RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 NISCHQ9Y2I1 1504 aa17.75■□□□□ 0.43
LIG4-202ENST00000405925 DCAF8L2P0C7V8 631 aa16.86■□□□□ 0.29
LIG4-202ENST00000405925 SHROOM4Q9ULL8 1493 aa15.97■□□□□ 0.15
LIG4-202ENST00000405925 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
LIG4-202ENST00000405925 ABCC9O60706 1549 aa15.26■□□□□ 0.03
LIG4-202ENST00000405925 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
LIG4-202ENST00000405925 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
LIG4-202ENST00000405925 PABPN1Q86U42 306 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIG4-202ENST00000405925 FAM9AQ8IZU1 332 aaPredicted RBP14.79□□□□□ -0.04
LIG4-202ENST00000405925 ZCCHC6Q5VYS8 1495 aaKnown RBP14.75□□□□□ -0.05
LIG4-202ENST00000405925 TRIM41Q8WV44 630 aa14.69□□□□□ -0.06
LIG4-202ENST00000405925 SCRIBQ14160 1630 aa14.52□□□□□ -0.09
LIG4-202ENST00000405925 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
LIG4-202ENST00000405925 APLP2Q06481 763 aa14.4□□□□□ -0.1
LIG4-202ENST00000405925 CHIC1Q5VXU3 224 aa14.37□□□□□ -0.11
LIG4-202ENST00000405925 RB1CC1Q8TDY2 1594 aa14.37□□□□□ -0.11
LIG4-202ENST00000405925 UBTFP17480 764 aaKnown RBP14.36□□□□□ -0.11
LIG4-202ENST00000405925 TTBK1Q5TCY1 1321 aaPredicted RBP14.33□□□□□ -0.12
LIG4-202ENST00000405925 NACADO15069 1562 aa14.32□□□□□ -0.12
LIG4-202ENST00000405925 DCAF1Q9Y4B6 1507 aa14.21□□□□□ -0.14
LIG4-202ENST00000405925 ATP1B4Q9UN42 357 aaPredicted RBP14.2□□□□□ -0.14
LIG4-202ENST00000405925 LOC105371045A0A1W2PR82 267 aa14.16□□□□□ -0.14
LIG4-202ENST00000405925 PCGF6Q9BYE7 350 aa14.12□□□□□ -0.15
LIG4-202ENST00000405925 PPARGC1BQ86YN6 1023 aaKnown RBP14.03□□□□□ -0.16
LIG4-202ENST00000405925 RSF1Q96T23 1441 aaPredicted RBP14.02□□□□□ -0.16
LIG4-202ENST00000405925 CECR2Q9BXF3 1484 aa13.96□□□□□ -0.17
LIG4-202ENST00000405925 MYO15BQ96JP2 1530 aa13.93□□□□□ -0.18
LIG4-202ENST00000405925 BAZ1AQ9NRL2 1556 aaPredicted RBP13.85□□□□□ -0.19
LIG4-202ENST00000405925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
LIG4-202ENST00000405925 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
LIG4-202ENST00000405925 BAZ1BQ9UIG0 1483 aaKnown RBP13.83□□□□□ -0.19
LIG4-202ENST00000405925 FBLN2P98095 1184 aa13.81□□□□□ -0.2
LIG4-202ENST00000405925 CSRNP3Q8WYN3 585 aa13.81□□□□□ -0.2
LIG4-202ENST00000405925 CCER1Q8TC90 406 aaPredicted RBP13.78□□□□□ -0.2
LIG4-202ENST00000405925 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.21
LIG4-202ENST00000405925 TRIM26Q12899 539 aaPredicted RBP13.73□□□□□ -0.21
LIG4-202ENST00000405925 ITGAEP38570 1179 aa13.73□□□□□ -0.21
LIG4-202ENST00000405925 P3H3Q8IVL6 736 aa13.64□□□□□ -0.23
LIG4-202ENST00000405925 WRNQ14191 1432 aaPredicted RBP eCLIP13.59□□□□□ -0.23
LIG4-202ENST00000405925 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
LIG4-202ENST00000405925 MYT1LQ9UL68 1186 aa13.58□□□□□ -0.24
LIG4-202ENST00000405925 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
LIG4-202ENST00000405925 WIZO95785 1651 aa13.55□□□□□ -0.24
LIG4-202ENST00000405925 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
LIG4-202ENST00000405925 ARID3CA6NKF2 412 aa13.54□□□□□ -0.24
LIG4-202ENST00000405925 ATAD2BQ9ULI0 1458 aa13.52□□□□□ -0.25
LIG4-202ENST00000405925 FAM50AQ14320 339 aaKnown RBP13.51□□□□□ -0.25
LIG4-202ENST00000405925 SMARCA4P51532 1647 aa13.49□□□□□ -0.25
LIG4-202ENST00000405925 ERCC6Q03468 1493 aa13.47□□□□□ -0.25
LIG4-202ENST00000405925 TOP2AP11388 1531 aaKnown RBP13.46□□□□□ -0.25
LIG4-202ENST00000405925 CHMP7Q8WUX9 453 aaPredicted RBP13.44□□□□□ -0.26
LIG4-202ENST00000405925 EEA1Q15075 1411 aa13.41□□□□□ -0.26
LIG4-202ENST00000405925 KIF27Q86VH2 1401 aa13.4□□□□□ -0.26
LIG4-202ENST00000405925 CADPSQ9ULU8 1353 aa13.37□□□□□ -0.27
LIG4-202ENST00000405925 ABCC8Q09428 1581 aa13.37□□□□□ -0.27
LIG4-202ENST00000405925 PDS5BQ9NTI5 1447 aa13.35□□□□□ -0.27
LIG4-202ENST00000405925 SOGA1O94964 1423 aa13.34□□□□□ -0.27
LIG4-202ENST00000405925 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
LIG4-202ENST00000405925 CLIP1P30622 1438 aa13.33□□□□□ -0.28
LIG4-202ENST00000405925 HRCP23327 699 aa13.33□□□□□ -0.28
LIG4-202ENST00000405925 GOLGA3Q08378 1498 aa13.32□□□□□ -0.28
LIG4-202ENST00000405925 CDK11AQ9UQ88 783 aaPredicted RBP13.32□□□□□ -0.28
LIG4-202ENST00000405925 CUX2O14529 1486 aa13.31□□□□□ -0.28
LIG4-202ENST00000405925 TRIM52Q96A61 297 aa13.29□□□□□ -0.28
LIG4-202ENST00000405925 ZNF777Q9ULD5 760 aaPredicted RBP13.28□□□□□ -0.28
LIG4-202ENST00000405925 NCAPD3P42695 1498 aa13.28□□□□□ -0.28
LIG4-202ENST00000405925 CEP164Q9UPV0 1460 aa13.27□□□□□ -0.29
LIG4-202ENST00000405925 CEP162Q5TB80 1403 aa13.27□□□□□ -0.29
LIG4-202ENST00000405925 TDRD9Q8NDG6 1382 aaKnown RBP13.24□□□□□ -0.29
LIG4-202ENST00000405925 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
LIG4-202ENST00000405925 CARMIL1Q5VZK9 1371 aa13.23□□□□□ -0.29
LIG4-202ENST00000405925 TNIKQ9UKE5 1360 aa13.22□□□□□ -0.29
LIG4-202ENST00000405925 NPM1P06748 294 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIG4-202ENST00000405925 FANCD2Q9BXW9 1451 aa13.19□□□□□ -0.3
LIG4-202ENST00000405925 MTUS2Q5JR59 1369 aa13.18□□□□□ -0.3
LIG4-202ENST00000405925 NEUROD1Q13562 356 aa13.18□□□□□ -0.3
LIG4-202ENST00000405925 POLR3GLQ9BT43 218 aa13.17□□□□□ -0.3
LIG4-202ENST00000405925 CC2D2AQ9P2K1 1620 aa13.13□□□□□ -0.31
LIG4-202ENST00000405925 CHIC2Q9UKJ5 165 aa13.09□□□□□ -0.31
LIG4-202ENST00000405925 KCNH8Q96L42 1107 aa13.08□□□□□ -0.32
LIG4-202ENST00000405925 DNAJC5BQ9UF47 199 aa13.08□□□□□ -0.32
LIG4-202ENST00000405925 PLEKHD1A6NEE1 506 aa13.07□□□□□ -0.32
LIG4-202ENST00000405925 RUSC2Q8N2Y8 1516 aa13.06□□□□□ -0.32
LIG4-202ENST00000405925 YTHDC1Q96MU7 727 aaKnown RBP13.06□□□□□ -0.32
LIG4-202ENST00000405925 ZNF326Q5BKZ1 582 aaKnown RBP13.05□□□□□ -0.32
LIG4-202ENST00000405925 CNGB1Q14028 1251 aaPredicted RBP13.05□□□□□ -0.32
LIG4-202ENST00000405925 NESP48681 1621 aa13.05□□□□□ -0.32
LIG4-202ENST00000405925 HMGXB3Q12766 1538 aa13.05□□□□□ -0.32
LIG4-202ENST00000405925 CENPBP07199 599 aaPredicted RBP13.03□□□□□ -0.32
LIG4-202ENST00000405925 UNC13AQ9UPW8 1703 aa13.03□□□□□ -0.32
LIG4-202ENST00000405925 CFTRP13569 1480 aa13.03□□□□□ -0.32
LIG4-202ENST00000405925 FGD5Q6ZNL6 1462 aa13.01□□□□□ -0.33
LIG4-202ENST00000405925 TSPY4P0CV99 314 aa13.01□□□□□ -0.33
LIG4-202ENST00000405925 TSPY10P0CW01 314 aa13.01□□□□□ -0.33
LIG4-202ENST00000405925 RAPGEF2Q9Y4G8 1499 aa12.99□□□□□ -0.33
LIG4-202ENST00000405925 RAD54L2Q9Y4B4 1467 aa12.99□□□□□ -0.33
LIG4-202ENST00000405925 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
LIG4-202ENST00000405925 CFDP1Q9UEE9 299 aaPredicted RBP12.95□□□□□ -0.34
LIG4-202ENST00000405925 RRP7BPQ9NSQ0 103 aa12.95□□□□□ -0.34
LIG4-202ENST00000405925 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms