RNA–Protein interactions for RNA: ENST00000406949.5

PCNX4-204, Transcript of pecanex 4, humanhuman

TSL 2 BASIC

Gene PCNX4, Length 3,513 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-204ENST00000406949 NISCHQ9Y2I1 1504 aa23.88■■□□□ 1.41
PCNX4-204ENST00000406949 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
PCNX4-204ENST00000406949 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
PCNX4-204ENST00000406949 SUPT5HO00267 1087 aaKnown RBP20.8■□□□□ 0.92
PCNX4-204ENST00000406949 ZCCHC6Q5VYS8 1495 aaKnown RBP20.09■□□□□ 0.81
PCNX4-204ENST00000406949 CCDC180Q9P1Z9 1646 aa20.02■□□□□ 0.8
PCNX4-204ENST00000406949 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
PCNX4-204ENST00000406949 EHMT2Q96KQ7 1210 aa19.44■□□□□ 0.7
PCNX4-204ENST00000406949 PCGF6Q9BYE7 350 aa19.44■□□□□ 0.7
PCNX4-204ENST00000406949 LOC105371045A0A1W2PR82 267 aa19.39■□□□□ 0.69
PCNX4-204ENST00000406949 MYO15BQ96JP2 1530 aa19.38■□□□□ 0.69
PCNX4-204ENST00000406949 ABCC9O60706 1549 aa19.37■□□□□ 0.69
PCNX4-204ENST00000406949 FAM9AQ8IZU1 332 aaPredicted RBP19.35■□□□□ 0.69
PCNX4-204ENST00000406949 DCAF1Q9Y4B6 1507 aa19.28■□□□□ 0.68
PCNX4-204ENST00000406949 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
PCNX4-204ENST00000406949 TRIM41Q8WV44 630 aa19.24■□□□□ 0.67
PCNX4-204ENST00000406949 HRCP23327 699 aa19.06■□□□□ 0.64
PCNX4-204ENST00000406949 RSF1Q96T23 1441 aaPredicted RBP19■□□□□ 0.63
PCNX4-204ENST00000406949 PPARGC1BQ86YN6 1023 aaKnown RBP18.9■□□□□ 0.62
PCNX4-204ENST00000406949 TRIM26Q12899 539 aaPredicted RBP18.83■□□□□ 0.61
PCNX4-204ENST00000406949 CECR2Q9BXF3 1484 aa18.81■□□□□ 0.6
PCNX4-204ENST00000406949 NACADO15069 1562 aa18.76■□□□□ 0.59
PCNX4-204ENST00000406949 TTBK1Q5TCY1 1321 aaPredicted RBP18.76■□□□□ 0.59
PCNX4-204ENST00000406949 PABPN1Q86U42 306 aaKnown RBP eCLIP18.75■□□□□ 0.59
PCNX4-204ENST00000406949 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
PCNX4-204ENST00000406949 MROH2BQ7Z745 1585 aa18.65■□□□□ 0.58
PCNX4-204ENST00000406949 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
PCNX4-204ENST00000406949 WIZO95785 1651 aa18.5■□□□□ 0.55
PCNX4-204ENST00000406949 RANGAP1P46060 587 aaPredicted RBP18.45■□□□□ 0.54
PCNX4-204ENST00000406949 ZEB1P37275 1124 aaPredicted RBP18.43■□□□□ 0.54
PCNX4-204ENST00000406949 BAZ1AQ9NRL2 1556 aaPredicted RBP18.39■□□□□ 0.54
PCNX4-204ENST00000406949 CCER1Q8TC90 406 aaPredicted RBP18.37■□□□□ 0.53
PCNX4-204ENST00000406949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
PCNX4-204ENST00000406949 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
PCNX4-204ENST00000406949 CCDC88BA6NC98 1476 aa18.23■□□□□ 0.51
PCNX4-204ENST00000406949 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.51
PCNX4-204ENST00000406949 APLP2Q06481 763 aa18.19■□□□□ 0.5
PCNX4-204ENST00000406949 SMARCA4P51532 1647 aa18.15■□□□□ 0.5
PCNX4-204ENST00000406949 TOP2AP11388 1531 aaKnown RBP18.15■□□□□ 0.5
PCNX4-204ENST00000406949 SOGA1O94964 1423 aa18.13■□□□□ 0.49
PCNX4-204ENST00000406949 HNRNPUL2Q1KMD3 747 aaKnown RBP18.06■□□□□ 0.48
PCNX4-204ENST00000406949 CEP162Q5TB80 1403 aa18.05■□□□□ 0.48
PCNX4-204ENST00000406949 SMARCA2P51531 1590 aa18.03■□□□□ 0.48
PCNX4-204ENST00000406949 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.47
PCNX4-204ENST00000406949 WRNQ14191 1432 aaPredicted RBP eCLIP18.01■□□□□ 0.47
PCNX4-204ENST00000406949 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
PCNX4-204ENST00000406949 BAZ1BQ9UIG0 1483 aaKnown RBP17.96■□□□□ 0.47
PCNX4-204ENST00000406949 UNC13AQ9UPW8 1703 aa17.93■□□□□ 0.46
PCNX4-204ENST00000406949 TNIKQ9UKE5 1360 aa17.92■□□□□ 0.46
PCNX4-204ENST00000406949 EEA1Q15075 1411 aa17.89■□□□□ 0.45
PCNX4-204ENST00000406949 GOLGA3Q08378 1498 aa17.87■□□□□ 0.45
PCNX4-204ENST00000406949 BICRAQ9NZM4 1560 aa17.84■□□□□ 0.45
PCNX4-204ENST00000406949 ATAD2BQ9ULI0 1458 aa17.84■□□□□ 0.45
PCNX4-204ENST00000406949 CLIP1P30622 1438 aa17.81■□□□□ 0.44
PCNX4-204ENST00000406949 DIEXFQ68CQ4 756 aaKnown RBP17.8■□□□□ 0.44
PCNX4-204ENST00000406949 EIF4G1Q04637 1599 aaKnown RBP17.8■□□□□ 0.44
PCNX4-204ENST00000406949 ATP1B4Q9UN42 357 aaPredicted RBP17.79■□□□□ 0.44
PCNX4-204ENST00000406949 ITGAEP38570 1179 aa17.77■□□□□ 0.44
PCNX4-204ENST00000406949 CEP164Q9UPV0 1460 aa17.76■□□□□ 0.43
PCNX4-204ENST00000406949 YTHDC1Q96MU7 727 aaKnown RBP17.73■□□□□ 0.43
PCNX4-204ENST00000406949 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
PCNX4-204ENST00000406949 MYT1Q01538 1121 aa17.66■□□□□ 0.42
PCNX4-204ENST00000406949 CENPBP07199 599 aaPredicted RBP17.66■□□□□ 0.42
PCNX4-204ENST00000406949 RAPGEF2Q9Y4G8 1499 aa17.64■□□□□ 0.41
PCNX4-204ENST00000406949 ZNF316A6NFI3 1004 aaPredicted RBP17.59■□□□□ 0.41
PCNX4-204ENST00000406949 P3H3Q8IVL6 736 aa17.58■□□□□ 0.4
PCNX4-204ENST00000406949 VPS8Q8N3P4 1428 aa17.56■□□□□ 0.4
PCNX4-204ENST00000406949 SCAF1Q9H7N4 1312 aaKnown RBP17.55■□□□□ 0.4
PCNX4-204ENST00000406949 PEG3Q9GZU2 1588 aa17.54■□□□□ 0.4
PCNX4-204ENST00000406949 KIF27Q86VH2 1401 aa17.51■□□□□ 0.39
PCNX4-204ENST00000406949 NEUROD1Q13562 356 aa17.48■□□□□ 0.39
PCNX4-204ENST00000406949 KANK4Q5T7N3 995 aaPredicted RBP17.47■□□□□ 0.39
PCNX4-204ENST00000406949 ACIN1Q9UKV3 1341 aaKnown RBP17.47■□□□□ 0.39
PCNX4-204ENST00000406949 FAM50AQ14320 339 aaKnown RBP17.46■□□□□ 0.38
PCNX4-204ENST00000406949 GTF3C3Q9Y5Q9 886 aa17.43■□□□□ 0.38
PCNX4-204ENST00000406949 KIF21BO75037 1637 aa17.43■□□□□ 0.38
PCNX4-204ENST00000406949 NCAPD3P42695 1498 aa17.42■□□□□ 0.38
PCNX4-204ENST00000406949 CUX2O14529 1486 aa17.41■□□□□ 0.38
PCNX4-204ENST00000406949 TOP2BQ02880 1626 aa17.37■□□□□ 0.37
PCNX4-204ENST00000406949 MIER1Q8N108 512 aa17.35■□□□□ 0.37
PCNX4-204ENST00000406949 CUX1P39880 1505 aa17.33■□□□□ 0.36
PCNX4-204ENST00000406949 CADPSQ9ULU8 1353 aa17.31■□□□□ 0.36
PCNX4-204ENST00000406949 CARMIL1Q5VZK9 1371 aa17.3■□□□□ 0.36
PCNX4-204ENST00000406949 HMGXB3Q12766 1538 aa17.29■□□□□ 0.36
PCNX4-204ENST00000406949 CFTRP13569 1480 aa17.28■□□□□ 0.36
PCNX4-204ENST00000406949 PRXQ9BXM0 1461 aa17.27■□□□□ 0.36
PCNX4-204ENST00000406949 ARAP1Q96P48 1450 aa17.26■□□□□ 0.35
PCNX4-204ENST00000406949 CCNB3Q8WWL7 1395 aa17.22■□□□□ 0.35
PCNX4-204ENST00000406949 IGF1RP08069 1367 aa17.22■□□□□ 0.35
PCNX4-204ENST00000406949 ARID3CA6NKF2 412 aa17.21■□□□□ 0.34
PCNX4-204ENST00000406949 ERICH3Q5RHP9 1530 aa17.19■□□□□ 0.34
PCNX4-204ENST00000406949 FGD5Q6ZNL6 1462 aa17.19■□□□□ 0.34
PCNX4-204ENST00000406949 BIVM-ERCC5R4GMW8 1640 aa17.17■□□□□ 0.34
PCNX4-204ENST00000406949 FANCD2Q9BXW9 1451 aa17.15■□□□□ 0.34
PCNX4-204ENST00000406949 ARHGAP35Q9NRY4 1499 aa17.15■□□□□ 0.34
PCNX4-204ENST00000406949 DHX57Q6P158 1386 aaKnown RBP17.14■□□□□ 0.33
PCNX4-204ENST00000406949 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
PCNX4-204ENST00000406949 TDRD9Q8NDG6 1382 aaKnown RBP17.1■□□□□ 0.33
PCNX4-204ENST00000406949 FHOD3Q2V2M9 1422 aa17.09■□□□□ 0.33
PCNX4-204ENST00000406949 SIN3AQ96ST3 1273 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms