RNA–Protein interactions for RNA: ENST00000398238.8

NSF-201, Transcript of N-ethylmaleimide sensitive factor, vesicle fusing ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NSF, Length 3,983 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSF-201ENST00000398238 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
NSF-201ENST00000398238 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
NSF-201ENST00000398238 CCDC180Q9P1Z9 1646 aa24.83■■□□□ 1.57
NSF-201ENST00000398238 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
NSF-201ENST00000398238 ZCCHC6Q5VYS8 1495 aaKnown RBP24.3■■□□□ 1.48
NSF-201ENST00000398238 DCAF8L2P0C7V8 631 aa24.28■■□□□ 1.48
NSF-201ENST00000398238 MYO15BQ96JP2 1530 aa23.59■■□□□ 1.37
NSF-201ENST00000398238 CHIC1Q5VXU3 224 aa23.49■■□□□ 1.35
NSF-201ENST00000398238 DCAF1Q9Y4B6 1507 aa23.42■■□□□ 1.34
NSF-201ENST00000398238 SCRIBQ14160 1630 aa23.14■■□□□ 1.29
NSF-201ENST00000398238 LOC105371045A0A1W2PR82 267 aa23.06■■□□□ 1.28
NSF-201ENST00000398238 ABCC9O60706 1549 aa23.03■■□□□ 1.28
NSF-201ENST00000398238 NACADO15069 1562 aa22.89■■□□□ 1.26
NSF-201ENST00000398238 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
NSF-201ENST00000398238 UNC13AQ9UPW8 1703 aa22.83■■□□□ 1.25
NSF-201ENST00000398238 PCGF6Q9BYE7 350 aa22.79■■□□□ 1.24
NSF-201ENST00000398238 CECR2Q9BXF3 1484 aa22.74■■□□□ 1.23
NSF-201ENST00000398238 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.23
NSF-201ENST00000398238 EHMT2Q96KQ7 1210 aa22.64■■□□□ 1.21
NSF-201ENST00000398238 FAM9AQ8IZU1 332 aaPredicted RBP22.58■■□□□ 1.21
NSF-201ENST00000398238 MROH2BQ7Z745 1585 aa22.56■■□□□ 1.2
NSF-201ENST00000398238 PPARGC1BQ86YN6 1023 aaKnown RBP22.53■■□□□ 1.2
NSF-201ENST00000398238 HRCP23327 699 aa22.52■■□□□ 1.2
NSF-201ENST00000398238 WIZO95785 1651 aa22.45■■□□□ 1.18
NSF-201ENST00000398238 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
NSF-201ENST00000398238 BICRAQ9NZM4 1560 aa22.38■■□□□ 1.17
NSF-201ENST00000398238 PABPN1Q86U42 306 aaKnown RBP eCLIP22.16■■□□□ 1.14
NSF-201ENST00000398238 TRIM26Q12899 539 aaPredicted RBP22.06■■□□□ 1.12
NSF-201ENST00000398238 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
NSF-201ENST00000398238 ABCC8Q09428 1581 aa22.01■■□□□ 1.11
NSF-201ENST00000398238 EIF4G1Q04637 1599 aaKnown RBP21.98■■□□□ 1.11
NSF-201ENST00000398238 SMARCA4P51532 1647 aa21.94■■□□□ 1.1
NSF-201ENST00000398238 CCDC88BA6NC98 1476 aa21.93■■□□□ 1.1
NSF-201ENST00000398238 SMARCA2P51531 1590 aa21.84■■□□□ 1.09
NSF-201ENST00000398238 TOP2AP11388 1531 aaKnown RBP21.83■■□□□ 1.09
NSF-201ENST00000398238 TTBK1Q5TCY1 1321 aaPredicted RBP21.81■■□□□ 1.08
NSF-201ENST00000398238 SOGA1O94964 1423 aa21.77■■□□□ 1.08
NSF-201ENST00000398238 RUSC2Q8N2Y8 1516 aa21.77■■□□□ 1.08
NSF-201ENST00000398238 PEG3Q9GZU2 1588 aa21.67■■□□□ 1.06
NSF-201ENST00000398238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.55■■□□□ 1.04
NSF-201ENST00000398238 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
NSF-201ENST00000398238 ATAD2BQ9ULI0 1458 aa21.43■■□□□ 1.02
NSF-201ENST00000398238 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
NSF-201ENST00000398238 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
NSF-201ENST00000398238 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
NSF-201ENST00000398238 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
NSF-201ENST00000398238 RANGAP1P46060 587 aaPredicted RBP21.38■■□□□ 1.01
NSF-201ENST00000398238 BAZ1BQ9UIG0 1483 aaKnown RBP21.32■■□□□ 1
NSF-201ENST00000398238 TNIKQ9UKE5 1360 aa21.28■■□□□ 1
NSF-201ENST00000398238 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
NSF-201ENST00000398238 ZEB1P37275 1124 aaPredicted RBP21.23■□□□□ 0.99
NSF-201ENST00000398238 HMGXB3Q12766 1538 aa21.19■□□□□ 0.98
NSF-201ENST00000398238 RAPGEF2Q9Y4G8 1499 aa21.17■□□□□ 0.98
NSF-201ENST00000398238 CC2D2AQ9P2K1 1620 aa21.16■□□□□ 0.98
NSF-201ENST00000398238 GOLGA3Q08378 1498 aa21.15■□□□□ 0.98
NSF-201ENST00000398238 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
NSF-201ENST00000398238 EEA1Q15075 1411 aa21.09■□□□□ 0.97
NSF-201ENST00000398238 HNRNPUL2Q1KMD3 747 aaKnown RBP21.05■□□□□ 0.96
NSF-201ENST00000398238 CLIP1P30622 1438 aa21.02■□□□□ 0.96
NSF-201ENST00000398238 CEP164Q9UPV0 1460 aa21.02■□□□□ 0.95
NSF-201ENST00000398238 KIF21BO75037 1637 aa20.98■□□□□ 0.95
NSF-201ENST00000398238 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
NSF-201ENST00000398238 CUX1P39880 1505 aa20.95■□□□□ 0.94
NSF-201ENST00000398238 PRDM2Q13029 1718 aa20.95■□□□□ 0.94
NSF-201ENST00000398238 SCAF1Q9H7N4 1312 aaKnown RBP20.9■□□□□ 0.94
NSF-201ENST00000398238 VPS8Q8N3P4 1428 aa20.86■□□□□ 0.93
NSF-201ENST00000398238 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
NSF-201ENST00000398238 KANK4Q5T7N3 995 aaPredicted RBP20.86■□□□□ 0.93
NSF-201ENST00000398238 PRXQ9BXM0 1461 aa20.8■□□□□ 0.92
NSF-201ENST00000398238 CFTRP13569 1480 aa20.78■□□□□ 0.92
NSF-201ENST00000398238 ARAP1Q96P48 1450 aa20.78■□□□□ 0.92
NSF-201ENST00000398238 DIEXFQ68CQ4 756 aaKnown RBP20.77■□□□□ 0.92
NSF-201ENST00000398238 NEUROD1Q13562 356 aa20.71■□□□□ 0.91
NSF-201ENST00000398238 DNAJC5BQ9UF47 199 aa20.69■□□□□ 0.9
NSF-201ENST00000398238 APLP2Q06481 763 aa20.67■□□□□ 0.9
NSF-201ENST00000398238 KIF27Q86VH2 1401 aa20.63■□□□□ 0.89
NSF-201ENST00000398238 CUX2O14529 1486 aa20.61■□□□□ 0.89
NSF-201ENST00000398238 ERICH3Q5RHP9 1530 aa20.61■□□□□ 0.89
NSF-201ENST00000398238 ARHGAP35Q9NRY4 1499 aa20.61■□□□□ 0.89
NSF-201ENST00000398238 IGF1RP08069 1367 aa20.6■□□□□ 0.89
NSF-201ENST00000398238 ITGAEP38570 1179 aa20.59■□□□□ 0.89
NSF-201ENST00000398238 P3H3Q8IVL6 736 aa20.59■□□□□ 0.89
NSF-201ENST00000398238 NESP48681 1621 aa20.58■□□□□ 0.89
NSF-201ENST00000398238 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.88
NSF-201ENST00000398238 ZNF316A6NFI3 1004 aaPredicted RBP20.56■□□□□ 0.88
NSF-201ENST00000398238 FGD5Q6ZNL6 1462 aa20.55■□□□□ 0.88
NSF-201ENST00000398238 YTHDC1Q96MU7 727 aaKnown RBP20.52■□□□□ 0.88
NSF-201ENST00000398238 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
NSF-201ENST00000398238 MIER1Q8N108 512 aa20.51■□□□□ 0.87
NSF-201ENST00000398238 ACIN1Q9UKV3 1341 aaKnown RBP20.5■□□□□ 0.87
NSF-201ENST00000398238 DHX57Q6P158 1386 aaKnown RBP20.46■□□□□ 0.87
NSF-201ENST00000398238 LAMC3Q9Y6N6 1575 aa20.45■□□□□ 0.86
NSF-201ENST00000398238 CARMIL1Q5VZK9 1371 aa20.44■□□□□ 0.86
NSF-201ENST00000398238 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
NSF-201ENST00000398238 KIF21AQ7Z4S6 1674 aa20.41■□□□□ 0.86
NSF-201ENST00000398238 GTF3C3Q9Y5Q9 886 aa20.4■□□□□ 0.86
NSF-201ENST00000398238 ATP1B4Q9UN42 357 aaPredicted RBP20.39■□□□□ 0.86
NSF-201ENST00000398238 RRBP1Q9P2E9 1410 aaKnown RBP20.35■□□□□ 0.85
NSF-201ENST00000398238 CCNB3Q8WWL7 1395 aa20.32■□□□□ 0.84
NSF-201ENST00000398238 POLA1P09884 1462 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms