RNA–Protein interactions for RNA: ENST00000410299.1

RNU2-54P-201, Transcript of RNA, U2 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU2-54P, Length 190 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU2-54P-201ENST00000410299 AEBP2Q6ZN18 517 aaPredicted RBP13.52□□□□□ -0.25
RNU2-54P-201ENST00000410299 CHIC1Q5VXU3 224 aa12.98□□□□□ -0.33
RNU2-54P-201ENST00000410299 SENP3Q9H4L4 574 aaPredicted RBP11.64□□□□□ -0.55
RNU2-54P-201ENST00000410299 PHF23Q9BUL5 403 aaPredicted RBP11.42□□□□□ -0.58
RNU2-54P-201ENST00000410299 FOXD1Q16676 465 aa10.82□□□□□ -0.68
RNU2-54P-201ENST00000410299 POTEDQ86YR6 584 aa10.65□□□□□ -0.7
RNU2-54P-201ENST00000410299 PLPPR3Q6T4P5 718 aa10.44□□□□□ -0.74
RNU2-54P-201ENST00000410299 MSH5O43196 834 aa10.34□□□□□ -0.75
RNU2-54P-201ENST00000410299 PPP6R1Q9UPN7 881 aa10.16□□□□□ -0.78
RNU2-54P-201ENST00000410299 ADRA2BP18089 450 aa10.14□□□□□ -0.79
RNU2-54P-201ENST00000410299 PIAS4Q8N2W9 510 aaPredicted RBP10.11□□□□□ -0.79
RNU2-54P-201ENST00000410299 MAPK8IP2Q13387 824 aaPredicted RBP9.27□□□□□ -0.93
RNU2-54P-201ENST00000410299 SCAF1Q9H7N4 1312 aaKnown RBP9.22□□□□□ -0.93
RNU2-54P-201ENST00000410299 PPP4R3CPQ6ZMV5 832 aa9.19□□□□□ -0.94
RNU2-54P-201ENST00000410299 DMRT2Q9Y5R5 561 aa9.13□□□□□ -0.95
RNU2-54P-201ENST00000410299 CACNB1Q02641 598 aaPredicted RBP9.12□□□□□ -0.95
RNU2-54P-201ENST00000410299 CNKSR2Q8WXI2 1034 aa8.96□□□□□ -0.98
RNU2-54P-201ENST00000410299 DCAF8L1A6NGE4 600 aa8.9□□□□□ -0.98
RNU2-54P-201ENST00000410299 NCBP3Q53F19 620 aaKnown RBP8.87□□□□□ -0.99
RNU2-54P-201ENST00000410299 HOXD11P31277 338 aaPredicted RBP8.85□□□□□ -0.99
RNU2-54P-201ENST00000410299 RNF216Q9NWF9 866 aaPredicted RBP8.83□□□□□ -1
RNU2-54P-201ENST00000410299 KCNA4P22459 653 aa8.78□□□□□ -1
RNU2-54P-201ENST00000410299 NPM3O75607 178 aaKnown RBP8.77□□□□□ -1.01
RNU2-54P-201ENST00000410299 RNF39Q9H2S5 420 aa8.73□□□□□ -1.01
RNU2-54P-201ENST00000410299 C1QBPQ07021 282 aaKnown RBP8.63□□□□□ -1.03
RNU2-54P-201ENST00000410299 DNAJC5BQ9UF47 199 aa8.48□□□□□ -1.05
RNU2-54P-201ENST00000410299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.45□□□□□ -1.06
RNU2-54P-201ENST00000410299 SLC4A2P04920 1241 aa8.34□□□□□ -1.07
RNU2-54P-201ENST00000410299 POTEHQ6S545 545 aa8.31□□□□□ -1.08
RNU2-54P-201ENST00000410299 SLC4A1APQ9BWU0 796 aaKnown RBP8.31□□□□□ -1.08
RNU2-54P-201ENST00000410299 U3KPZ7 1027 aaPredicted RBP8.3□□□□□ -1.08
RNU2-54P-201ENST00000410299 SPINK5Q9NQ38 1064 aaPredicted RBP8.14□□□□□ -1.11
RNU2-54P-201ENST00000410299 CAPN15O75808 1086 aa8.12□□□□□ -1.11
RNU2-54P-201ENST00000410299 FOXD4L1Q9NU39 408 aa8.1□□□□□ -1.11
RNU2-54P-201ENST00000410299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.08□□□□□ -1.12
RNU2-54P-201ENST00000410299 ZBTB22O15209 634 aa8.08□□□□□ -1.12
RNU2-54P-201ENST00000410299 MYCNP04198 464 aaPredicted RBP8.08□□□□□ -1.12
RNU2-54P-201ENST00000410299 HNRNPUL2Q1KMD3 747 aaKnown RBP8.08□□□□□ -1.12
RNU2-54P-201ENST00000410299 DSG3P32926 999 aa8.06□□□□□ -1.12
RNU2-54P-201ENST00000410299 SAMD1Q6SPF0 538 aaPredicted RBP8.06□□□□□ -1.12
RNU2-54P-201ENST00000410299 TRHP20396 242 aaPredicted RBP8.03□□□□□ -1.12
RNU2-54P-201ENST00000410299 APLP2Q06481 763 aa8.03□□□□□ -1.12
RNU2-54P-201ENST00000410299 ZNF219Q9P2Y4 722 aaPredicted RBP7.98□□□□□ -1.13
RNU2-54P-201ENST00000410299 ABCB7O75027 752 aa7.95□□□□□ -1.14
RNU2-54P-201ENST00000410299 ATF5Q9Y2D1 282 aaPredicted RBP7.93□□□□□ -1.14
RNU2-54P-201ENST00000410299 EHMT2Q96KQ7 1210 aa7.87□□□□□ -1.15
RNU2-54P-201ENST00000410299 CSRNP3Q8WYN3 585 aa7.86□□□□□ -1.15
RNU2-54P-201ENST00000410299 POLA2Q14181 598 aa7.85□□□□□ -1.15
RNU2-54P-201ENST00000410299 ATXN8OSP0DMR3 200 aa7.82□□□□□ -1.16
RNU2-54P-201ENST00000410299 RBM42Q9BTD8 480 aaKnown RBP7.79□□□□□ -1.16
RNU2-54P-201ENST00000410299 CHRDL2Q6WN34 429 aa7.72□□□□□ -1.17
RNU2-54P-201ENST00000410299 ZBTB12Q9Y330 459 aaPredicted RBP7.65□□□□□ -1.18
RNU2-54P-201ENST00000410299 SP7Q8TDD2 431 aaPredicted RBP7.62□□□□□ -1.19
RNU2-54P-201ENST00000410299 OSCARQ8IYS5 282 aa7.6□□□□□ -1.19
RNU2-54P-201ENST00000410299 FBLN2P98095 1184 aa7.56□□□□□ -1.2
RNU2-54P-201ENST00000410299 MKRN4PQ13434 485 aaPredicted RBP7.56□□□□□ -1.2
RNU2-54P-201ENST00000410299 AKT1S1Q96B36 256 aa7.49□□□□□ -1.21
RNU2-54P-201ENST00000410299 HAX1O00165 279 aa7.47□□□□□ -1.21
RNU2-54P-201ENST00000410299 SPDYE2BA6NHP3 402 aa7.45□□□□□ -1.22
RNU2-54P-201ENST00000410299 SPDYE6P0CI01 402 aa7.45□□□□□ -1.22
RNU2-54P-201ENST00000410299 SPDYE2Q495Y8 402 aa7.45□□□□□ -1.22
RNU2-54P-201ENST00000410299 REM2Q8IYK8 340 aaPredicted RBP7.44□□□□□ -1.22
RNU2-54P-201ENST00000410299 PIP4P2Q8N4L2 257 aa7.43□□□□□ -1.22
RNU2-54P-201ENST00000410299 ZNF692Q9BU19 519 aaPredicted RBP7.41□□□□□ -1.22
RNU2-54P-201ENST00000410299 SSUH2Q9Y2M2 353 aa7.38□□□□□ -1.23
RNU2-54P-201ENST00000410299 PITPNM1O00562 1244 aa7.35□□□□□ -1.23
RNU2-54P-201ENST00000410299 PABPN1Q86U42 306 aaKnown RBP eCLIP7.32□□□□□ -1.24
RNU2-54P-201ENST00000410299 FXR2P51116 673 aaKnown RBP eCLIP7.31□□□□□ -1.24
RNU2-54P-201ENST00000410299 CLEC11AQ9Y240 323 aa7.29□□□□□ -1.24
RNU2-54P-201ENST00000410299 SPDYE4A6NLX3 237 aa7.28□□□□□ -1.24
RNU2-54P-201ENST00000410299 SPDYE1Q8NFV5 336 aaPredicted RBP7.28□□□□□ -1.24
RNU2-54P-201ENST00000410299 EVX2Q03828 476 aa7.22□□□□□ -1.25
RNU2-54P-201ENST00000410299 PRR29P0C7W0 189 aa7.18□□□□□ -1.26
RNU2-54P-201ENST00000410299 PRKAR2AP13861 404 aaKnown RBP7.17□□□□□ -1.26
RNU2-54P-201ENST00000410299 LHX8Q68G74 356 aa7.16□□□□□ -1.26
RNU2-54P-201ENST00000410299 CHADLQ6NUI6 762 aa7.14□□□□□ -1.27
RNU2-54P-201ENST00000410299 FKBP8Q14318 412 aa7.12□□□□□ -1.27
RNU2-54P-201ENST00000410299 PROM2Q8N271 834 aa7.12□□□□□ -1.27
RNU2-54P-201ENST00000410299 STAG3Q9UJ98 1225 aa7.11□□□□□ -1.27
RNU2-54P-201ENST00000410299 C19orf67A6NJJ6 358 aa7.09□□□□□ -1.27
RNU2-54P-201ENST00000410299 GABBR2O75899 941 aa7.09□□□□□ -1.27
RNU2-54P-201ENST00000410299 PLSCR2Q9NRY7 297 aa7.07□□□□□ -1.28
RNU2-54P-201ENST00000410299 CREBZFQ9NS37 354 aa7.05□□□□□ -1.28
RNU2-54P-201ENST00000410299 FARP1Q9Y4F1 1045 aaPredicted RBP7.03□□□□□ -1.28
RNU2-54P-201ENST00000410299 MNX1P50219 401 aaPredicted RBP6.95□□□□□ -1.3
RNU2-54P-201ENST00000410299 CD44P16070 742 aaKnown RBP6.94□□□□□ -1.3
RNU2-54P-201ENST00000410299 MIER1Q8N108 512 aa6.94□□□□□ -1.3
RNU2-54P-201ENST00000410299 CLCN6P51797 869 aa6.91□□□□□ -1.3
RNU2-54P-201ENST00000410299 DCBLD2Q96PD2 775 aa6.91□□□□□ -1.3
RNU2-54P-201ENST00000410299 NPM1P06748 294 aaKnown RBP eCLIP6.9□□□□□ -1.3
RNU2-54P-201ENST00000410299 PLCD3Q8N3E9 789 aa6.9□□□□□ -1.3
RNU2-54P-201ENST00000410299 POTEIP0CG38 1075 aa6.88□□□□□ -1.31
RNU2-54P-201ENST00000410299 ZRANB1Q9UGI0 708 aa6.88□□□□□ -1.31
RNU2-54P-201ENST00000410299 FBXO3Q9UK99 471 aa6.88□□□□□ -1.31
RNU2-54P-201ENST00000410299 PLEKHG5O94827 1062 aa6.87□□□□□ -1.31
RNU2-54P-201ENST00000410299 PAK3O75914 559 aaPredicted RBP6.83□□□□□ -1.32
RNU2-54P-201ENST00000410299 ZNF579Q8NAF0 562 aaKnown RBP6.83□□□□□ -1.32
RNU2-54P-201ENST00000410299 PHF12Q96QT6 1004 aa6.82□□□□□ -1.32
RNU2-54P-201ENST00000410299 TSPYL2Q9H2G4 693 aaPredicted RBP6.82□□□□□ -1.32
RNU2-54P-201ENST00000410299 VASPP50552 380 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms