RNA–Protein interactions for RNA: ENST00000396526.7

SNX6-202, Transcript of sorting nexin 6, humanhuman

TSL 1 (best) BASIC

Gene SNX6, Length 3,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-202ENST00000396526 NISCHQ9Y2I1 1504 aa34.79■■■■□ 3.16
SNX6-202ENST00000396526 CCDC180Q9P1Z9 1646 aa29.98■■■□□ 2.39
SNX6-202ENST00000396526 ZCCHC6Q5VYS8 1495 aaKnown RBP29.29■■■□□ 2.28
SNX6-202ENST00000396526 DCAF8L2P0C7V8 631 aa29.01■■■□□ 2.23
SNX6-202ENST00000396526 SHROOM4Q9ULL8 1493 aa28.96■■■□□ 2.23
SNX6-202ENST00000396526 DCAF1Q9Y4B6 1507 aa28.72■■■□□ 2.19
SNX6-202ENST00000396526 SUPT5HO00267 1087 aaKnown RBP28.25■■■□□ 2.11
SNX6-202ENST00000396526 MYO15BQ96JP2 1530 aa28.19■■■□□ 2.1
SNX6-202ENST00000396526 ABCC9O60706 1549 aa28.11■■■□□ 2.09
SNX6-202ENST00000396526 NACADO15069 1562 aa27.93■■■□□ 2.06
SNX6-202ENST00000396526 SCRIBQ14160 1630 aa27.75■■■□□ 2.03
SNX6-202ENST00000396526 RB1CC1Q8TDY2 1594 aa27.59■■■□□ 2.01
SNX6-202ENST00000396526 RSF1Q96T23 1441 aaPredicted RBP27.24■■□□□ 1.95
SNX6-202ENST00000396526 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
SNX6-202ENST00000396526 CECR2Q9BXF3 1484 aa27■■□□□ 1.91
SNX6-202ENST00000396526 MROH2BQ7Z745 1585 aa26.88■■□□□ 1.89
SNX6-202ENST00000396526 BAZ1AQ9NRL2 1556 aaPredicted RBP26.87■■□□□ 1.89
SNX6-202ENST00000396526 UNC13AQ9UPW8 1703 aa26.77■■□□□ 1.88
SNX6-202ENST00000396526 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.87
SNX6-202ENST00000396526 WIZO95785 1651 aa26.65■■□□□ 1.86
SNX6-202ENST00000396526 SMARCA4P51532 1647 aa26.59■■□□□ 1.85
SNX6-202ENST00000396526 BICRAQ9NZM4 1560 aa26.58■■□□□ 1.84
SNX6-202ENST00000396526 TRIM41Q8WV44 630 aa26.54■■□□□ 1.84
SNX6-202ENST00000396526 TOP2AP11388 1531 aaKnown RBP26.43■■□□□ 1.82
SNX6-202ENST00000396526 CCDC88BA6NC98 1476 aa26.22■■□□□ 1.79
SNX6-202ENST00000396526 LOC105371045A0A1W2PR82 267 aa26.2■■□□□ 1.78
SNX6-202ENST00000396526 PEG3Q9GZU2 1588 aa26.18■■□□□ 1.78
SNX6-202ENST00000396526 SMARCA2P51531 1590 aa26.16■■□□□ 1.78
SNX6-202ENST00000396526 ATAD2BQ9ULI0 1458 aa26.1■■□□□ 1.77
SNX6-202ENST00000396526 FAM9AQ8IZU1 332 aaPredicted RBP26.07■■□□□ 1.76
SNX6-202ENST00000396526 BAZ1BQ9UIG0 1483 aaKnown RBP26.06■■□□□ 1.76
SNX6-202ENST00000396526 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
SNX6-202ENST00000396526 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
SNX6-202ENST00000396526 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
SNX6-202ENST00000396526 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
SNX6-202ENST00000396526 WRNQ14191 1432 aaPredicted RBP eCLIP25.71■■□□□ 1.71
SNX6-202ENST00000396526 EHMT2Q96KQ7 1210 aa25.71■■□□□ 1.71
SNX6-202ENST00000396526 PCGF6Q9BYE7 350 aa25.66■■□□□ 1.7
SNX6-202ENST00000396526 EEA1Q15075 1411 aa25.66■■□□□ 1.7
SNX6-202ENST00000396526 CSRNP3Q8WYN3 585 aa25.55■■□□□ 1.68
SNX6-202ENST00000396526 TRIM26Q12899 539 aaPredicted RBP25.52■■□□□ 1.68
SNX6-202ENST00000396526 SOGA1O94964 1423 aa25.5■■□□□ 1.67
SNX6-202ENST00000396526 UBTFP17480 764 aaKnown RBP25.39■■□□□ 1.66
SNX6-202ENST00000396526 SYNJ1O43426 1573 aa25.39■■□□□ 1.65
SNX6-202ENST00000396526 CFTRP13569 1480 aa25.36■■□□□ 1.65
SNX6-202ENST00000396526 TNIKQ9UKE5 1360 aa25.33■■□□□ 1.65
SNX6-202ENST00000396526 CC2D2AQ9P2K1 1620 aa25.32■■□□□ 1.64
SNX6-202ENST00000396526 RUSC2Q8N2Y8 1516 aa25.31■■□□□ 1.64
SNX6-202ENST00000396526 GOLGA3Q08378 1498 aa25.29■■□□□ 1.64
SNX6-202ENST00000396526 HRCP23327 699 aa25.28■■□□□ 1.64
SNX6-202ENST00000396526 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
SNX6-202ENST00000396526 CADPSQ9ULU8 1353 aa25.26■■□□□ 1.63
SNX6-202ENST00000396526 CEP164Q9UPV0 1460 aa25.25■■□□□ 1.63
SNX6-202ENST00000396526 CEP162Q5TB80 1403 aa25.21■■□□□ 1.63
SNX6-202ENST00000396526 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
SNX6-202ENST00000396526 KIF21BO75037 1637 aa25.11■■□□□ 1.61
SNX6-202ENST00000396526 CUX1P39880 1505 aa25.09■■□□□ 1.61
SNX6-202ENST00000396526 KIF27Q86VH2 1401 aa25.07■■□□□ 1.6
SNX6-202ENST00000396526 PRDM2Q13029 1718 aa25.05■■□□□ 1.6
SNX6-202ENST00000396526 PPARGC1BQ86YN6 1023 aaKnown RBP24.98■■□□□ 1.59
SNX6-202ENST00000396526 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
SNX6-202ENST00000396526 CLIP1P30622 1438 aa24.95■■□□□ 1.58
SNX6-202ENST00000396526 RAPGEF2Q9Y4G8 1499 aa24.94■■□□□ 1.58
SNX6-202ENST00000396526 ZEB1P37275 1124 aaPredicted RBP24.9■■□□□ 1.58
SNX6-202ENST00000396526 ERICH3Q5RHP9 1530 aa24.89■■□□□ 1.58
SNX6-202ENST00000396526 APLP2Q06481 763 aa24.89■■□□□ 1.57
SNX6-202ENST00000396526 PRXQ9BXM0 1461 aa24.88■■□□□ 1.57
SNX6-202ENST00000396526 CUX2O14529 1486 aa24.84■■□□□ 1.57
SNX6-202ENST00000396526 FGD5Q6ZNL6 1462 aa24.81■■□□□ 1.56
SNX6-202ENST00000396526 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
SNX6-202ENST00000396526 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
SNX6-202ENST00000396526 PDS5BQ9NTI5 1447 aa24.77■■□□□ 1.56
SNX6-202ENST00000396526 NESP48681 1621 aa24.76■■□□□ 1.55
SNX6-202ENST00000396526 VPS8Q8N3P4 1428 aa24.76■■□□□ 1.55
SNX6-202ENST00000396526 TTBK1Q5TCY1 1321 aaPredicted RBP24.75■■□□□ 1.55
SNX6-202ENST00000396526 DNMBPQ6XZF7 1577 aa24.74■■□□□ 1.55
SNX6-202ENST00000396526 IGF1RP08069 1367 aa24.72■■□□□ 1.55
SNX6-202ENST00000396526 TOPBP1Q92547 1522 aa24.68■■□□□ 1.54
SNX6-202ENST00000396526 CARMIL1Q5VZK9 1371 aa24.68■■□□□ 1.54
SNX6-202ENST00000396526 POLA1P09884 1462 aaPredicted RBP24.61■■□□□ 1.53
SNX6-202ENST00000396526 ABCA10Q8WWZ4 1543 aa24.59■■□□□ 1.53
SNX6-202ENST00000396526 DNAJC5BQ9UF47 199 aa24.56■■□□□ 1.52
SNX6-202ENST00000396526 RAD54L2Q9Y4B4 1467 aa24.55■■□□□ 1.52
SNX6-202ENST00000396526 CCER1Q8TC90 406 aaPredicted RBP24.52■■□□□ 1.52
SNX6-202ENST00000396526 URB2Q14146 1524 aaKnown RBP24.5■■□□□ 1.51
SNX6-202ENST00000396526 ARAP1Q96P48 1450 aa24.46■■□□□ 1.51
SNX6-202ENST00000396526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.42■■□□□ 1.5
SNX6-202ENST00000396526 ARHGAP35Q9NRY4 1499 aa24.4■■□□□ 1.5
SNX6-202ENST00000396526 CUL7Q14999 1698 aa24.37■■□□□ 1.49
SNX6-202ENST00000396526 TDRD9Q8NDG6 1382 aaKnown RBP24.37■■□□□ 1.49
SNX6-202ENST00000396526 GAPVD1Q14C86 1478 aa24.35■■□□□ 1.49
SNX6-202ENST00000396526 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
SNX6-202ENST00000396526 MRC2Q9UBG0 1479 aa24.31■■□□□ 1.48
SNX6-202ENST00000396526 FHAD1B1AJZ9 1412 aa24.31■■□□□ 1.48
SNX6-202ENST00000396526 HNRNPUL2Q1KMD3 747 aaKnown RBP24.31■■□□□ 1.48
SNX6-202ENST00000396526 WDR97A6NE52 1622 aa24.24■■□□□ 1.47
SNX6-202ENST00000396526 KANK4Q5T7N3 995 aaPredicted RBP24.23■■□□□ 1.47
SNX6-202ENST00000396526 ABCA5Q8WWZ7 1642 aa24.22■■□□□ 1.47
SNX6-202ENST00000396526 P3H3Q8IVL6 736 aa24.22■■□□□ 1.47
SNX6-202ENST00000396526 EFCAB5A4FU69 1503 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms