RNA–Protein interactions for RNA: ENST00000409782.5

LSM5-203, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 5 BASIC

Gene LSM5, Length 649 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-203ENST00000409782 AEBP2Q6ZN18 517 aaPredicted RBP25.24■■□□□ 1.63
LSM5-203ENST00000409782 CHIC1Q5VXU3 224 aa24.7■■□□□ 1.54
LSM5-203ENST00000409782 PHF23Q9BUL5 403 aaPredicted RBP21.66■■□□□ 1.06
LSM5-203ENST00000409782 SENP3Q9H4L4 574 aaPredicted RBP21.52■■□□□ 1.04
LSM5-203ENST00000409782 PLPPR3Q6T4P5 718 aa20.1■□□□□ 0.81
LSM5-203ENST00000409782 FOXD1Q16676 465 aa19.92■□□□□ 0.78
LSM5-203ENST00000409782 ADRA2BP18089 450 aa19.14■□□□□ 0.65
LSM5-203ENST00000409782 PPP6R1Q9UPN7 881 aa19.13■□□□□ 0.65
LSM5-203ENST00000409782 PIAS4Q8N2W9 510 aaPredicted RBP18.83■□□□□ 0.6
LSM5-203ENST00000409782 MSH5O43196 834 aa18.45■□□□□ 0.54
LSM5-203ENST00000409782 PPP4R3CPQ6ZMV5 832 aa17.68■□□□□ 0.42
LSM5-203ENST00000409782 SCAF1Q9H7N4 1312 aaKnown RBP17.63■□□□□ 0.41
LSM5-203ENST00000409782 MAPK8IP2Q13387 824 aaPredicted RBP17.36■□□□□ 0.37
LSM5-203ENST00000409782 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
LSM5-203ENST00000409782 NCBP3Q53F19 620 aaKnown RBP17.29■□□□□ 0.36
LSM5-203ENST00000409782 KCNA4P22459 653 aa17.22■□□□□ 0.35
LSM5-203ENST00000409782 CNKSR2Q8WXI2 1034 aa17.21■□□□□ 0.35
LSM5-203ENST00000409782 DMRT2Q9Y5R5 561 aa17.14■□□□□ 0.33
LSM5-203ENST00000409782 NPM3O75607 178 aaKnown RBP16.94■□□□□ 0.3
LSM5-203ENST00000409782 RNF216Q9NWF9 866 aaPredicted RBP16.87■□□□□ 0.29
LSM5-203ENST00000409782 HOXD11P31277 338 aaPredicted RBP16.78■□□□□ 0.28
LSM5-203ENST00000409782 DCAF8L1A6NGE4 600 aa16.47■□□□□ 0.23
LSM5-203ENST00000409782 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
LSM5-203ENST00000409782 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
LSM5-203ENST00000409782 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.163e-13■■■□□ 16
LSM5-203ENST00000409782 EHMT2Q96KQ7 1210 aa15.99■□□□□ 0.15
LSM5-203ENST00000409782 SLC4A2P04920 1241 aa15.97■□□□□ 0.15
LSM5-203ENST00000409782 FOXD4L1Q9NU39 408 aa15.89■□□□□ 0.13
LSM5-203ENST00000409782 ZBTB22O15209 634 aa15.81■□□□□ 0.12
LSM5-203ENST00000409782 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
LSM5-203ENST00000409782 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
LSM5-203ENST00000409782 U3KPZ7 1027 aaPredicted RBP15.72■□□□□ 0.11
LSM5-203ENST00000409782 MYCNP04198 464 aaPredicted RBP15.69■□□□□ 0.1
LSM5-203ENST00000409782 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.63■□□□□ 0.09
LSM5-203ENST00000409782 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
LSM5-203ENST00000409782 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
LSM5-203ENST00000409782 SAMD1Q6SPF0 538 aaPredicted RBP15.55■□□□□ 0.08
LSM5-203ENST00000409782 APLP2Q06481 763 aa15.49■□□□□ 0.07
LSM5-203ENST00000409782 CACNB1Q02641 598 aaPredicted RBP15.41■□□□□ 0.06
LSM5-203ENST00000409782 ATXN8OSP0DMR3 200 aa15.36■□□□□ 0.05
LSM5-203ENST00000409782 CAPN15O75808 1086 aa15.29■□□□□ 0.04
LSM5-203ENST00000409782 SPINK5Q9NQ38 1064 aaPredicted RBP15.28■□□□□ 0.04
LSM5-203ENST00000409782 ZNF219Q9P2Y4 722 aaPredicted RBP15.22■□□□□ 0.03
LSM5-203ENST00000409782 TRHP20396 242 aaPredicted RBP15.21■□□□□ 0.03
LSM5-203ENST00000409782 ATF5Q9Y2D1 282 aaPredicted RBP15.2■□□□□ 0.02
LSM5-203ENST00000409782 DSG3P32926 999 aa14.98□□□□□ -0.01
LSM5-203ENST00000409782 ABCB7O75027 752 aa14.96□□□□□ -0.01
LSM5-203ENST00000409782 POLA2Q14181 598 aa14.95□□□□□ -0.02
LSM5-203ENST00000409782 ZBTB12Q9Y330 459 aaPredicted RBP14.75□□□□□ -0.05
LSM5-203ENST00000409782 FBLN2P98095 1184 aa14.69□□□□□ -0.06
LSM5-203ENST00000409782 MKRN4PQ13434 485 aaPredicted RBP14.54□□□□□ -0.08
LSM5-203ENST00000409782 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
LSM5-203ENST00000409782 NISCHQ9Y2I1 1504 aa14.41□□□□□ -0.1
LSM5-203ENST00000409782 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
LSM5-203ENST00000409782 AMER1Q5JTC6 1135 aaPredicted RBP14.33□□□□□ -0.12
LSM5-203ENST00000409782 SPDYE2BA6NHP3 402 aa14.32□□□□□ -0.12
LSM5-203ENST00000409782 SPDYE6P0CI01 402 aa14.32□□□□□ -0.12
LSM5-203ENST00000409782 SPDYE2Q495Y8 402 aa14.32□□□□□ -0.12
LSM5-203ENST00000409782 SPDYE4A6NLX3 237 aa14.28□□□□□ -0.12
LSM5-203ENST00000409782 SLC24A1O60721 1099 aa14.27□□□□□ -0.13
LSM5-203ENST00000409782 FKBP8Q14318 412 aa14.27□□□□□ -0.13
LSM5-203ENST00000409782 ZNF692Q9BU19 519 aaPredicted RBP14.27□□□□□ -0.13
LSM5-203ENST00000409782 RTN4Q9NQC3 1192 aaKnown RBP14.19□□□□□ -0.14
LSM5-203ENST00000409782 SSUH2Q9Y2M2 353 aa14.16□□□□□ -0.14
LSM5-203ENST00000409782 AKT1S1Q96B36 256 aa14.14□□□□□ -0.15
LSM5-203ENST00000409782 PABPN1Q86U42 306 aaKnown RBP eCLIP14.06□□□□□ -0.16
LSM5-203ENST00000409782 REM2Q8IYK8 340 aaPredicted RBP13.99□□□□□ -0.17
LSM5-203ENST00000409782 PROM2Q8N271 834 aa13.99□□□□□ -0.17
LSM5-203ENST00000409782 SPDYE1Q8NFV5 336 aaPredicted RBP13.91□□□□□ -0.18
LSM5-203ENST00000409782 STAG3Q9UJ98 1225 aa13.88□□□□□ -0.19
LSM5-203ENST00000409782 CLEC11AQ9Y240 323 aa13.85□□□□□ -0.19
LSM5-203ENST00000409782 FBXO3Q9UK99 471 aa13.84□□□□□ -0.19
LSM5-203ENST00000409782 PITPNM1O00562 1244 aa13.81□□□□□ -0.2
LSM5-203ENST00000409782 PRR29P0C7W0 189 aa13.73□□□□□ -0.21
LSM5-203ENST00000409782 CHRDL2Q6WN34 429 aa13.73□□□□□ -0.21
LSM5-203ENST00000409782 PLEKHG5O94827 1062 aa13.58□□□□□ -0.24
LSM5-203ENST00000409782 VASPP50552 380 aaPredicted RBP13.58□□□□□ -0.24
LSM5-203ENST00000409782 MIER1Q8N108 512 aa13.58□□□□□ -0.24
LSM5-203ENST00000409782 PLCD3Q8N3E9 789 aa13.57□□□□□ -0.24
LSM5-203ENST00000409782 FXR2P51116 673 aaKnown RBP eCLIP13.56□□□□□ -0.24
LSM5-203ENST00000409782 PIP4P2Q8N4L2 257 aa13.52□□□□□ -0.25
LSM5-203ENST00000409782 PRKAR2AP13861 404 aaKnown RBP13.49□□□□□ -0.25
LSM5-203ENST00000409782 CREBZFQ9NS37 354 aa13.48□□□□□ -0.25
LSM5-203ENST00000409782 CHADLQ6NUI6 762 aa13.46□□□□□ -0.25
LSM5-203ENST00000409782 POTEHQ6S545 545 aa13.44□□□□□ -0.26
LSM5-203ENST00000409782 ZBTB47Q9UFB7 747 aaPredicted RBP13.44□□□□□ -0.26
LSM5-203ENST00000409782 KLHL34Q8N239 644 aa13.42□□□□□ -0.26
LSM5-203ENST00000409782 IFNLR1Q8IU57 520 aaPredicted RBP13.37□□□□□ -0.27
LSM5-203ENST00000409782 FARP1Q9Y4F1 1045 aaPredicted RBP13.36□□□□□ -0.27
LSM5-203ENST00000409782 NPM1P06748 294 aaKnown RBP eCLIP13.35□□□□□ -0.27
LSM5-203ENST00000409782 MNX1P50219 401 aaPredicted RBP13.32□□□□□ -0.28
LSM5-203ENST00000409782 SPOCK2Q92563 424 aa13.27□□□□□ -0.29
LSM5-203ENST00000409782 NUBP1P53384 320 aa13.16□□□□□ -0.3
LSM5-203ENST00000409782 HAX1O00165 279 aa13.15□□□□□ -0.3
LSM5-203ENST00000409782 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
LSM5-203ENST00000409782 PLCB2Q00722 1185 aa13.14□□□□□ -0.31
LSM5-203ENST00000409782 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
LSM5-203ENST00000409782 RASEFQ8IZ41 740 aa13.12□□□□□ -0.31
LSM5-203ENST00000409782 CD44P16070 742 aaKnown RBP13.11□□□□□ -0.31
LSM5-203ENST00000409782 DCAF8Q5TAQ9 597 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms