RNA–Protein interactions for RNA: ENST00000410016.5

HOXD3-202, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HOXD3, Length 2,384 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-202ENST00000410016 NISCHQ9Y2I1 1504 aa33.3■■■□□ 2.92
HOXD3-202ENST00000410016 CCDC180Q9P1Z9 1646 aa28.32■■■□□ 2.12
HOXD3-202ENST00000410016 SHROOM4Q9ULL8 1493 aa28.18■■■□□ 2.1
HOXD3-202ENST00000410016 ZCCHC6Q5VYS8 1495 aaKnown RBP28.16■■■□□ 2.1
HOXD3-202ENST00000410016 SUPT5HO00267 1087 aaKnown RBP27.63■■■□□ 2.01
HOXD3-202ENST00000410016 DCAF8L2P0C7V8 631 aa27.46■■□□□ 1.99
HOXD3-202ENST00000410016 DCAF1Q9Y4B6 1507 aa27.4■■□□□ 1.98
HOXD3-202ENST00000410016 CHIC1Q5VXU3 224 aa26.94■■□□□ 1.9
HOXD3-202ENST00000410016 MYO15BQ96JP2 1530 aa26.77■■□□□ 1.88
HOXD3-202ENST00000410016 ABCC9O60706 1549 aa26.52■■□□□ 1.84
HOXD3-202ENST00000410016 SCRIBQ14160 1630 aa26.44■■□□□ 1.82
HOXD3-202ENST00000410016 RSF1Q96T23 1441 aaPredicted RBP26.34■■□□□ 1.81
HOXD3-202ENST00000410016 NACADO15069 1562 aa26.23■■□□□ 1.79
HOXD3-202ENST00000410016 LOC105371045A0A1W2PR82 267 aa26.09■■□□□ 1.77
HOXD3-202ENST00000410016 RB1CC1Q8TDY2 1594 aa26.01■■□□□ 1.75
HOXD3-202ENST00000410016 HRCP23327 699 aa25.97■■□□□ 1.75
HOXD3-202ENST00000410016 CECR2Q9BXF3 1484 aa25.95■■□□□ 1.75
HOXD3-202ENST00000410016 PCGF6Q9BYE7 350 aa25.95■■□□□ 1.74
HOXD3-202ENST00000410016 MROH2BQ7Z745 1585 aa25.86■■□□□ 1.73
HOXD3-202ENST00000410016 TRIM41Q8WV44 630 aa25.8■■□□□ 1.72
HOXD3-202ENST00000410016 WIZO95785 1651 aa25.67■■□□□ 1.7
HOXD3-202ENST00000410016 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
HOXD3-202ENST00000410016 TRIM26Q12899 539 aaPredicted RBP25.54■■□□□ 1.68
HOXD3-202ENST00000410016 FAM9AQ8IZU1 332 aaPredicted RBP25.49■■□□□ 1.67
HOXD3-202ENST00000410016 EIF4G1Q04637 1599 aaKnown RBP25.37■■□□□ 1.65
HOXD3-202ENST00000410016 PPARGC1BQ86YN6 1023 aaKnown RBP25.36■■□□□ 1.65
HOXD3-202ENST00000410016 UNC13AQ9UPW8 1703 aa25.34■■□□□ 1.65
HOXD3-202ENST00000410016 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
HOXD3-202ENST00000410016 TOP2AP11388 1531 aaKnown RBP25.31■■□□□ 1.64
HOXD3-202ENST00000410016 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
HOXD3-202ENST00000410016 EHMT2Q96KQ7 1210 aa25.2■■□□□ 1.62
HOXD3-202ENST00000410016 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
HOXD3-202ENST00000410016 BICRAQ9NZM4 1560 aa25.11■■□□□ 1.61
HOXD3-202ENST00000410016 PABPN1Q86U42 306 aaKnown RBP eCLIP25.06■■□□□ 1.6
HOXD3-202ENST00000410016 ABCC8Q09428 1581 aa25.06■■□□□ 1.6
HOXD3-202ENST00000410016 ZEB1P37275 1124 aaPredicted RBP24.95■■□□□ 1.58
HOXD3-202ENST00000410016 PEG3Q9GZU2 1588 aa24.94■■□□□ 1.58
HOXD3-202ENST00000410016 SOGA1O94964 1423 aa24.86■■□□□ 1.57
HOXD3-202ENST00000410016 EEA1Q15075 1411 aa24.77■■□□□ 1.56
HOXD3-202ENST00000410016 ATAD2BQ9ULI0 1458 aa24.74■■□□□ 1.55
HOXD3-202ENST00000410016 CSRNP3Q8WYN3 585 aa24.74■■□□□ 1.55
HOXD3-202ENST00000410016 RUSC2Q8N2Y8 1516 aa24.74■■□□□ 1.55
HOXD3-202ENST00000410016 WRNQ14191 1432 aaPredicted RBP eCLIP24.73■■□□□ 1.55
HOXD3-202ENST00000410016 TNIKQ9UKE5 1360 aa24.73■■□□□ 1.55
HOXD3-202ENST00000410016 CEP162Q5TB80 1403 aa24.7■■□□□ 1.55
HOXD3-202ENST00000410016 BAZ1BQ9UIG0 1483 aaKnown RBP24.62■■□□□ 1.53
HOXD3-202ENST00000410016 SYNJ1O43426 1573 aa24.56■■□□□ 1.52
HOXD3-202ENST00000410016 UBTFP17480 764 aaKnown RBP24.55■■□□□ 1.52
HOXD3-202ENST00000410016 GOLGA3Q08378 1498 aa24.54■■□□□ 1.52
HOXD3-202ENST00000410016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.47■■□□□ 1.51
HOXD3-202ENST00000410016 CEP164Q9UPV0 1460 aa24.43■■□□□ 1.5
HOXD3-202ENST00000410016 KIF21BO75037 1637 aa24.4■■□□□ 1.5
HOXD3-202ENST00000410016 CCER1Q8TC90 406 aaPredicted RBP24.39■■□□□ 1.49
HOXD3-202ENST00000410016 TTBK1Q5TCY1 1321 aaPredicted RBP24.38■■□□□ 1.49
HOXD3-202ENST00000410016 NCAPD3P42695 1498 aa24.31■■□□□ 1.48
HOXD3-202ENST00000410016 TOP2BQ02880 1626 aa24.3■■□□□ 1.48
HOXD3-202ENST00000410016 CLIP1P30622 1438 aa24.26■■□□□ 1.47
HOXD3-202ENST00000410016 RAPGEF2Q9Y4G8 1499 aa24.26■■□□□ 1.47
HOXD3-202ENST00000410016 HMGXB3Q12766 1538 aa24.26■■□□□ 1.47
HOXD3-202ENST00000410016 BIVM-ERCC5R4GMW8 1640 aa24.2■■□□□ 1.47
HOXD3-202ENST00000410016 VPS8Q8N3P4 1428 aa24.17■■□□□ 1.46
HOXD3-202ENST00000410016 PRXQ9BXM0 1461 aa24.09■■□□□ 1.45
HOXD3-202ENST00000410016 CFTRP13569 1480 aa24.08■■□□□ 1.45
HOXD3-202ENST00000410016 CUX1P39880 1505 aa24.08■■□□□ 1.44
HOXD3-202ENST00000410016 ERICH3Q5RHP9 1530 aa24.04■■□□□ 1.44
HOXD3-202ENST00000410016 RANGAP1P46060 587 aaPredicted RBP23.98■■□□□ 1.43
HOXD3-202ENST00000410016 APLP2Q06481 763 aa23.97■■□□□ 1.43
HOXD3-202ENST00000410016 KIF27Q86VH2 1401 aa23.95■■□□□ 1.42
HOXD3-202ENST00000410016 HNRNPUL2Q1KMD3 747 aaKnown RBP23.94■■□□□ 1.42
HOXD3-202ENST00000410016 DIEXFQ68CQ4 756 aaKnown RBP23.9■■□□□ 1.42
HOXD3-202ENST00000410016 ARAP1Q96P48 1450 aa23.9■■□□□ 1.42
HOXD3-202ENST00000410016 PELP1Q8IZL8 1130 aaKnown RBP23.88■■□□□ 1.41
HOXD3-202ENST00000410016 SCAF1Q9H7N4 1312 aaKnown RBP23.83■■□□□ 1.41
HOXD3-202ENST00000410016 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
HOXD3-202ENST00000410016 PRDM2Q13029 1718 aa23.78■■□□□ 1.4
HOXD3-202ENST00000410016 ZNF316A6NFI3 1004 aaPredicted RBP23.78■■□□□ 1.4
HOXD3-202ENST00000410016 KANK4Q5T7N3 995 aaPredicted RBP23.76■■□□□ 1.39
HOXD3-202ENST00000410016 IGF1RP08069 1367 aa23.75■■□□□ 1.39
HOXD3-202ENST00000410016 ARHGAP35Q9NRY4 1499 aa23.72■■□□□ 1.39
HOXD3-202ENST00000410016 CUX2O14529 1486 aa23.7■■□□□ 1.39
HOXD3-202ENST00000410016 ACIN1Q9UKV3 1341 aaKnown RBP23.66■■□□□ 1.38
HOXD3-202ENST00000410016 FGD5Q6ZNL6 1462 aa23.64■■□□□ 1.37
HOXD3-202ENST00000410016 RRBP1Q9P2E9 1410 aaKnown RBP23.63■■□□□ 1.37
HOXD3-202ENST00000410016 NEUROD1Q13562 356 aa23.63■■□□□ 1.37
HOXD3-202ENST00000410016 CC2D2AQ9P2K1 1620 aa23.63■■□□□ 1.37
HOXD3-202ENST00000410016 CARMIL1Q5VZK9 1371 aa23.61■■□□□ 1.37
HOXD3-202ENST00000410016 CLSPNQ9HAW4 1339 aa23.58■■□□□ 1.37
HOXD3-202ENST00000410016 DHX57Q6P158 1386 aaKnown RBP23.56■■□□□ 1.36
HOXD3-202ENST00000410016 FANCD2Q9BXW9 1451 aa23.54■■□□□ 1.36
HOXD3-202ENST00000410016 CCNB3Q8WWL7 1395 aa23.5■■□□□ 1.35
HOXD3-202ENST00000410016 CENPBP07199 599 aaPredicted RBP23.5■■□□□ 1.35
HOXD3-202ENST00000410016 MAP3K1Q13233 1512 aa23.47■■□□□ 1.35
HOXD3-202ENST00000410016 DNMBPQ6XZF7 1577 aa23.42■■□□□ 1.34
HOXD3-202ENST00000410016 TIAM1Q13009 1591 aa23.42■■□□□ 1.34
HOXD3-202ENST00000410016 MIER1Q8N108 512 aa23.41■■□□□ 1.34
HOXD3-202ENST00000410016 ABCA10Q8WWZ4 1543 aa23.41■■□□□ 1.34
HOXD3-202ENST00000410016 MYT1Q01538 1121 aa23.41■■□□□ 1.34
HOXD3-202ENST00000410016 RAD54L2Q9Y4B4 1467 aa23.4■■□□□ 1.34
HOXD3-202ENST00000410016 TOPBP1Q92547 1522 aa23.39■■□□□ 1.33
HOXD3-202ENST00000410016 POLA1P09884 1462 aaPredicted RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms