4-55P-201ENST00000410731 FXR2P51116 673 aaKnown RBP eCLIP11.38□□□□□ -0.59
RNU4-55P-201ENST00000410731 PIP4P2Q8N4L2 257 aa11.37□□□□□ -0.59
RNU4-55P-201ENST00000410731 STAG3Q9UJ98 1225 aa11.37□□□□□ -0.59
RNU4-55P-201ENST00000410731 PRR29P0C7W0 189 aa11.33□□□□□ -0.6
RNU4-55P-201ENST00000410731 PRKAR2AP13861 404 aaKnown RBP11.25□□□□□ -0.61
RNU4-55P-201ENST00000410731 CHADLQ6NUI6 762 aa11.19□□□□□ -0.62
RNU4-55P-201ENST00000410731 CREBZFQ9NS37 354 aa11.16□□□□□ -0.62
RNU4-55P-201ENST00000410731 FBXO3Q9UK99 471 aa11.13□□□□□ -0.63
RNU4-55P-201ENST00000410731 FARP1Q9Y4F1 1045 aaPredicted RBP11.09□□□□□ -0.63
RNU4-55P-201ENST00000410731 HAX1O00165 279 aa11.03□□□□□ -0.64
RNU4-55P-201ENST00000410731 MNX1P50219 401 aaPredicted RBP11.03□□□□□ -0.64
RNU4-55P-201ENST00000410731 PLEKHG5O94827 1062 aa11.02□□□□□ -0.65
RNU4-55P-201ENST00000410731 MIER1Q8N108 512 aa11.02□□□□□ -0.65
RNU4-55P-201ENST00000410731 PLCD3Q8N3E9 789 aa11.01□□□□□ -0.65
RNU4-55P-201ENST00000410731 C19orf67A6NJJ6 358 aa11□□□□□ -0.65
RNU4-55P-201ENST00000410731 NPM1P06748 294 aaKnown RBP eCLIP10.98□□□□□ -0.65
RNU4-55P-201ENST00000410731 VASPP50552 380 aaPredicted RBP10.98□□□□□ -0.65
RNU4-55P-201ENST00000410731 ZBTB47Q9UFB7 747 aaPredicted RBP10.94□□□□□ -0.66
RNU4-55P-201ENST00000410731 CD44P16070 742 aaKnown RBP10.93□□□□□ -0.66
RNU4-55P-201ENST00000410731 EVX2Q03828 476 aa10.91□□□□□ -0.66
RNU4-55P-201ENST00000410731 SP7Q8TDD2 431 aaPredicted RBP10.89□□□□□ -0.67
RNU4-55P-201ENST00000410731 PAK3O75914 559 aaPredicted RBP10.84□□□□□ -0.67
RNU4-55P-201ENST00000410731 ZRANB1Q9UGI0 708 aa10.82□□□□□ -0.68
RNU4-55P-201ENST00000410731 NUBP1P53384 320 aa10.8□□□□□ -0.68
RNU4-55P-201ENST00000410731 KLHL34Q8N239 644 aa10.8□□□□□ -0.68
RNU4-55P-201ENST00000410731 ZNF579Q8NAF0 562 aaKnown RBP10.8□□□□□ -0.68
RNU4-55P-201ENST00000410731 IFNLR1Q8IU57 520 aaPredicted RBP10.79□□□□□ -0.68
RNU4-55P-201ENST00000410731 RASEFQ8IZ41 740 aa10.79□□□□□ -0.68
RNU4-55P-201ENST00000410731 TSPYL2Q9H2G4 693 aaPredicted RBP10.75□□□□□ -0.69
RNU4-55P-201ENST00000410731 CLCN6P51797 869 aa10.74□□□□□ -0.69
RNU4-55P-201ENST00000410731 FAM212AQ96EL1 285 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms