RNA–Protein interactions for RNA: ENST00000394888.8

CPSF7-202, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS P4 TSL 2 BASIC

Gene CPSF7, Length 3,650 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-202ENST00000394888 NISCHQ9Y2I1 1504 aa33.59■■■□□ 2.97
CPSF7-202ENST00000394888 CCDC180Q9P1Z9 1646 aa28.91■■■□□ 2.22
CPSF7-202ENST00000394888 ZCCHC6Q5VYS8 1495 aaKnown RBP28.46■■■□□ 2.15
CPSF7-202ENST00000394888 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
CPSF7-202ENST00000394888 DCAF1Q9Y4B6 1507 aa27.72■■■□□ 2.03
CPSF7-202ENST00000394888 SUPT5HO00267 1087 aaKnown RBP27.1■■□□□ 1.93
CPSF7-202ENST00000394888 MYO15BQ96JP2 1530 aa27.02■■□□□ 1.92
CPSF7-202ENST00000394888 DCAF8L2P0C7V8 631 aa26.99■■□□□ 1.91
CPSF7-202ENST00000394888 ABCC9O60706 1549 aa26.86■■□□□ 1.89
CPSF7-202ENST00000394888 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
CPSF7-202ENST00000394888 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
CPSF7-202ENST00000394888 NACADO15069 1562 aa26.55■■□□□ 1.84
CPSF7-202ENST00000394888 RSF1Q96T23 1441 aaPredicted RBP26.41■■□□□ 1.82
CPSF7-202ENST00000394888 RB1CC1Q8TDY2 1594 aa26.23■■□□□ 1.79
CPSF7-202ENST00000394888 UNC13AQ9UPW8 1703 aa26.22■■□□□ 1.79
CPSF7-202ENST00000394888 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
CPSF7-202ENST00000394888 MROH2BQ7Z745 1585 aa26.11■■□□□ 1.77
CPSF7-202ENST00000394888 WIZO95785 1651 aa26.03■■□□□ 1.76
CPSF7-202ENST00000394888 EIF4G1Q04637 1599 aaKnown RBP25.9■■□□□ 1.74
CPSF7-202ENST00000394888 BAZ1AQ9NRL2 1556 aaPredicted RBP25.88■■□□□ 1.73
CPSF7-202ENST00000394888 BICRAQ9NZM4 1560 aa25.73■■□□□ 1.71
CPSF7-202ENST00000394888 SMARCA4P51532 1647 aa25.71■■□□□ 1.71
CPSF7-202ENST00000394888 LOC105371045A0A1W2PR82 267 aa25.66■■□□□ 1.7
CPSF7-202ENST00000394888 TOP2AP11388 1531 aaKnown RBP25.56■■□□□ 1.68
CPSF7-202ENST00000394888 SMARCA2P51531 1590 aa25.48■■□□□ 1.67
CPSF7-202ENST00000394888 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.65
CPSF7-202ENST00000394888 CCDC88BA6NC98 1476 aa25.35■■□□□ 1.65
CPSF7-202ENST00000394888 TRIM41Q8WV44 630 aa25.29■■□□□ 1.64
CPSF7-202ENST00000394888 ABCC8Q09428 1581 aa25.23■■□□□ 1.63
CPSF7-202ENST00000394888 HRCP23327 699 aa25.23■■□□□ 1.63
CPSF7-202ENST00000394888 PCGF6Q9BYE7 350 aa25.19■■□□□ 1.62
CPSF7-202ENST00000394888 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.615e-8■■■□□ 16.1
CPSF7-202ENST00000394888 FAM9AQ8IZU1 332 aaPredicted RBP24.98■■□□□ 1.59
CPSF7-202ENST00000394888 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
CPSF7-202ENST00000394888 TRIM26Q12899 539 aaPredicted RBP24.87■■□□□ 1.57
CPSF7-202ENST00000394888 SYNJ1O43426 1573 aa24.85■■□□□ 1.57
CPSF7-202ENST00000394888 SOGA1O94964 1423 aa24.84■■□□□ 1.57
CPSF7-202ENST00000394888 RUSC2Q8N2Y8 1516 aa24.84■■□□□ 1.57
CPSF7-202ENST00000394888 PPARGC1BQ86YN6 1023 aaKnown RBP24.75■■□□□ 1.55
CPSF7-202ENST00000394888 BAZ1BQ9UIG0 1483 aaKnown RBP24.74■■□□□ 1.55
CPSF7-202ENST00000394888 EHMT2Q96KQ7 1210 aa24.66■■□□□ 1.54
CPSF7-202ENST00000394888 WRNQ14191 1432 aaPredicted RBP eCLIP24.64■■□□□ 1.54
CPSF7-202ENST00000394888 HMGXB3Q12766 1538 aa24.63■■□□□ 1.53
CPSF7-202ENST00000394888 BIVM-ERCC5R4GMW8 1640 aa24.6■■□□□ 1.53
CPSF7-202ENST00000394888 EEA1Q15075 1411 aa24.57■■□□□ 1.52
CPSF7-202ENST00000394888 TOP2BQ02880 1626 aa24.56■■□□□ 1.52
CPSF7-202ENST00000394888 KIF21BO75037 1637 aa24.55■■□□□ 1.52
CPSF7-202ENST00000394888 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
CPSF7-202ENST00000394888 CEP162Q5TB80 1403 aa24.53■■□□□ 1.52
CPSF7-202ENST00000394888 TNIKQ9UKE5 1360 aa24.51■■□□□ 1.51
CPSF7-202ENST00000394888 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
CPSF7-202ENST00000394888 GOLGA3Q08378 1498 aa24.4■■□□□ 1.5
CPSF7-202ENST00000394888 CSRNP3Q8WYN3 585 aa24.39■■□□□ 1.49
CPSF7-202ENST00000394888 CUX1P39880 1505 aa24.35■■□□□ 1.49
CPSF7-202ENST00000394888 CEP164Q9UPV0 1460 aa24.3■■□□□ 1.48
CPSF7-202ENST00000394888 CFTRP13569 1480 aa24.29■■□□□ 1.48
CPSF7-202ENST00000394888 RAPGEF2Q9Y4G8 1499 aa24.27■■□□□ 1.48
CPSF7-202ENST00000394888 PRXQ9BXM0 1461 aa24.16■■□□□ 1.46
CPSF7-202ENST00000394888 ERICH3Q5RHP9 1530 aa24.14■■□□□ 1.46
CPSF7-202ENST00000394888 CC2D2AQ9P2K1 1620 aa24.11■■□□□ 1.45
CPSF7-202ENST00000394888 ZEB1P37275 1124 aaPredicted RBP24.03■■□□□ 1.44
CPSF7-202ENST00000394888 CLIP1P30622 1438 aa24.03■■□□□ 1.44
CPSF7-202ENST00000394888 VPS8Q8N3P4 1428 aa24.01■■□□□ 1.43
CPSF7-202ENST00000394888 UBTFP17480 764 aaKnown RBP24■■□□□ 1.43
CPSF7-202ENST00000394888 ARAP1Q96P48 1450 aa23.98■■□□□ 1.43
CPSF7-202ENST00000394888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.42
CPSF7-202ENST00000394888 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
CPSF7-202ENST00000394888 KIF27Q86VH2 1401 aa23.82■■□□□ 1.4
CPSF7-202ENST00000394888 TTBK1Q5TCY1 1321 aaPredicted RBP23.81■■□□□ 1.4
CPSF7-202ENST00000394888 FGD5Q6ZNL6 1462 aa23.8■■□□□ 1.4
CPSF7-202ENST00000394888 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
CPSF7-202ENST00000394888 ARHGAP35Q9NRY4 1499 aa23.76■■□□□ 1.39
CPSF7-202ENST00000394888 IGF1RP08069 1367 aa23.73■■□□□ 1.39
CPSF7-202ENST00000394888 DNMBPQ6XZF7 1577 aa23.7■■□□□ 1.39
CPSF7-202ENST00000394888 NESP48681 1621 aa23.7■■□□□ 1.38
CPSF7-202ENST00000394888 FANCD2Q9BXW9 1451 aa23.7■■□□□ 1.38
CPSF7-202ENST00000394888 CUX2O14529 1486 aa23.69■■□□□ 1.38
CPSF7-202ENST00000394888 TOPBP1Q92547 1522 aa23.62■■□□□ 1.37
CPSF7-202ENST00000394888 CCER1Q8TC90 406 aaPredicted RBP23.62■■□□□ 1.37
CPSF7-202ENST00000394888 ABCA10Q8WWZ4 1543 aa23.59■■□□□ 1.37
CPSF7-202ENST00000394888 POLA1P09884 1462 aaPredicted RBP23.59■■□□□ 1.37
CPSF7-202ENST00000394888 LAMC3Q9Y6N6 1575 aa23.56■■□□□ 1.36
CPSF7-202ENST00000394888 KANK4Q5T7N3 995 aaPredicted RBP23.56■■□□□ 1.36
CPSF7-202ENST00000394888 RAD54L2Q9Y4B4 1467 aa23.56■■□□□ 1.36
CPSF7-202ENST00000394888 URB2Q14146 1524 aaKnown RBP23.55■■□□□ 1.36
CPSF7-202ENST00000394888 KIF21AQ7Z4S6 1674 aa23.53■■□□□ 1.36
CPSF7-202ENST00000394888 RRBP1Q9P2E9 1410 aaKnown RBP23.52■■□□□ 1.36
CPSF7-202ENST00000394888 CTTNBP2Q8WZ74 1663 aa23.52■■□□□ 1.36
CPSF7-202ENST00000394888 CFAP43Q8NDM7 1665 aa23.52■■□□□ 1.36
CPSF7-202ENST00000394888 ABCA5Q8WWZ7 1642 aa23.52■■□□□ 1.36
CPSF7-202ENST00000394888 RANGAP1P46060 587 aaPredicted RBP23.49■■□□□ 1.35
CPSF7-202ENST00000394888 TIAM1Q13009 1591 aa23.49■■□□□ 1.35
CPSF7-202ENST00000394888 CUL7Q14999 1698 aa23.49■■□□□ 1.35
CPSF7-202ENST00000394888 MAP3K1Q13233 1512 aa23.47■■□□□ 1.35
CPSF7-202ENST00000394888 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
CPSF7-202ENST00000394888 DNAJC5BQ9UF47 199 aa23.46■■□□□ 1.35
CPSF7-202ENST00000394888 LRRIQ1Q96JM4 1722 aa23.46■■□□□ 1.35
CPSF7-202ENST00000394888 PCF11O94913 1555 aaKnown RBP23.44■■□□□ 1.34
CPSF7-202ENST00000394888 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.34
CPSF7-202ENST00000394888 HNRNPUL2Q1KMD3 747 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms