RNA–Protein interactions for RNA: ENST00000397149.3

SMU1-201, Transcript of SMU1, DNA replication regulator and spliceosomal factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMU1, Length 7,122 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMU1-201ENST00000397149 DCAF8L2P0C7V8 631 aa21.05■□□□□ 0.96
SMU1-201ENST00000397149 PELP1Q8IZL8 1130 aaKnown RBP20.17■□□□□ 0.82
SMU1-201ENST00000397149 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
SMU1-201ENST00000397149 ERICH6Q7L0X2 663 aa19.77■□□□□ 0.76
SMU1-201ENST00000397149 SUPT5HO00267 1087 aaKnown RBP19.62■□□□□ 0.73
SMU1-201ENST00000397149 MYT1Q01538 1121 aa19.45■□□□□ 0.7
SMU1-201ENST00000397149 TTBK1Q5TCY1 1321 aaPredicted RBP19.37■□□□□ 0.69
SMU1-201ENST00000397149 CCER1Q8TC90 406 aaPredicted RBP19.3■□□□□ 0.68
SMU1-201ENST00000397149 APLP2Q06481 763 aa19.29■□□□□ 0.68
SMU1-201ENST00000397149 FAM9AQ8IZU1 332 aaPredicted RBP19■□□□□ 0.63
SMU1-201ENST00000397149 RANGAP1P46060 587 aaPredicted RBP19■□□□□ 0.63
SMU1-201ENST00000397149 PCGF6Q9BYE7 350 aa18.92■□□□□ 0.62
SMU1-201ENST00000397149 ATP1B4Q9UN42 357 aaPredicted RBP18.89■□□□□ 0.62
SMU1-201ENST00000397149 SHROOM4Q9ULL8 1493 aa18.88■□□□□ 0.61
SMU1-201ENST00000397149 CENPBP07199 599 aaPredicted RBP18.83■□□□□ 0.6
SMU1-201ENST00000397149 YTHDC1Q96MU7 727 aaKnown RBP18.81■□□□□ 0.6
SMU1-201ENST00000397149 NEFLP07196 543 aa18.79■□□□□ 0.6
SMU1-201ENST00000397149 DAXXQ9UER7 740 aaPredicted RBP18.72■□□□□ 0.59
SMU1-201ENST00000397149 POLR3GLQ9BT43 218 aa18.5■□□□□ 0.55
SMU1-201ENST00000397149 CNGB1Q14028 1251 aaPredicted RBP18.5■□□□□ 0.55
SMU1-201ENST00000397149 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
SMU1-201ENST00000397149 MYT1LQ9UL68 1186 aa18.42■□□□□ 0.54
SMU1-201ENST00000397149 SLC4A1APQ9BWU0 796 aaKnown RBP18.29■□□□□ 0.52
SMU1-201ENST00000397149 ZNF316A6NFI3 1004 aaPredicted RBP18.21■□□□□ 0.51
SMU1-201ENST00000397149 CLSPNQ9HAW4 1339 aa18.19■□□□□ 0.5
SMU1-201ENST00000397149 PPARGC1BQ86YN6 1023 aaKnown RBP18.12■□□□□ 0.49
SMU1-201ENST00000397149 UBTFP17480 764 aaKnown RBP18.09■□□□□ 0.49
SMU1-201ENST00000397149 RTL5Q5HYW3 569 aaPredicted RBP18.08■□□□□ 0.48
SMU1-201ENST00000397149 ZEB1P37275 1124 aaPredicted RBP18.08■□□□□ 0.48
SMU1-201ENST00000397149 BCL11AQ9H165 835 aa18.06■□□□□ 0.48
SMU1-201ENST00000397149 ITGAEP38570 1179 aa18.01■□□□□ 0.47
SMU1-201ENST00000397149 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.99■□□□□ 0.47
SMU1-201ENST00000397149 HNRNPUL2Q1KMD3 747 aaKnown RBP17.99■□□□□ 0.47
SMU1-201ENST00000397149 SLC24A1O60721 1099 aa17.9■□□□□ 0.46
SMU1-201ENST00000397149 TRIM41Q8WV44 630 aa17.85■□□□□ 0.45
SMU1-201ENST00000397149 ZBTB47Q9UFB7 747 aaPredicted RBP17.71■□□□□ 0.43
SMU1-201ENST00000397149 BCANQ96GW7 911 aa17.62■□□□□ 0.41
SMU1-201ENST00000397149 NISCHQ9Y2I1 1504 aa17.59■□□□□ 0.41
SMU1-201ENST00000397149 EIF5BO60841 1220 aaKnown RBP17.57■□□□□ 0.4
SMU1-201ENST00000397149 CANXP27824 592 aaKnown RBP17.45■□□□□ 0.38
SMU1-201ENST00000397149 HRCP23327 699 aa17.38■□□□□ 0.37
SMU1-201ENST00000397149 ZNF326Q5BKZ1 582 aaKnown RBP17.35■□□□□ 0.37
SMU1-201ENST00000397149 NPM2Q86SE8 214 aaKnown RBP17.34■□□□□ 0.37
SMU1-201ENST00000397149 CDK11AQ9UQ88 783 aaPredicted RBP17.3■□□□□ 0.36
SMU1-201ENST00000397149 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
SMU1-201ENST00000397149 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
SMU1-201ENST00000397149 ANP32BQ92688 251 aaKnown RBP17.25■□□□□ 0.35
SMU1-201ENST00000397149 ARXQ96QS3 562 aa17.24■□□□□ 0.35
SMU1-201ENST00000397149 HSP90AA1P07900 732 aaKnown RBP17.21■□□□□ 0.35
SMU1-201ENST00000397149 TRIM26Q12899 539 aaPredicted RBP17.21■□□□□ 0.35
SMU1-201ENST00000397149 NEFMP07197 916 aa17.2■□□□□ 0.34
SMU1-201ENST00000397149 FAM50AQ14320 339 aaKnown RBP17.2■□□□□ 0.34
SMU1-201ENST00000397149 PLPPR3Q6T4P5 718 aa17.19■□□□□ 0.34
SMU1-201ENST00000397149 CDK11BP21127 795 aaKnown RBP17.17■□□□□ 0.34
SMU1-201ENST00000397149 DIEXFQ68CQ4 756 aaKnown RBP17.15■□□□□ 0.34
SMU1-201ENST00000397149 TULP1O00294 542 aaPredicted RBP17.12■□□□□ 0.33
SMU1-201ENST00000397149 ANP32AP39687 249 aaKnown RBP17.09■□□□□ 0.33
SMU1-201ENST00000397149 A0A0G2JS52 829 aa17.08■□□□□ 0.32
SMU1-201ENST00000397149 GLIPR1L2Q4G1C9 344 aa17.06■□□□□ 0.32
SMU1-201ENST00000397149 ANP32CO43423 234 aa17.03■□□□□ 0.32
SMU1-201ENST00000397149 GTF3C3Q9Y5Q9 886 aa17.03■□□□□ 0.32
SMU1-201ENST00000397149 NCBP3Q53F19 620 aaKnown RBP17.02■□□□□ 0.31
SMU1-201ENST00000397149 LOC105371045A0A1W2PR82 267 aa16.94■□□□□ 0.3
SMU1-201ENST00000397149 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
SMU1-201ENST00000397149 NBR1Q14596 966 aa16.91■□□□□ 0.3
SMU1-201ENST00000397149 PLEKHG5O94827 1062 aa16.9■□□□□ 0.3
SMU1-201ENST00000397149 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
SMU1-201ENST00000397149 UPF2Q9HAU5 1272 aaKnown RBP16.85■□□□□ 0.29
SMU1-201ENST00000397149 TPRNQ4KMQ1 711 aa16.83■□□□□ 0.29
SMU1-201ENST00000397149 FBLN2P98095 1184 aa16.83■□□□□ 0.28
SMU1-201ENST00000397149 ARID3CA6NKF2 412 aa16.8■□□□□ 0.28
SMU1-201ENST00000397149 CHGAP10645 457 aaKnown RBP16.78■□□□□ 0.28
SMU1-201ENST00000397149 AMER1Q5JTC6 1135 aaPredicted RBP16.76■□□□□ 0.27
SMU1-201ENST00000397149 ESF1Q9H501 851 aaKnown RBP16.75■□□□□ 0.27
SMU1-201ENST00000397149 STAG3Q9UJ98 1225 aa16.75■□□□□ 0.27
SMU1-201ENST00000397149 TAOK2Q9UL54 1235 aa16.75■□□□□ 0.27
SMU1-201ENST00000397149 ZBTB7CA1YPR0 619 aa16.74■□□□□ 0.27
SMU1-201ENST00000397149 SENP3Q9H4L4 574 aaPredicted RBP16.66■□□□□ 0.26
SMU1-201ENST00000397149 FKBP8Q14318 412 aa16.65■□□□□ 0.26
SMU1-201ENST00000397149 ZNF777Q9ULD5 760 aaPredicted RBP16.63■□□□□ 0.25
SMU1-201ENST00000397149 NCLP19338 710 aaKnown RBP16.6■□□□□ 0.25
SMU1-201ENST00000397149 TNNT2P45379 298 aaPredicted RBP16.6■□□□□ 0.25
SMU1-201ENST00000397149 FAM9BQ8IZU0 186 aa16.59■□□□□ 0.25
SMU1-201ENST00000397149 DNTTIP2Q5QJE6 756 aaKnown RBP16.59■□□□□ 0.25
SMU1-201ENST00000397149 TRIM44Q96DX7 344 aaPredicted RBP16.58■□□□□ 0.24
SMU1-201ENST00000397149 PTMAP06454 111 aaKnown RBP16.55■□□□□ 0.24
SMU1-201ENST00000397149 CLSTN1O94985 981 aa16.55■□□□□ 0.24
SMU1-201ENST00000397149 ZRSR1Q15695 479 aaKnown RBP16.54■□□□□ 0.24
SMU1-201ENST00000397149 C14orf37Q86TY3 774 aa16.54■□□□□ 0.24
SMU1-201ENST00000397149 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.52■□□□□ 0.24
SMU1-201ENST00000397149 HNRNPUQ00839 825 aaKnown RBP eCLIP16.49■□□□□ 0.23
SMU1-201ENST00000397149 P3H3Q8IVL6 736 aa16.49■□□□□ 0.23
SMU1-201ENST00000397149 CCDC136Q96JN2 1154 aa16.49■□□□□ 0.23
SMU1-201ENST00000397149 PLCB2Q00722 1185 aa16.48■□□□□ 0.23
SMU1-201ENST00000397149 MYH16Q9H6N6 1097 aa16.48■□□□□ 0.23
SMU1-201ENST00000397149 PRM3Q9NNZ6 103 aa16.48■□□□□ 0.23
SMU1-201ENST00000397149 IRX6P78412 446 aaPredicted RBP16.44■□□□□ 0.22
SMU1-201ENST00000397149 NPHP1O15259 732 aa16.41■□□□□ 0.22
SMU1-201ENST00000397149 RTN4Q9NQC3 1192 aaKnown RBP16.4■□□□□ 0.22
SMU1-201ENST00000397149 HAP1P54257 671 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 981.2 ms