RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 AEBP2Q6ZN18 517 aaPredicted RBP26.9■■□□□ 1.9
HMGB1P13-201ENST00000406019 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
HMGB1P13-201ENST00000406019 PHF23Q9BUL5 403 aaPredicted RBP22.99■■□□□ 1.27
HMGB1P13-201ENST00000406019 SENP3Q9H4L4 574 aaPredicted RBP22.71■■□□□ 1.23
HMGB1P13-201ENST00000406019 FOXD1Q16676 465 aa21.17■□□□□ 0.98
HMGB1P13-201ENST00000406019 PLPPR3Q6T4P5 718 aa21.03■□□□□ 0.96
HMGB1P13-201ENST00000406019 PPP6R1Q9UPN7 881 aa20.3■□□□□ 0.84
HMGB1P13-201ENST00000406019 ADRA2BP18089 450 aa20.21■□□□□ 0.83
HMGB1P13-201ENST00000406019 PIAS4Q8N2W9 510 aaPredicted RBP19.83■□□□□ 0.77
HMGB1P13-201ENST00000406019 MSH5O43196 834 aa19.47■□□□□ 0.71
HMGB1P13-201ENST00000406019 PPP4R3CPQ6ZMV5 832 aa18.54■□□□□ 0.56
HMGB1P13-201ENST00000406019 MAPK8IP2Q13387 824 aaPredicted RBP18.39■□□□□ 0.53
HMGB1P13-201ENST00000406019 SCAF1Q9H7N4 1312 aaKnown RBP18.35■□□□□ 0.53
HMGB1P13-201ENST00000406019 DMRT2Q9Y5R5 561 aa18.17■□□□□ 0.5
HMGB1P13-201ENST00000406019 CNKSR2Q8WXI2 1034 aa18.04■□□□□ 0.48
HMGB1P13-201ENST00000406019 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
HMGB1P13-201ENST00000406019 KCNA4P22459 653 aa18.01■□□□□ 0.47
HMGB1P13-201ENST00000406019 NCBP3Q53F19 620 aaKnown RBP17.92■□□□□ 0.46
HMGB1P13-201ENST00000406019 NPM3O75607 178 aaKnown RBP17.8■□□□□ 0.44
HMGB1P13-201ENST00000406019 HOXD11P31277 338 aaPredicted RBP17.77■□□□□ 0.44
HMGB1P13-201ENST00000406019 RNF216Q9NWF9 866 aaPredicted RBP17.75■□□□□ 0.43
HMGB1P13-201ENST00000406019 DNAJC5BQ9UF47 199 aa17.43■□□□□ 0.38
HMGB1P13-201ENST00000406019 DCAF8L1A6NGE4 600 aa17.17■□□□□ 0.34
HMGB1P13-201ENST00000406019 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
HMGB1P13-201ENST00000406019 SLC4A2P04920 1241 aa16.9■□□□□ 0.3
HMGB1P13-201ENST00000406019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.76■□□□□ 0.27
HMGB1P13-201ENST00000406019 RNF39Q9H2S5 420 aa16.76■□□□□ 0.27
HMGB1P13-201ENST00000406019 ZBTB22O15209 634 aa16.65■□□□□ 0.26
HMGB1P13-201ENST00000406019 U3KPZ7 1027 aaPredicted RBP16.64■□□□□ 0.25
HMGB1P13-201ENST00000406019 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
HMGB1P13-201ENST00000406019 C1QBPQ07021 282 aaKnown RBP16.48■□□□□ 0.23
HMGB1P13-201ENST00000406019 MYCNP04198 464 aaPredicted RBP16.39■□□□□ 0.21
HMGB1P13-201ENST00000406019 CSRNP3Q8WYN3 585 aa16.39■□□□□ 0.21
HMGB1P13-201ENST00000406019 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
HMGB1P13-201ENST00000406019 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
HMGB1P13-201ENST00000406019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.22■□□□□ 0.19
HMGB1P13-201ENST00000406019 HNRNPUL2Q1KMD3 747 aaKnown RBP16.22■□□□□ 0.19
HMGB1P13-201ENST00000406019 SAMD1Q6SPF0 538 aaPredicted RBP16.19■□□□□ 0.18
HMGB1P13-201ENST00000406019 SPINK5Q9NQ38 1064 aaPredicted RBP16.17■□□□□ 0.18
HMGB1P13-201ENST00000406019 ATF5Q9Y2D1 282 aaPredicted RBP16.06■□□□□ 0.16
HMGB1P13-201ENST00000406019 APLP2Q06481 763 aa16.04■□□□□ 0.16
HMGB1P13-201ENST00000406019 ATXN8OSP0DMR3 200 aa16.01■□□□□ 0.15
HMGB1P13-201ENST00000406019 CAPN15O75808 1086 aa15.99■□□□□ 0.15
HMGB1P13-201ENST00000406019 ZNF219Q9P2Y4 722 aaPredicted RBP15.92■□□□□ 0.14
HMGB1P13-201ENST00000406019 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
HMGB1P13-201ENST00000406019 DSG3P32926 999 aa15.89■□□□□ 0.13
HMGB1P13-201ENST00000406019 ABCB7O75027 752 aa15.73■□□□□ 0.11
HMGB1P13-201ENST00000406019 POLA2Q14181 598 aa15.65■□□□□ 0.1
HMGB1P13-201ENST00000406019 MKRN4PQ13434 485 aaPredicted RBP15.37■□□□□ 0.05
HMGB1P13-201ENST00000406019 ZBTB12Q9Y330 459 aaPredicted RBP15.35■□□□□ 0.05
HMGB1P13-201ENST00000406019 FBLN2P98095 1184 aa15.2■□□□□ 0.02
HMGB1P13-201ENST00000406019 OSCARQ8IYS5 282 aa15.17■□□□□ 0.02
HMGB1P13-201ENST00000406019 RBM42Q9BTD8 480 aaKnown RBP15.03■□□□□ -0
HMGB1P13-201ENST00000406019 SPDYE2BA6NHP3 402 aa14.98□□□□□ -0.01
HMGB1P13-201ENST00000406019 SPDYE6P0CI01 402 aa14.98□□□□□ -0.01
HMGB1P13-201ENST00000406019 SPDYE2Q495Y8 402 aa14.98□□□□□ -0.01
HMGB1P13-201ENST00000406019 SSUH2Q9Y2M2 353 aa14.94□□□□□ -0.02
HMGB1P13-201ENST00000406019 AKT1S1Q96B36 256 aa14.88□□□□□ -0.03
HMGB1P13-201ENST00000406019 ZNF692Q9BU19 519 aaPredicted RBP14.84□□□□□ -0.03
HMGB1P13-201ENST00000406019 SPDYE4A6NLX3 237 aa14.83□□□□□ -0.04
HMGB1P13-201ENST00000406019 REM2Q8IYK8 340 aaPredicted RBP14.76□□□□□ -0.05
HMGB1P13-201ENST00000406019 PROM2Q8N271 834 aa14.75□□□□□ -0.05
HMGB1P13-201ENST00000406019 FKBP8Q14318 412 aa14.71□□□□□ -0.05
HMGB1P13-201ENST00000406019 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
HMGB1P13-201ENST00000406019 PITPNM1O00562 1244 aa14.6□□□□□ -0.07
HMGB1P13-201ENST00000406019 SPDYE1Q8NFV5 336 aaPredicted RBP14.53□□□□□ -0.08
HMGB1P13-201ENST00000406019 CHRDL2Q6WN34 429 aa14.51□□□□□ -0.09
HMGB1P13-201ENST00000406019 CLEC11AQ9Y240 323 aa14.4□□□□□ -0.1
HMGB1P13-201ENST00000406019 FXR2P51116 673 aaKnown RBP eCLIP14.38□□□□□ -0.11
HMGB1P13-201ENST00000406019 STAG3Q9UJ98 1225 aa14.35□□□□□ -0.11
HMGB1P13-201ENST00000406019 PIP4P2Q8N4L2 257 aa14.34□□□□□ -0.11
HMGB1P13-201ENST00000406019 PRR29P0C7W0 189 aa14.28□□□□□ -0.12
HMGB1P13-201ENST00000406019 CREBZFQ9NS37 354 aa14.21□□□□□ -0.13
HMGB1P13-201ENST00000406019 POTEHQ6S545 545 aa14.2□□□□□ -0.14
HMGB1P13-201ENST00000406019 PRKAR2AP13861 404 aaKnown RBP14.17□□□□□ -0.14
HMGB1P13-201ENST00000406019 FBXO3Q9UK99 471 aa14.17□□□□□ -0.14
HMGB1P13-201ENST00000406019 CHADLQ6NUI6 762 aa14.16□□□□□ -0.14
HMGB1P13-201ENST00000406019 MNX1P50219 401 aaPredicted RBP14.11□□□□□ -0.15
HMGB1P13-201ENST00000406019 VASPP50552 380 aaPredicted RBP14.08□□□□□ -0.16
HMGB1P13-201ENST00000406019 FARP1Q9Y4F1 1045 aaPredicted RBP14.03□□□□□ -0.16
HMGB1P13-201ENST00000406019 MIER1Q8N108 512 aa13.99□□□□□ -0.17
HMGB1P13-201ENST00000406019 PLCD3Q8N3E9 789 aa13.95□□□□□ -0.18
HMGB1P13-201ENST00000406019 IFNLR1Q8IU57 520 aaPredicted RBP13.91□□□□□ -0.18
HMGB1P13-201ENST00000406019 C19orf67A6NJJ6 358 aa13.9□□□□□ -0.18
HMGB1P13-201ENST00000406019 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
HMGB1P13-201ENST00000406019 EVX2Q03828 476 aa13.84□□□□□ -0.19
HMGB1P13-201ENST00000406019 NPM1P06748 294 aaKnown RBP eCLIP13.82□□□□□ -0.2
HMGB1P13-201ENST00000406019 NUBP1P53384 320 aa13.82□□□□□ -0.2
HMGB1P13-201ENST00000406019 ZBTB47Q9UFB7 747 aaPredicted RBP13.8□□□□□ -0.2
HMGB1P13-201ENST00000406019 HAX1O00165 279 aa13.78□□□□□ -0.2
HMGB1P13-201ENST00000406019 RASEFQ8IZ41 740 aa13.77□□□□□ -0.21
HMGB1P13-201ENST00000406019 CD44P16070 742 aaKnown RBP13.76□□□□□ -0.21
HMGB1P13-201ENST00000406019 KLHL34Q8N239 644 aa13.71□□□□□ -0.21
HMGB1P13-201ENST00000406019 SPOCK2Q92563 424 aa13.69□□□□□ -0.22
HMGB1P13-201ENST00000406019 ZNF579Q8NAF0 562 aaKnown RBP13.65□□□□□ -0.22
HMGB1P13-201ENST00000406019 CCDC61Q9Y6R9 512 aa13.65□□□□□ -0.22
HMGB1P13-201ENST00000406019 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
HMGB1P13-201ENST00000406019 SP7Q8TDD2 431 aaPredicted RBP13.61□□□□□ -0.23
HMGB1P13-201ENST00000406019 TSPYL2Q9H2G4 693 aaPredicted RBP13.61□□□□□ -0.23
HMGB1P13-201ENST00000406019 FAM212AQ96EL1 285 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms