RNA–Protein interactions for RNA: ENST00000394888.8

CPSF7-202, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

APPRIS P4 TSL 2 BASIC

Gene CPSF7, Length 3,650 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-202ENST00000394888 SAMD9Q5K651 1589 aa23.32■■□□□ 1.32
CPSF7-202ENST00000394888 DHX57Q6P158 1386 aaKnown RBP23.3■■□□□ 1.32
CPSF7-202ENST00000394888 LRRC9Q6ZRR7 1453 aa23.3■■□□□ 1.32
CPSF7-202ENST00000394888 EFCAB5A4FU69 1503 aa23.28■■□□□ 1.32
CPSF7-202ENST00000394888 PBRM1Q86U86 1689 aa23.25■■□□□ 1.31
CPSF7-202ENST00000394888 SNAPC4Q5SXM2 1469 aa23.25■■□□□ 1.31
CPSF7-202ENST00000394888 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.312e-7■■■■■ 40.5
CPSF7-202ENST00000394888 CCNB3Q8WWL7 1395 aa23.21■■□□□ 1.31
CPSF7-202ENST00000394888 FYCO1Q9BQS8 1478 aa23.2■■□□□ 1.3
CPSF7-202ENST00000394888 APLP2Q06481 763 aa23.2■■□□□ 1.3
CPSF7-202ENST00000394888 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
CPSF7-202ENST00000394888 FHOD3Q2V2M9 1422 aa23.19■■□□□ 1.3
CPSF7-202ENST00000394888 MAPKBP1O60336 1514 aa23.18■■□□□ 1.3
CPSF7-202ENST00000394888 CASKIN1Q8WXD9 1431 aa23.14■■□□□ 1.29
CPSF7-202ENST00000394888 DIEXFQ68CQ4 756 aaKnown RBP23.14■■□□□ 1.29
CPSF7-202ENST00000394888 GAPVD1Q14C86 1478 aa23.14■■□□□ 1.29
CPSF7-202ENST00000394888 SCAF1Q9H7N4 1312 aaKnown RBP23.13■■□□□ 1.29
CPSF7-202ENST00000394888 FHAD1B1AJZ9 1412 aa23.12■■□□□ 1.29
CPSF7-202ENST00000394888 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
CPSF7-202ENST00000394888 TDRD9Q8NDG6 1382 aaKnown RBP23.1■■□□□ 1.29
CPSF7-202ENST00000394888 ZNF316A6NFI3 1004 aaPredicted RBP23.1■■□□□ 1.29
CPSF7-202ENST00000394888 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
CPSF7-202ENST00000394888 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
CPSF7-202ENST00000394888 ADAMTS12P58397 1594 aa23.07■■□□□ 1.28
CPSF7-202ENST00000394888 MAGI3Q5TCQ9 1506 aa23.02■■□□□ 1.28
CPSF7-202ENST00000394888 THOC2Q8NI27 1593 aaKnown RBP23.01■■□□□ 1.27
CPSF7-202ENST00000394888 ARHGEF11O15085 1522 aa22.99■■□□□ 1.27
CPSF7-202ENST00000394888 RAB3GAP2Q9H2M9 1393 aa22.99■■□□□ 1.27
CPSF7-202ENST00000394888 P3H3Q8IVL6 736 aa22.98■■□□□ 1.27
CPSF7-202ENST00000394888 WDR62O43379 1518 aa22.97■■□□□ 1.27
CPSF7-202ENST00000394888 MRC2Q9UBG0 1479 aa22.95■■□□□ 1.26
CPSF7-202ENST00000394888 NEUROD1Q13562 356 aa22.93■■□□□ 1.26
CPSF7-202ENST00000394888 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.93■■□□□ 1.261e-11■■□□□ 12.1
CPSF7-202ENST00000394888 FMN1Q68DA7 1419 aa22.92■■□□□ 1.26
CPSF7-202ENST00000394888 PTPRKQ15262 1439 aa22.89■■□□□ 1.26
CPSF7-202ENST00000394888 IQGAP2Q13576 1575 aa22.89■■□□□ 1.25
CPSF7-202ENST00000394888 ZNF608Q9ULD9 1512 aaPredicted RBP22.88■■□□□ 1.25
CPSF7-202ENST00000394888 SETD5Q9C0A6 1442 aa22.88■■□□□ 1.25
CPSF7-202ENST00000394888 UGGT2Q9NYU1 1516 aa22.86■■□□□ 1.25
CPSF7-202ENST00000394888 SUPT6HQ7KZ85 1726 aaKnown RBP22.86■■□□□ 1.25
CPSF7-202ENST00000394888 FGD6Q6ZV73 1430 aa22.86■■□□□ 1.25
CPSF7-202ENST00000394888 ACIN1Q9UKV3 1341 aaKnown RBP22.86■■□□□ 1.25
CPSF7-202ENST00000394888 EIF4G3O43432 1585 aaKnown RBP22.83■■□□□ 1.25
CPSF7-202ENST00000394888 MIER1Q8N108 512 aa22.82■■□□□ 1.24
CPSF7-202ENST00000394888 EHBP1L1Q8N3D4 1523 aa22.82■■□□□ 1.24
CPSF7-202ENST00000394888 PTPN23Q9H3S7 1636 aa22.81■■□□□ 1.24
CPSF7-202ENST00000394888 NCOA2Q15596 1464 aa22.8■■□□□ 1.24
CPSF7-202ENST00000394888 HECW1Q76N89 1606 aa22.77■■□□□ 1.24
CPSF7-202ENST00000394888 DISP1Q96F81 1524 aa22.75■■□□□ 1.23
CPSF7-202ENST00000394888 ITGAEP38570 1179 aa22.75■■□□□ 1.23
CPSF7-202ENST00000394888 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
CPSF7-202ENST00000394888 GCC2Q8IWJ2 1684 aa22.75■■□□□ 1.23
CPSF7-202ENST00000394888 KIAA0556O60303 1618 aa22.74■■□□□ 1.23
CPSF7-202ENST00000394888 TCOF1Q13428 1488 aaKnown RBP22.73■■□□□ 1.23
CPSF7-202ENST00000394888 KDM5BQ9UGL1 1544 aa22.73■■□□□ 1.23
CPSF7-202ENST00000394888 MYOM3Q5VTT5 1437 aa22.72■■□□□ 1.23
CPSF7-202ENST00000394888 DENND4BO75064 1496 aaPredicted RBP22.72■■□□□ 1.23
CPSF7-202ENST00000394888 KDM6BO15054 1643 aa22.72■■□□□ 1.23
CPSF7-202ENST00000394888 EPRSP07814 1512 aaKnown RBP22.71■■□□□ 1.23
CPSF7-202ENST00000394888 CDK13Q14004 1512 aaKnown RBP22.71■■□□□ 1.23
CPSF7-202ENST00000394888 CCDC18Q5T9S5 1454 aa22.7■■□□□ 1.22
CPSF7-202ENST00000394888 HFM1A2PYH4 1435 aa22.69■■□□□ 1.22
CPSF7-202ENST00000394888 CEP170Q5SW79 1584 aa22.67■■□□□ 1.22
CPSF7-202ENST00000394888 NAIPQ13075 1403 aa22.66■■□□□ 1.22
CPSF7-202ENST00000394888 FAM50AQ14320 339 aaKnown RBP22.63■■□□□ 1.21
CPSF7-202ENST00000394888 GRIN2AQ12879 1464 aa22.63■■□□□ 1.21
CPSF7-202ENST00000394888 MTUS2Q5JR59 1369 aa22.61■■□□□ 1.21
CPSF7-202ENST00000394888 KIAA0586Q9BVV6 1533 aa22.6■■□□□ 1.21
CPSF7-202ENST00000394888 RAPGEF6Q8TEU7 1601 aa22.59■■□□□ 1.21
CPSF7-202ENST00000394888 NUP153P49790 1475 aaKnown RBP22.59■■□□□ 1.21
CPSF7-202ENST00000394888 SIN3AQ96ST3 1273 aa22.58■■□□□ 1.21
CPSF7-202ENST00000394888 ATP1B4Q9UN42 357 aaPredicted RBP22.58■■□□□ 1.21
CPSF7-202ENST00000394888 UACAQ9BZF9 1416 aa22.55■■□□□ 1.2
CPSF7-202ENST00000394888 ADCY10Q96PN6 1610 aa22.51■■□□□ 1.19
CPSF7-202ENST00000394888 GTF3C3Q9Y5Q9 886 aa22.51■■□□□ 1.19
CPSF7-202ENST00000394888 MAGI1Q96QZ7 1491 aaPredicted RBP22.5■■□□□ 1.19
CPSF7-202ENST00000394888 AKNAQ7Z591 1439 aa22.5■■□□□ 1.19
CPSF7-202ENST00000394888 DNMT1P26358 1616 aaKnown RBP22.5■■□□□ 1.19
CPSF7-202ENST00000394888 MIA2Q96PC5 1412 aa22.46■■□□□ 1.19
CPSF7-202ENST00000394888 CROCC2H7BZ55 1655 aa22.45■■□□□ 1.18
CPSF7-202ENST00000394888 SYNJ2O15056 1496 aa22.45■■□□□ 1.18
CPSF7-202ENST00000394888 KIF14Q15058 1648 aa22.44■■□□□ 1.18
CPSF7-202ENST00000394888 NUP160Q12769 1436 aa22.44■■□□□ 1.18
CPSF7-202ENST00000394888 CENPBP07199 599 aaPredicted RBP22.43■■□□□ 1.18
CPSF7-202ENST00000394888 YTHDC1Q96MU7 727 aaKnown RBP22.39■■□□□ 1.18
CPSF7-202ENST00000394888 PPP1R15AO75807 674 aaPredicted RBP22.38■■□□□ 1.17
CPSF7-202ENST00000394888 TIMELESSQ9UNS1 1208 aa22.38■■□□□ 1.17
CPSF7-202ENST00000394888 PLB1Q6P1J6 1458 aa22.36■■□□□ 1.17
CPSF7-202ENST00000394888 ABCA8O94911 1581 aa22.36■■□□□ 1.17
CPSF7-202ENST00000394888 CDC42BPAQ5VT25 1732 aa22.36■■□□□ 1.17
CPSF7-202ENST00000394888 ADGBQ8N7X0 1667 aa22.35■■□□□ 1.17
CPSF7-202ENST00000394888 DAPK1P53355 1430 aa22.34■■□□□ 1.17
CPSF7-202ENST00000394888 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
CPSF7-202ENST00000394888 ABCC5O15440 1437 aa22.33■■□□□ 1.17
CPSF7-202ENST00000394888 ITSN2Q9NZM3 1697 aa22.33■■□□□ 1.17
CPSF7-202ENST00000394888 KCNH8Q96L42 1107 aa22.3■■□□□ 1.16
CPSF7-202ENST00000394888 PRG4Q92954 1404 aaPredicted RBP22.29■■□□□ 1.16
CPSF7-202ENST00000394888 ROCK1Q13464 1354 aa22.27■■□□□ 1.16
CPSF7-202ENST00000394888 GPATCH8Q9UKJ3 1502 aaKnown RBP22.25■■□□□ 1.15
CPSF7-202ENST00000394888 CHD1O14646 1710 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms