RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-205ENST00000409952 AEBP2Q6ZN18 517 aaPredicted RBP22.19■■□□□ 1.14
LSM5-205ENST00000409952 CHIC1Q5VXU3 224 aa21.2■□□□□ 0.98
LSM5-205ENST00000409952 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
LSM5-205ENST00000409952 SENP3Q9H4L4 574 aaPredicted RBP18.66■□□□□ 0.58
LSM5-205ENST00000409952 FOXD1Q16676 465 aa17.52■□□□□ 0.4
LSM5-205ENST00000409952 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
LSM5-205ENST00000409952 PLPPR3Q6T4P5 718 aa17.11■□□□□ 0.33
LSM5-205ENST00000409952 PPP6R1Q9UPN7 881 aa16.66■□□□□ 0.26
LSM5-205ENST00000409952 ADRA2BP18089 450 aa16.55■□□□□ 0.24
LSM5-205ENST00000409952 MSH5O43196 834 aa16.46■□□□□ 0.23
LSM5-205ENST00000409952 PIAS4Q8N2W9 510 aaPredicted RBP16.32■□□□□ 0.2
LSM5-205ENST00000409952 MAPK8IP2Q13387 824 aaPredicted RBP15.19■□□□□ 0.02
LSM5-205ENST00000409952 PPP4R3CPQ6ZMV5 832 aa15.06■□□□□ 0
LSM5-205ENST00000409952 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
LSM5-205ENST00000409952 DMRT2Q9Y5R5 561 aa14.9□□□□□ -0.02
LSM5-205ENST00000409952 CNKSR2Q8WXI2 1034 aa14.68□□□□□ -0.06
LSM5-205ENST00000409952 CACNB1Q02641 598 aaPredicted RBP14.6□□□□□ -0.07
LSM5-205ENST00000409952 NCBP3Q53F19 620 aaKnown RBP14.6□□□□□ -0.07
LSM5-205ENST00000409952 KCNA4P22459 653 aa14.55□□□□□ -0.08
LSM5-205ENST00000409952 HOXD11P31277 338 aaPredicted RBP14.47□□□□□ -0.09
LSM5-205ENST00000409952 RNF216Q9NWF9 866 aaPredicted RBP14.46□□□□□ -0.09
LSM5-205ENST00000409952 NPM3O75607 178 aaKnown RBP14.43□□□□□ -0.1
LSM5-205ENST00000409952 DNAJC5BQ9UF47 199 aa14.22□□□□□ -0.13
LSM5-205ENST00000409952 DCAF8L1A6NGE4 600 aa14.2□□□□□ -0.14
LSM5-205ENST00000409952 RNF39Q9H2S5 420 aa13.93□□□□□ -0.18
LSM5-205ENST00000409952 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
LSM5-205ENST00000409952 C1QBPQ07021 282 aaKnown RBP13.72□□□□□ -0.21
LSM5-205ENST00000409952 SLC4A2P04920 1241 aa13.7□□□□□ -0.22
LSM5-205ENST00000409952 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.69□□□□□ -0.223e-13■■■□□ 16
LSM5-205ENST00000409952 U3KPZ7 1027 aaPredicted RBP13.55□□□□□ -0.24
LSM5-205ENST00000409952 POTEHQ6S545 545 aa13.44□□□□□ -0.26
LSM5-205ENST00000409952 ZBTB22O15209 634 aa13.43□□□□□ -0.26
LSM5-205ENST00000409952 FOXD4L1Q9NU39 408 aa13.43□□□□□ -0.26
LSM5-205ENST00000409952 MYCNP04198 464 aaPredicted RBP13.32□□□□□ -0.28
LSM5-205ENST00000409952 SPINK5Q9NQ38 1064 aaPredicted RBP13.31□□□□□ -0.28
LSM5-205ENST00000409952 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.25□□□□□ -0.29
LSM5-205ENST00000409952 HNRNPUL2Q1KMD3 747 aaKnown RBP13.25□□□□□ -0.29
LSM5-205ENST00000409952 CSRNP3Q8WYN3 585 aa13.22□□□□□ -0.29
LSM5-205ENST00000409952 SAMD1Q6SPF0 538 aaPredicted RBP13.2□□□□□ -0.3
LSM5-205ENST00000409952 EHMT2Q96KQ7 1210 aa13.17□□□□□ -0.3
LSM5-205ENST00000409952 CAPN15O75808 1086 aa13.14□□□□□ -0.31
LSM5-205ENST00000409952 APLP2Q06481 763 aa13.12□□□□□ -0.31
LSM5-205ENST00000409952 DSG3P32926 999 aa13.11□□□□□ -0.31
LSM5-205ENST00000409952 ATXN8OSP0DMR3 200 aa13.04□□□□□ -0.32
LSM5-205ENST00000409952 TRHP20396 242 aaPredicted RBP13.02□□□□□ -0.33
LSM5-205ENST00000409952 ATF5Q9Y2D1 282 aaPredicted RBP12.98□□□□□ -0.33
LSM5-205ENST00000409952 ZNF219Q9P2Y4 722 aaPredicted RBP12.97□□□□□ -0.33
LSM5-205ENST00000409952 ABCB7O75027 752 aa12.93□□□□□ -0.34
LSM5-205ENST00000409952 POLA2Q14181 598 aa12.76□□□□□ -0.37
LSM5-205ENST00000409952 ZBTB12Q9Y330 459 aaPredicted RBP12.53□□□□□ -0.4
LSM5-205ENST00000409952 MKRN4PQ13434 485 aaPredicted RBP12.45□□□□□ -0.42
LSM5-205ENST00000409952 FBLN2P98095 1184 aa12.38□□□□□ -0.43
LSM5-205ENST00000409952 OSCARQ8IYS5 282 aa12.33□□□□□ -0.44
LSM5-205ENST00000409952 RBM42Q9BTD8 480 aaKnown RBP12.31□□□□□ -0.44
LSM5-205ENST00000409952 CHRDL2Q6WN34 429 aa12.29□□□□□ -0.44
LSM5-205ENST00000409952 SP7Q8TDD2 431 aaPredicted RBP12.25□□□□□ -0.45
LSM5-205ENST00000409952 SPDYE2BA6NHP3 402 aa12.2□□□□□ -0.46
LSM5-205ENST00000409952 SPDYE6P0CI01 402 aa12.2□□□□□ -0.46
LSM5-205ENST00000409952 SPDYE2Q495Y8 402 aa12.2□□□□□ -0.46
LSM5-205ENST00000409952 AKT1S1Q96B36 256 aa12.16□□□□□ -0.46
LSM5-205ENST00000409952 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
LSM5-205ENST00000409952 REM2Q8IYK8 340 aaPredicted RBP12.12□□□□□ -0.47
LSM5-205ENST00000409952 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
LSM5-205ENST00000409952 SPDYE4A6NLX3 237 aa12.02□□□□□ -0.49
LSM5-205ENST00000409952 PITPNM1O00562 1244 aa11.99□□□□□ -0.49
LSM5-205ENST00000409952 PROM2Q8N271 834 aa11.96□□□□□ -0.49
LSM5-205ENST00000409952 PABPN1Q86U42 306 aaKnown RBP eCLIP11.92□□□□□ -0.5
LSM5-205ENST00000409952 PIP4P2Q8N4L2 257 aa11.89□□□□□ -0.51
LSM5-205ENST00000409952 FKBP8Q14318 412 aa11.87□□□□□ -0.51
LSM5-205ENST00000409952 HAX1O00165 279 aa11.86□□□□□ -0.51
LSM5-205ENST00000409952 FXR2P51116 673 aaKnown RBP eCLIP11.86□□□□□ -0.51
LSM5-205ENST00000409952 SPDYE1Q8NFV5 336 aaPredicted RBP11.84□□□□□ -0.51
LSM5-205ENST00000409952 CLEC11AQ9Y240 323 aa11.78□□□□□ -0.52
LSM5-205ENST00000409952 STAG3Q9UJ98 1225 aa11.72□□□□□ -0.53
LSM5-205ENST00000409952 PRKAR2AP13861 404 aaKnown RBP11.65□□□□□ -0.54
LSM5-205ENST00000409952 CHADLQ6NUI6 762 aa11.64□□□□□ -0.55
LSM5-205ENST00000409952 PRR29P0C7W0 189 aa11.63□□□□□ -0.55
LSM5-205ENST00000409952 EVX2Q03828 476 aa11.63□□□□□ -0.55
LSM5-205ENST00000409952 SLC24A1O60721 1099 aa11.61□□□□□ -0.55
LSM5-205ENST00000409952 CREBZFQ9NS37 354 aa11.53□□□□□ -0.56
LSM5-205ENST00000409952 FBXO3Q9UK99 471 aa11.52□□□□□ -0.57
LSM5-205ENST00000409952 LHX8Q68G74 356 aa11.48□□□□□ -0.57
LSM5-205ENST00000409952 C19orf67A6NJJ6 358 aa11.46□□□□□ -0.57
LSM5-205ENST00000409952 MNX1P50219 401 aaPredicted RBP11.45□□□□□ -0.58
LSM5-205ENST00000409952 PLSCR2Q9NRY7 297 aa11.45□□□□□ -0.58
LSM5-205ENST00000409952 FARP1Q9Y4F1 1045 aaPredicted RBP11.43□□□□□ -0.58
LSM5-205ENST00000409952 VASPP50552 380 aaPredicted RBP11.38□□□□□ -0.59
LSM5-205ENST00000409952 MIER1Q8N108 512 aa11.37□□□□□ -0.59
LSM5-205ENST00000409952 PLCD3Q8N3E9 789 aa11.32□□□□□ -0.6
LSM5-205ENST00000409952 GABBR2O75899 941 aa11.3□□□□□ -0.6
LSM5-205ENST00000409952 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
LSM5-205ENST00000409952 AMER1Q5JTC6 1135 aaPredicted RBP11.29□□□□□ -0.6
LSM5-205ENST00000409952 NPM1P06748 294 aaKnown RBP eCLIP11.27□□□□□ -0.61
LSM5-205ENST00000409952 CD44P16070 742 aaKnown RBP11.27□□□□□ -0.61
LSM5-205ENST00000409952 RTN4Q9NQC3 1192 aaKnown RBP11.27□□□□□ -0.61
LSM5-205ENST00000409952 ZBTB47Q9UFB7 747 aaPredicted RBP11.26□□□□□ -0.61
LSM5-205ENST00000409952 IFNLR1Q8IU57 520 aaPredicted RBP11.24□□□□□ -0.61
LSM5-205ENST00000409952 NUBP1P53384 320 aa11.21□□□□□ -0.61
LSM5-205ENST00000409952 ZRANB1Q9UGI0 708 aa11.16□□□□□ -0.62
LSM5-205ENST00000409952 RASEFQ8IZ41 740 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms