RNA–Protein interactions for RNA: ENST00000396610.6

CMC1-202, Transcript of C-X9-C motif containing 1, humanhuman

TSL 2

Gene CMC1, Length 593 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-202ENST00000396610 AEBP2Q6ZN18 517 aaPredicted RBP23.02■■□□□ 1.28
CMC1-202ENST00000396610 CHIC1Q5VXU3 224 aa21.88■■□□□ 1.09
CMC1-202ENST00000396610 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
CMC1-202ENST00000396610 PHF23Q9BUL5 403 aaPredicted RBP19.45■□□□□ 0.7
CMC1-202ENST00000396610 FOXD1Q16676 465 aa18.35■□□□□ 0.53
CMC1-202ENST00000396610 PLPPR3Q6T4P5 718 aa17.64■□□□□ 0.41
CMC1-202ENST00000396610 MSH5O43196 834 aa17.3■□□□□ 0.36
CMC1-202ENST00000396610 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
CMC1-202ENST00000396610 PPP6R1Q9UPN7 881 aa17.06■□□□□ 0.32
CMC1-202ENST00000396610 ADRA2BP18089 450 aa17.02■□□□□ 0.32
CMC1-202ENST00000396610 POTEDQ86YR6 584 aa16.9■□□□□ 0.3
CMC1-202ENST00000396610 SCAF1Q9H7N4 1312 aaKnown RBP15.72■□□□□ 0.11
CMC1-202ENST00000396610 MAPK8IP2Q13387 824 aaPredicted RBP15.64■□□□□ 0.09
CMC1-202ENST00000396610 DMRT2Q9Y5R5 561 aa15.64■□□□□ 0.09
CMC1-202ENST00000396610 PPP4R3CPQ6ZMV5 832 aa15.58■□□□□ 0.08
CMC1-202ENST00000396610 KCNA4P22459 653 aa15.34■□□□□ 0.05
CMC1-202ENST00000396610 NCBP3Q53F19 620 aaKnown RBP15.15■□□□□ 0.02
CMC1-202ENST00000396610 CNKSR2Q8WXI2 1034 aa15.1■□□□□ 0.01
CMC1-202ENST00000396610 HOXD11P31277 338 aaPredicted RBP15.04■□□□□ -0
CMC1-202ENST00000396610 DCAF8L1A6NGE4 600 aa15□□□□□ -0.01
CMC1-202ENST00000396610 NPM3O75607 178 aaKnown RBP14.99□□□□□ -0.01
CMC1-202ENST00000396610 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
CMC1-202ENST00000396610 CACNB1Q02641 598 aaPredicted RBP14.85□□□□□ -0.03
CMC1-202ENST00000396610 RNF39Q9H2S5 420 aa14.69□□□□□ -0.06
CMC1-202ENST00000396610 SLC4A1APQ9BWU0 796 aaKnown RBP14.61□□□□□ -0.07
CMC1-202ENST00000396610 DNAJC5BQ9UF47 199 aa14.61□□□□□ -0.07
CMC1-202ENST00000396610 C1QBPQ07021 282 aaKnown RBP14.54□□□□□ -0.08
CMC1-202ENST00000396610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.36□□□□□ -0.111e-6■■■□□ 18.6
CMC1-202ENST00000396610 EHMT2Q96KQ7 1210 aa14.34□□□□□ -0.11
CMC1-202ENST00000396610 ZBTB22O15209 634 aa14.15□□□□□ -0.14
CMC1-202ENST00000396610 SLC4A2P04920 1241 aa14.14□□□□□ -0.15
CMC1-202ENST00000396610 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.16
CMC1-202ENST00000396610 FOXD4L1Q9NU39 408 aa14.08□□□□□ -0.16
CMC1-202ENST00000396610 U3KPZ7 1027 aaPredicted RBP13.99□□□□□ -0.17
CMC1-202ENST00000396610 CAPN15O75808 1086 aa13.83□□□□□ -0.2
CMC1-202ENST00000396610 MYCNP04198 464 aaPredicted RBP13.83□□□□□ -0.2
CMC1-202ENST00000396610 SPINK5Q9NQ38 1064 aaPredicted RBP13.78□□□□□ -0.2
CMC1-202ENST00000396610 APLP2Q06481 763 aa13.75□□□□□ -0.21
CMC1-202ENST00000396610 DSG3P32926 999 aa13.73□□□□□ -0.21
CMC1-202ENST00000396610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
CMC1-202ENST00000396610 HNRNPUL2Q1KMD3 747 aaKnown RBP13.7□□□□□ -0.22
CMC1-202ENST00000396610 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
CMC1-202ENST00000396610 SAMD1Q6SPF0 538 aaPredicted RBP13.6□□□□□ -0.23
CMC1-202ENST00000396610 TRHP20396 242 aaPredicted RBP13.57□□□□□ -0.24
CMC1-202ENST00000396610 ATXN8OSP0DMR3 200 aa13.52□□□□□ -0.25
CMC1-202ENST00000396610 ATF5Q9Y2D1 282 aaPredicted RBP13.49□□□□□ -0.25
CMC1-202ENST00000396610 ABCB7O75027 752 aa13.45□□□□□ -0.26
CMC1-202ENST00000396610 POTEHQ6S545 545 aa13.26□□□□□ -0.29
CMC1-202ENST00000396610 RBM42Q9BTD8 480 aaKnown RBP13.2□□□□□ -0.3
CMC1-202ENST00000396610 POLA2Q14181 598 aa13.18□□□□□ -0.3
CMC1-202ENST00000396610 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
CMC1-202ENST00000396610 MKRN4PQ13434 485 aaPredicted RBP12.91□□□□□ -0.34
CMC1-202ENST00000396610 FBLN2P98095 1184 aa12.87□□□□□ -0.35
CMC1-202ENST00000396610 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
CMC1-202ENST00000396610 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
CMC1-202ENST00000396610 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
CMC1-202ENST00000396610 FKBP8Q14318 412 aa12.74□□□□□ -0.37
CMC1-202ENST00000396610 REM2Q8IYK8 340 aaPredicted RBP12.68□□□□□ -0.38
CMC1-202ENST00000396610 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
CMC1-202ENST00000396610 SPDYE2BA6NHP3 402 aa12.57□□□□□ -0.4
CMC1-202ENST00000396610 SPDYE6P0CI01 402 aa12.57□□□□□ -0.4
CMC1-202ENST00000396610 SPDYE2Q495Y8 402 aa12.57□□□□□ -0.4
CMC1-202ENST00000396610 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
CMC1-202ENST00000396610 PIP4P2Q8N4L2 257 aa12.52□□□□□ -0.41
CMC1-202ENST00000396610 ZNF692Q9BU19 519 aaPredicted RBP12.5□□□□□ -0.41
CMC1-202ENST00000396610 SSUH2Q9Y2M2 353 aa12.48□□□□□ -0.41
CMC1-202ENST00000396610 FXR2P51116 673 aaKnown RBP eCLIP12.46□□□□□ -0.41
CMC1-202ENST00000396610 PROM2Q8N271 834 aa12.44□□□□□ -0.42
CMC1-202ENST00000396610 SP7Q8TDD2 431 aaPredicted RBP12.41□□□□□ -0.42
CMC1-202ENST00000396610 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
CMC1-202ENST00000396610 SPDYE1Q8NFV5 336 aaPredicted RBP12.37□□□□□ -0.43
CMC1-202ENST00000396610 HAX1O00165 279 aa12.34□□□□□ -0.43
CMC1-202ENST00000396610 CLEC11AQ9Y240 323 aa12.31□□□□□ -0.44
CMC1-202ENST00000396610 PRKAR2AP13861 404 aaKnown RBP12.23□□□□□ -0.45
CMC1-202ENST00000396610 FBXO3Q9UK99 471 aa12.2□□□□□ -0.46
CMC1-202ENST00000396610 PRR29P0C7W0 189 aa12.13□□□□□ -0.47
CMC1-202ENST00000396610 STAG3Q9UJ98 1225 aa12.12□□□□□ -0.47
CMC1-202ENST00000396610 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
CMC1-202ENST00000396610 EVX2Q03828 476 aa12.08□□□□□ -0.48
CMC1-202ENST00000396610 C19orf67A6NJJ6 358 aa12.06□□□□□ -0.48
CMC1-202ENST00000396610 CHADLQ6NUI6 762 aa12.04□□□□□ -0.48
CMC1-202ENST00000396610 PLCD3Q8N3E9 789 aa11.96□□□□□ -0.49
CMC1-202ENST00000396610 MIER1Q8N108 512 aa11.94□□□□□ -0.5
CMC1-202ENST00000396610 IFNLR1Q8IU57 520 aaPredicted RBP11.93□□□□□ -0.5
CMC1-202ENST00000396610 FARP1Q9Y4F1 1045 aaPredicted RBP11.9□□□□□ -0.5
CMC1-202ENST00000396610 GABBR2O75899 941 aa11.89□□□□□ -0.51
CMC1-202ENST00000396610 CREBZFQ9NS37 354 aa11.89□□□□□ -0.51
CMC1-202ENST00000396610 PLEKHG5O94827 1062 aa11.85□□□□□ -0.51
CMC1-202ENST00000396610 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
CMC1-202ENST00000396610 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
CMC1-202ENST00000396610 CLCN6P51797 869 aa11.81□□□□□ -0.52
CMC1-202ENST00000396610 MNX1P50219 401 aaPredicted RBP11.78□□□□□ -0.52
CMC1-202ENST00000396610 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
CMC1-202ENST00000396610 SPOCK2Q92563 424 aa11.76□□□□□ -0.53
CMC1-202ENST00000396610 RTN4Q9NQC3 1192 aaKnown RBP11.75□□□□□ -0.53
CMC1-202ENST00000396610 AMER1Q5JTC6 1135 aaPredicted RBP11.73□□□□□ -0.53
CMC1-202ENST00000396610 ZNF579Q8NAF0 562 aaKnown RBP11.67□□□□□ -0.54
CMC1-202ENST00000396610 ZRANB1Q9UGI0 708 aa11.67□□□□□ -0.54
CMC1-202ENST00000396610 NUBP1P53384 320 aa11.66□□□□□ -0.54
CMC1-202ENST00000396610 NPM1P06748 294 aaKnown RBP eCLIP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms