RNA–Protein interactions for RNA: ENST00000397017.6

MCF2L-205, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 3,903 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-205ENST00000397017 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
MCF2L-205ENST00000397017 DCAF8L2P0C7V8 631 aa28.26■■■□□ 2.11
MCF2L-205ENST00000397017 SHROOM4Q9ULL8 1493 aa27.37■■□□□ 1.97
MCF2L-205ENST00000397017 SUPT5HO00267 1087 aaKnown RBP26.93■■□□□ 1.9
MCF2L-205ENST00000397017 ABCC9O60706 1549 aa25.75■■□□□ 1.71
MCF2L-205ENST00000397017 EHMT2Q96KQ7 1210 aa25.58■■□□□ 1.69
MCF2L-205ENST00000397017 ZCCHC6Q5VYS8 1495 aaKnown RBP25.27■■□□□ 1.64
MCF2L-205ENST00000397017 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
MCF2L-205ENST00000397017 FAM9AQ8IZU1 332 aaPredicted RBP25.21■■□□□ 1.63
MCF2L-205ENST00000397017 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.611e-6■■■□□ 17.1
MCF2L-205ENST00000397017 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
MCF2L-205ENST00000397017 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
MCF2L-205ENST00000397017 SCRIBQ14160 1630 aa24.79■■□□□ 1.56
MCF2L-205ENST00000397017 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
MCF2L-205ENST00000397017 TTBK1Q5TCY1 1321 aaPredicted RBP24.5■■□□□ 1.51
MCF2L-205ENST00000397017 RANGAP1P46060 587 aaPredicted RBP24.47■■□□□ 1.51
MCF2L-205ENST00000397017 PCGF6Q9BYE7 350 aa24.38■■□□□ 1.49
MCF2L-205ENST00000397017 PPARGC1BQ86YN6 1023 aaKnown RBP24.27■■□□□ 1.48
MCF2L-205ENST00000397017 DCAF1Q9Y4B6 1507 aa24.16■■□□□ 1.46
MCF2L-205ENST00000397017 UBTFP17480 764 aaKnown RBP24.14■■□□□ 1.45
MCF2L-205ENST00000397017 RB1CC1Q8TDY2 1594 aa24.1■■□□□ 1.45
MCF2L-205ENST00000397017 NACADO15069 1562 aa24.1■■□□□ 1.45
MCF2L-205ENST00000397017 CECR2Q9BXF3 1484 aa24.09■■□□□ 1.45
MCF2L-205ENST00000397017 RSF1Q96T23 1441 aaPredicted RBP24.09■■□□□ 1.45
MCF2L-205ENST00000397017 APLP2Q06481 763 aa23.79■■□□□ 1.4
MCF2L-205ENST00000397017 MYO15BQ96JP2 1530 aa23.79■■□□□ 1.4
MCF2L-205ENST00000397017 ATP1B4Q9UN42 357 aaPredicted RBP23.72■■□□□ 1.39
MCF2L-205ENST00000397017 MROH2BQ7Z745 1585 aa23.71■■□□□ 1.39
MCF2L-205ENST00000397017 TRIM26Q12899 539 aaPredicted RBP23.47■■□□□ 1.35
MCF2L-205ENST00000397017 BAZ1AQ9NRL2 1556 aaPredicted RBP23.45■■□□□ 1.34
MCF2L-205ENST00000397017 WIZO95785 1651 aa23.42■■□□□ 1.34
MCF2L-205ENST00000397017 CSRNP3Q8WYN3 585 aa23.4■■□□□ 1.34
MCF2L-205ENST00000397017 CCER1Q8TC90 406 aaPredicted RBP23.35■■□□□ 1.33
MCF2L-205ENST00000397017 BAZ1BQ9UIG0 1483 aaKnown RBP23.3■■□□□ 1.32
MCF2L-205ENST00000397017 ITGAEP38570 1179 aa23.25■■□□□ 1.31
MCF2L-205ENST00000397017 HNRNPUL2Q1KMD3 747 aaKnown RBP23.24■■□□□ 1.31
MCF2L-205ENST00000397017 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
MCF2L-205ENST00000397017 P3H3Q8IVL6 736 aa23.16■■□□□ 1.3
MCF2L-205ENST00000397017 HRCP23327 699 aa23.16■■□□□ 1.3
MCF2L-205ENST00000397017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.14■■□□□ 1.29
MCF2L-205ENST00000397017 ABCC8Q09428 1581 aa23.13■■□□□ 1.29
MCF2L-205ENST00000397017 WRNQ14191 1432 aaPredicted RBP eCLIP23.06■■□□□ 1.28
MCF2L-205ENST00000397017 SMARCA4P51532 1647 aa23.05■■□□□ 1.28
MCF2L-205ENST00000397017 SOGA1O94964 1423 aa23.03■■□□□ 1.28
MCF2L-205ENST00000397017 FBLN2P98095 1184 aa23■■□□□ 1.27
MCF2L-205ENST00000397017 ATAD2BQ9ULI0 1458 aa22.99■■□□□ 1.27
MCF2L-205ENST00000397017 ARID3CA6NKF2 412 aa22.95■■□□□ 1.26
MCF2L-205ENST00000397017 TOP2AP11388 1531 aaKnown RBP22.94■■□□□ 1.26
MCF2L-205ENST00000397017 ZEB1P37275 1124 aaPredicted RBP22.83■■□□□ 1.24
MCF2L-205ENST00000397017 SMARCA2P51531 1590 aa22.81■■□□□ 1.24
MCF2L-205ENST00000397017 BICRAQ9NZM4 1560 aa22.81■■□□□ 1.24
MCF2L-205ENST00000397017 RUSC2Q8N2Y8 1516 aa22.76■■□□□ 1.23
MCF2L-205ENST00000397017 FAM50AQ14320 339 aaKnown RBP22.74■■□□□ 1.23
MCF2L-205ENST00000397017 CEP162Q5TB80 1403 aa22.71■■□□□ 1.23
MCF2L-205ENST00000397017 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
MCF2L-205ENST00000397017 CLIP1P30622 1438 aa22.64■■□□□ 1.21
MCF2L-205ENST00000397017 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
MCF2L-205ENST00000397017 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
MCF2L-205ENST00000397017 GOLGA3Q08378 1498 aa22.58■■□□□ 1.21
MCF2L-205ENST00000397017 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
MCF2L-205ENST00000397017 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
MCF2L-205ENST00000397017 EEA1Q15075 1411 aa22.53■■□□□ 1.2
MCF2L-205ENST00000397017 TNIKQ9UKE5 1360 aa22.53■■□□□ 1.2
MCF2L-205ENST00000397017 CUX2O14529 1486 aa22.52■■□□□ 1.2
MCF2L-205ENST00000397017 NCAPD3P42695 1498 aa22.46■■□□□ 1.19
MCF2L-205ENST00000397017 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
MCF2L-205ENST00000397017 CEP164Q9UPV0 1460 aa22.46■■□□□ 1.19
MCF2L-205ENST00000397017 YTHDC1Q96MU7 727 aaKnown RBP22.4■■□□□ 1.18
MCF2L-205ENST00000397017 NEUROD1Q13562 356 aa22.38■■□□□ 1.17
MCF2L-205ENST00000397017 CARMIL1Q5VZK9 1371 aa22.37■■□□□ 1.17
MCF2L-205ENST00000397017 RAPGEF2Q9Y4G8 1499 aa22.36■■□□□ 1.17
MCF2L-205ENST00000397017 CHMP7Q8WUX9 453 aaPredicted RBP22.36■■□□□ 1.17
MCF2L-205ENST00000397017 NESP48681 1621 aa22.34■■□□□ 1.17
MCF2L-205ENST00000397017 ERCC6Q03468 1493 aa22.31■■□□□ 1.16
MCF2L-205ENST00000397017 MYT1LQ9UL68 1186 aa22.3■■□□□ 1.16
MCF2L-205ENST00000397017 CC2D2AQ9P2K1 1620 aa22.29■■□□□ 1.16
MCF2L-205ENST00000397017 FANCD2Q9BXW9 1451 aa22.28■■□□□ 1.16
MCF2L-205ENST00000397017 ZNF777Q9ULD5 760 aaPredicted RBP22.27■■□□□ 1.16
MCF2L-205ENST00000397017 KANK4Q5T7N3 995 aaPredicted RBP22.26■■□□□ 1.15
MCF2L-205ENST00000397017 TRIM52Q96A61 297 aa22.26■■□□□ 1.15
MCF2L-205ENST00000397017 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
MCF2L-205ENST00000397017 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
MCF2L-205ENST00000397017 CHIC2Q9UKJ5 165 aa22.22■■□□□ 1.15
MCF2L-205ENST00000397017 RAD54L2Q9Y4B4 1467 aa22.2■■□□□ 1.14
MCF2L-205ENST00000397017 CNGB1Q14028 1251 aaPredicted RBP22.16■■□□□ 1.14
MCF2L-205ENST00000397017 CFTRP13569 1480 aa22.15■■□□□ 1.14
MCF2L-205ENST00000397017 DIEXFQ68CQ4 756 aaKnown RBP22.13■■□□□ 1.13
MCF2L-205ENST00000397017 FGD5Q6ZNL6 1462 aa22.13■■□□□ 1.13
MCF2L-205ENST00000397017 MTUS2Q5JR59 1369 aa22.11■■□□□ 1.13
MCF2L-205ENST00000397017 IGF1RP08069 1367 aa22.08■■□□□ 1.13
MCF2L-205ENST00000397017 POLR3GLQ9BT43 218 aa22.07■■□□□ 1.12
MCF2L-205ENST00000397017 VPS8Q8N3P4 1428 aa22.07■■□□□ 1.12
MCF2L-205ENST00000397017 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
MCF2L-205ENST00000397017 CUX1P39880 1505 aa22.03■■□□□ 1.12
MCF2L-205ENST00000397017 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
MCF2L-205ENST00000397017 RRP7BPQ9NSQ0 103 aa21.98■■□□□ 1.11
MCF2L-205ENST00000397017 FHOD3Q2V2M9 1422 aa21.97■■□□□ 1.11
MCF2L-205ENST00000397017 CDK11AQ9UQ88 783 aaPredicted RBP21.97■■□□□ 1.11
MCF2L-205ENST00000397017 ZNF326Q5BKZ1 582 aaKnown RBP21.96■■□□□ 1.11
MCF2L-205ENST00000397017 KCNH8Q96L42 1107 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms