RNA–Protein interactions for RNA: ENST00000395756.5

SREBF1-204, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 3,026 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-204ENST00000395756 NISCHQ9Y2I1 1504 aa38.07■■■■□ 3.69
SREBF1-204ENST00000395756 SHROOM4Q9ULL8 1493 aa32.57■■■□□ 2.8
SREBF1-204ENST00000395756 DCAF8L2P0C7V8 631 aa32.44■■■□□ 2.78
SREBF1-204ENST00000395756 CCDC180Q9P1Z9 1646 aa32.34■■■□□ 2.77
SREBF1-204ENST00000395756 ZCCHC6Q5VYS8 1495 aaKnown RBP32.03■■■□□ 2.72
SREBF1-204ENST00000395756 SUPT5HO00267 1087 aaKnown RBP31.74■■■□□ 2.67
SREBF1-204ENST00000395756 DCAF1Q9Y4B6 1507 aa31.01■■■□□ 2.56
SREBF1-204ENST00000395756 ABCC9O60706 1549 aa30.99■■■□□ 2.55
SREBF1-204ENST00000395756 SCRIBQ14160 1630 aa30.6■■■□□ 2.49
SREBF1-204ENST00000395756 CHIC1Q5VXU3 224 aa30.35■■■□□ 2.45
SREBF1-204ENST00000395756 MYO15BQ96JP2 1530 aa30.29■■■□□ 2.44
SREBF1-204ENST00000395756 NACADO15069 1562 aa30.2■■■□□ 2.43
SREBF1-204ENST00000395756 RSF1Q96T23 1441 aaPredicted RBP30.03■■■□□ 2.4
SREBF1-204ENST00000395756 CECR2Q9BXF3 1484 aa29.91■■■□□ 2.38
SREBF1-204ENST00000395756 RB1CC1Q8TDY2 1594 aa29.88■■■□□ 2.37
SREBF1-204ENST00000395756 PABPN1Q86U42 306 aaKnown RBP eCLIP29.73■■■□□ 2.35
SREBF1-204ENST00000395756 MROH2BQ7Z745 1585 aa29.66■■■□□ 2.34
SREBF1-204ENST00000395756 LOC105371045A0A1W2PR82 267 aa29.63■■■□□ 2.33
SREBF1-204ENST00000395756 TRIM41Q8WV44 630 aa29.48■■■□□ 2.31
SREBF1-204ENST00000395756 FAM9AQ8IZU1 332 aaPredicted RBP29.43■■■□□ 2.3
SREBF1-204ENST00000395756 WIZO95785 1651 aa29.42■■■□□ 2.3
SREBF1-204ENST00000395756 EHMT2Q96KQ7 1210 aa29.37■■■□□ 2.29
SREBF1-204ENST00000395756 BAZ1AQ9NRL2 1556 aaPredicted RBP29.25■■■□□ 2.27
SREBF1-204ENST00000395756 UNC13AQ9UPW8 1703 aa29.25■■■□□ 2.27
SREBF1-204ENST00000395756 BICRAQ9NZM4 1560 aa29.06■■■□□ 2.24
SREBF1-204ENST00000395756 SMARCA4P51532 1647 aa29.05■■■□□ 2.24
SREBF1-204ENST00000395756 PCGF6Q9BYE7 350 aa29.04■■■□□ 2.24
SREBF1-204ENST00000395756 CCDC88BA6NC98 1476 aa28.9■■■□□ 2.22
SREBF1-204ENST00000395756 TOP2AP11388 1531 aaKnown RBP28.86■■■□□ 2.21
SREBF1-204ENST00000395756 SMARCA2P51531 1590 aa28.71■■■□□ 2.19
SREBF1-204ENST00000395756 ABCC8Q09428 1581 aa28.69■■■□□ 2.18
SREBF1-204ENST00000395756 ATAD2BQ9ULI0 1458 aa28.57■■■□□ 2.16
SREBF1-204ENST00000395756 EIF4G1Q04637 1599 aaKnown RBP28.52■■■□□ 2.16
SREBF1-204ENST00000395756 PPARGC1BQ86YN6 1023 aaKnown RBP28.5■■■□□ 2.15
SREBF1-204ENST00000395756 BAZ1BQ9UIG0 1483 aaKnown RBP28.49■■■□□ 2.15
SREBF1-204ENST00000395756 TRIM26Q12899 539 aaPredicted RBP28.4■■■□□ 2.14
SREBF1-204ENST00000395756 HRCP23327 699 aa28.4■■■□□ 2.14
SREBF1-204ENST00000395756 SOGA1O94964 1423 aa28.38■■■□□ 2.13
SREBF1-204ENST00000395756 PEG3Q9GZU2 1588 aa28.37■■■□□ 2.13
SREBF1-204ENST00000395756 RUSC2Q8N2Y8 1516 aa28.27■■■□□ 2.12
SREBF1-204ENST00000395756 WRNQ14191 1432 aaPredicted RBP eCLIP28.26■■■□□ 2.11
SREBF1-204ENST00000395756 UBTFP17480 764 aaKnown RBP28.25■■■□□ 2.11
SREBF1-204ENST00000395756 CSRNP3Q8WYN3 585 aa28.23■■■□□ 2.11
SREBF1-204ENST00000395756 TTBK1Q5TCY1 1321 aaPredicted RBP28.22■■■□□ 2.11
SREBF1-204ENST00000395756 RANGAP1P46060 587 aaPredicted RBP28.07■■■□□ 2.08
SREBF1-204ENST00000395756 NCAPD3P42695 1498 aa28.05■■■□□ 2.08
SREBF1-204ENST00000395756 SYNJ1O43426 1573 aa28.02■■■□□ 2.08
SREBF1-204ENST00000395756 CEP162Q5TB80 1403 aa27.92■■■□□ 2.06
SREBF1-204ENST00000395756 EEA1Q15075 1411 aa27.88■■■□□ 2.05
SREBF1-204ENST00000395756 HMGXB3Q12766 1538 aa27.86■■■□□ 2.05
SREBF1-204ENST00000395756 TNIKQ9UKE5 1360 aa27.85■■■□□ 2.05
SREBF1-204ENST00000395756 GOLGA3Q08378 1498 aa27.77■■■□□ 2.04
SREBF1-204ENST00000395756 CFTRP13569 1480 aa27.69■■■□□ 2.02
SREBF1-204ENST00000395756 CC2D2AQ9P2K1 1620 aa27.68■■■□□ 2.02
SREBF1-204ENST00000395756 CEP164Q9UPV0 1460 aa27.66■■■□□ 2.02
SREBF1-204ENST00000395756 RAPGEF2Q9Y4G8 1499 aa27.65■■■□□ 2.02
SREBF1-204ENST00000395756 TOP2BQ02880 1626 aa27.63■■■□□ 2.01
SREBF1-204ENST00000395756 CUX1P39880 1505 aa27.61■■■□□ 2.01
SREBF1-204ENST00000395756 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
SREBF1-204ENST00000395756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.6■■■□□ 2.01
SREBF1-204ENST00000395756 PELP1Q8IZL8 1130 aaKnown RBP27.6■■■□□ 2.01
SREBF1-204ENST00000395756 CLIP1P30622 1438 aa27.55■■■□□ 2
SREBF1-204ENST00000395756 DNAJC5BQ9UF47 199 aa27.55■■■□□ 2
SREBF1-204ENST00000395756 CCER1Q8TC90 406 aaPredicted RBP27.46■■□□□ 1.99
SREBF1-204ENST00000395756 APLP2Q06481 763 aa27.45■■□□□ 1.99
SREBF1-204ENST00000395756 KIF21BO75037 1637 aa27.44■■□□□ 1.98
SREBF1-204ENST00000395756 BIVM-ERCC5R4GMW8 1640 aa27.44■■□□□ 1.98
SREBF1-204ENST00000395756 KIF27Q86VH2 1401 aa27.44■■□□□ 1.98
SREBF1-204ENST00000395756 ZEB1P37275 1124 aaPredicted RBP27.42■■□□□ 1.98
SREBF1-204ENST00000395756 NESP48681 1621 aa27.4■■□□□ 1.98
SREBF1-204ENST00000395756 CUX2O14529 1486 aa27.35■■□□□ 1.97
SREBF1-204ENST00000395756 HNRNPUL2Q1KMD3 747 aaKnown RBP27.32■■□□□ 1.96
SREBF1-204ENST00000395756 FANCD2Q9BXW9 1451 aa27.32■■□□□ 1.96
SREBF1-204ENST00000395756 PRXQ9BXM0 1461 aa27.31■■□□□ 1.96
SREBF1-204ENST00000395756 FGD5Q6ZNL6 1462 aa27.27■■□□□ 1.96
SREBF1-204ENST00000395756 VPS8Q8N3P4 1428 aa27.26■■□□□ 1.95
SREBF1-204ENST00000395756 IGF1RP08069 1367 aa27.23■■□□□ 1.95
SREBF1-204ENST00000395756 RAD54L2Q9Y4B4 1467 aa27.18■■□□□ 1.94
SREBF1-204ENST00000395756 P3H3Q8IVL6 736 aa27.15■■□□□ 1.94
SREBF1-204ENST00000395756 CARMIL1Q5VZK9 1371 aa27.14■■□□□ 1.94
SREBF1-204ENST00000395756 ERICH3Q5RHP9 1530 aa27.12■■□□□ 1.93
SREBF1-204ENST00000395756 KANK4Q5T7N3 995 aaPredicted RBP27.11■■□□□ 1.93
SREBF1-204ENST00000395756 ATP1B4Q9UN42 357 aaPredicted RBP27.07■■□□□ 1.92
SREBF1-204ENST00000395756 ARAP1Q96P48 1450 aa27.07■■□□□ 1.92
SREBF1-204ENST00000395756 PRDM2Q13029 1718 aa27.05■■□□□ 1.92
SREBF1-204ENST00000395756 TOPBP1Q92547 1522 aa27.02■■□□□ 1.92
SREBF1-204ENST00000395756 POLA1P09884 1462 aaPredicted RBP27■■□□□ 1.91
SREBF1-204ENST00000395756 TDRD9Q8NDG6 1382 aaKnown RBP26.99■■□□□ 1.91
SREBF1-204ENST00000395756 ARHGAP35Q9NRY4 1499 aa26.95■■□□□ 1.9
SREBF1-204ENST00000395756 ITGAEP38570 1179 aa26.92■■□□□ 1.9
SREBF1-204ENST00000395756 DNMBPQ6XZF7 1577 aa26.92■■□□□ 1.9
SREBF1-204ENST00000395756 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
SREBF1-204ENST00000395756 PDS5BQ9NTI5 1447 aa26.9■■□□□ 1.9
SREBF1-204ENST00000395756 LAMC3Q9Y6N6 1575 aa26.85■■□□□ 1.89
SREBF1-204ENST00000395756 ABCA10Q8WWZ4 1543 aa26.82■■□□□ 1.88
SREBF1-204ENST00000395756 MYT1Q01538 1121 aa26.76■■□□□ 1.87
SREBF1-204ENST00000395756 FHOD3Q2V2M9 1422 aa26.71■■□□□ 1.87
SREBF1-204ENST00000395756 GAPVD1Q14C86 1478 aa26.66■■□□□ 1.86
SREBF1-204ENST00000395756 KIF21AQ7Z4S6 1674 aa26.65■■□□□ 1.86
SREBF1-204ENST00000395756 FAM50AQ14320 339 aaKnown RBP26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms