RNA–Protein interactions for RNA: ENST00000400075.3

GABPA-202, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPA, Length 4,814 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-202ENST00000400075 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
GABPA-202ENST00000400075 NISCHQ9Y2I1 1504 aa25.69■■□□□ 1.7
GABPA-202ENST00000400075 SUPT5HO00267 1087 aaKnown RBP24.32■■□□□ 1.48
GABPA-202ENST00000400075 SHROOM4Q9ULL8 1493 aa24.19■■□□□ 1.46
GABPA-202ENST00000400075 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
GABPA-202ENST00000400075 FAM9AQ8IZU1 332 aaPredicted RBP23.38■■□□□ 1.33
GABPA-202ENST00000400075 APLP2Q06481 763 aa23.06■■□□□ 1.28
GABPA-202ENST00000400075 ABCC9O60706 1549 aa22.91■■□□□ 1.26
GABPA-202ENST00000400075 RANGAP1P46060 587 aaPredicted RBP22.73■■□□□ 1.23
GABPA-202ENST00000400075 ATP1B4Q9UN42 357 aaPredicted RBP22.65■■□□□ 1.22
GABPA-202ENST00000400075 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
GABPA-202ENST00000400075 PABPN1Q86U42 306 aaKnown RBP eCLIP22.62■■□□□ 1.21
GABPA-202ENST00000400075 UBTFP17480 764 aaKnown RBP22.44■■□□□ 1.18
GABPA-202ENST00000400075 TTBK1Q5TCY1 1321 aaPredicted RBP22.4■■□□□ 1.18
GABPA-202ENST00000400075 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
GABPA-202ENST00000400075 HNRNPUL2Q1KMD3 747 aaKnown RBP22.16■■□□□ 1.14
GABPA-202ENST00000400075 MYT1LQ9UL68 1186 aa22.12■■□□□ 1.13
GABPA-202ENST00000400075 FBLN2P98095 1184 aa21.83■■□□□ 1.08
GABPA-202ENST00000400075 PCGF6Q9BYE7 350 aa21.76■■□□□ 1.07
GABPA-202ENST00000400075 ITGAEP38570 1179 aa21.52■■□□□ 1.03
GABPA-202ENST00000400075 CCER1Q8TC90 406 aaPredicted RBP21.51■■□□□ 1.03
GABPA-202ENST00000400075 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
GABPA-202ENST00000400075 PPARGC1BQ86YN6 1023 aaKnown RBP21.49■■□□□ 1.03
GABPA-202ENST00000400075 SCRIBQ14160 1630 aa21.48■■□□□ 1.03
GABPA-202ENST00000400075 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
GABPA-202ENST00000400075 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
GABPA-202ENST00000400075 LOC105371045A0A1W2PR82 267 aa21.22■□□□□ 0.99
GABPA-202ENST00000400075 NPM1P06748 294 aaKnown RBP eCLIP21.21■□□□□ 0.99
GABPA-202ENST00000400075 PELP1Q8IZL8 1130 aaKnown RBP21.18■□□□□ 0.98
GABPA-202ENST00000400075 ZEB1P37275 1124 aaPredicted RBP21.13■□□□□ 0.97
GABPA-202ENST00000400075 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
GABPA-202ENST00000400075 FAM50AQ14320 339 aaKnown RBP21.1■□□□□ 0.97
GABPA-202ENST00000400075 POLR3GLQ9BT43 218 aa21.09■□□□□ 0.97
GABPA-202ENST00000400075 ARID3CA6NKF2 412 aa21.08■□□□□ 0.97
GABPA-202ENST00000400075 P3H3Q8IVL6 736 aa21.06■□□□□ 0.96
GABPA-202ENST00000400075 SLC4A1APQ9BWU0 796 aaKnown RBP20.99■□□□□ 0.95
GABPA-202ENST00000400075 ESF1Q9H501 851 aaKnown RBP20.99■□□□□ 0.95
GABPA-202ENST00000400075 CDK11AQ9UQ88 783 aaPredicted RBP20.98■□□□□ 0.95
GABPA-202ENST00000400075 TRIM52Q96A61 297 aa20.98■□□□□ 0.95
GABPA-202ENST00000400075 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
GABPA-202ENST00000400075 NACADO15069 1562 aa20.94■□□□□ 0.94
GABPA-202ENST00000400075 CSRNP3Q8WYN3 585 aa20.94■□□□□ 0.94
GABPA-202ENST00000400075 TRIM26Q12899 539 aaPredicted RBP20.89■□□□□ 0.93
GABPA-202ENST00000400075 BCANQ96GW7 911 aa20.88■□□□□ 0.93
GABPA-202ENST00000400075 ZNF777Q9ULD5 760 aaPredicted RBP20.87■□□□□ 0.93
GABPA-202ENST00000400075 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
GABPA-202ENST00000400075 ERCC6Q03468 1493 aa20.78■□□□□ 0.92
GABPA-202ENST00000400075 CNGB1Q14028 1251 aaPredicted RBP20.77■□□□□ 0.92
GABPA-202ENST00000400075 BAZ1BQ9UIG0 1483 aaKnown RBP20.65■□□□□ 0.9
GABPA-202ENST00000400075 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
GABPA-202ENST00000400075 ZNF326Q5BKZ1 582 aaKnown RBP20.63■□□□□ 0.89
GABPA-202ENST00000400075 STAG3Q9UJ98 1225 aa20.63■□□□□ 0.89
GABPA-202ENST00000400075 NEFLP07196 543 aa20.56■□□□□ 0.88
GABPA-202ENST00000400075 NEUROD1Q13562 356 aa20.55■□□□□ 0.88
GABPA-202ENST00000400075 CHGAP10645 457 aaKnown RBP20.52■□□□□ 0.88
GABPA-202ENST00000400075 KCNH8Q96L42 1107 aa20.49■□□□□ 0.87
GABPA-202ENST00000400075 TRHP20396 242 aaPredicted RBP20.48■□□□□ 0.87
GABPA-202ENST00000400075 YTHDC1Q96MU7 727 aaKnown RBP20.45■□□□□ 0.86
GABPA-202ENST00000400075 TSPY4P0CV99 314 aa20.42■□□□□ 0.86
GABPA-202ENST00000400075 TSPY10P0CW01 314 aa20.42■□□□□ 0.86
GABPA-202ENST00000400075 PLEKHD1A6NEE1 506 aa20.38■□□□□ 0.85
GABPA-202ENST00000400075 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
GABPA-202ENST00000400075 ARID4BQ4LE39 1312 aaPredicted RBP20.34■□□□□ 0.85
GABPA-202ENST00000400075 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.34■□□□□ 0.85
GABPA-202ENST00000400075 BAZ1AQ9NRL2 1556 aaPredicted RBP20.3■□□□□ 0.84
GABPA-202ENST00000400075 MTUS2Q5JR59 1369 aa20.28■□□□□ 0.84
GABPA-202ENST00000400075 SLC24A1O60721 1099 aa20.26■□□□□ 0.83
GABPA-202ENST00000400075 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
GABPA-202ENST00000400075 DCAF1Q9Y4B6 1507 aa20.25■□□□□ 0.83
GABPA-202ENST00000400075 CHIC2Q9UKJ5 165 aa20.24■□□□□ 0.83
GABPA-202ENST00000400075 WRNQ14191 1432 aaPredicted RBP eCLIP20.24■□□□□ 0.83
GABPA-202ENST00000400075 CECR2Q9BXF3 1484 aa20.21■□□□□ 0.83
GABPA-202ENST00000400075 NEFMP07197 916 aa20.2■□□□□ 0.82
GABPA-202ENST00000400075 KIF27Q86VH2 1401 aa20.2■□□□□ 0.82
GABPA-202ENST00000400075 ERICH6Q7L0X2 663 aa20.16■□□□□ 0.82
GABPA-202ENST00000400075 HRCP23327 699 aa20.13■□□□□ 0.81
GABPA-202ENST00000400075 PPP1R15AO75807 674 aaPredicted RBP20.11■□□□□ 0.81
GABPA-202ENST00000400075 C14orf37Q86TY3 774 aa20.08■□□□□ 0.8
GABPA-202ENST00000400075 SMARCA2P51531 1590 aa20.06■□□□□ 0.8
GABPA-202ENST00000400075 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
GABPA-202ENST00000400075 SCAF1Q9H7N4 1312 aaKnown RBP20.04■□□□□ 0.8
GABPA-202ENST00000400075 EEA1Q15075 1411 aa20.02■□□□□ 0.8
GABPA-202ENST00000400075 CLIP1P30622 1438 aa20.02■□□□□ 0.8
GABPA-202ENST00000400075 SENP3Q9H4L4 574 aaPredicted RBP19.96■□□□□ 0.79
GABPA-202ENST00000400075 CUX2O14529 1486 aa19.96■□□□□ 0.79
GABPA-202ENST00000400075 TDRD9Q8NDG6 1382 aaKnown RBP19.94■□□□□ 0.78
GABPA-202ENST00000400075 TONSLQ96HA7 1378 aa19.93■□□□□ 0.78
GABPA-202ENST00000400075 CADPSQ9ULU8 1353 aa19.93■□□□□ 0.78
GABPA-202ENST00000400075 ANP32CO43423 234 aa19.92■□□□□ 0.78
GABPA-202ENST00000400075 CARMIL1Q5VZK9 1371 aa19.92■□□□□ 0.78
GABPA-202ENST00000400075 MLECQ14165 292 aa19.91■□□□□ 0.78
GABPA-202ENST00000400075 KDM2AQ9Y2K7 1162 aa19.91■□□□□ 0.78
GABPA-202ENST00000400075 SOGA1O94964 1423 aa19.9■□□□□ 0.78
GABPA-202ENST00000400075 RRP7BPQ9NSQ0 103 aa19.9■□□□□ 0.78
GABPA-202ENST00000400075 CLSPNQ9HAW4 1339 aa19.89■□□□□ 0.77
GABPA-202ENST00000400075 DAXXQ9UER7 740 aaPredicted RBP19.88■□□□□ 0.77
GABPA-202ENST00000400075 MYO15BQ96JP2 1530 aa19.88■□□□□ 0.77
GABPA-202ENST00000400075 ZBTB47Q9UFB7 747 aaPredicted RBP19.88■□□□□ 0.77
GABPA-202ENST00000400075 GOLGA3Q08378 1498 aa19.87■□□□□ 0.77
GABPA-202ENST00000400075 CARMIL2Q6F5E8 1435 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms