RNA–Protein interactions for RNA: ENST00000394104.6

GAPVD1-206, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2 BASIC

Gene GAPVD1, Length 6,737 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-206ENST00000394104 DCAF8L2P0C7V8 631 aa9.66□□□□□ -0.86
GAPVD1-206ENST00000394104 PELP1Q8IZL8 1130 aaKnown RBP9.21□□□□□ -0.94
GAPVD1-206ENST00000394104 EHMT2Q96KQ7 1210 aa9.17□□□□□ -0.94
GAPVD1-206ENST00000394104 SUPT5HO00267 1087 aaKnown RBP9.12□□□□□ -0.95
GAPVD1-206ENST00000394104 ERICH6Q7L0X2 663 aa8.98□□□□□ -0.97
GAPVD1-206ENST00000394104 SHROOM4Q9ULL8 1493 aa8.89□□□□□ -0.99
GAPVD1-206ENST00000394104 APLP2Q06481 763 aa8.87□□□□□ -0.99
GAPVD1-206ENST00000394104 TTBK1Q5TCY1 1321 aaPredicted RBP8.87□□□□□ -0.99
GAPVD1-206ENST00000394104 CCER1Q8TC90 406 aaPredicted RBP8.81□□□□□ -1
GAPVD1-206ENST00000394104 PCGF6Q9BYE7 350 aa8.72□□□□□ -1.01
GAPVD1-206ENST00000394104 MYT1Q01538 1121 aa8.71□□□□□ -1.01
GAPVD1-206ENST00000394104 FAM9AQ8IZU1 332 aaPredicted RBP8.71□□□□□ -1.02
GAPVD1-206ENST00000394104 CENPBP07199 599 aaPredicted RBP8.7□□□□□ -1.02
GAPVD1-206ENST00000394104 RANGAP1P46060 587 aaPredicted RBP8.7□□□□□ -1.02
GAPVD1-206ENST00000394104 ATP1B4Q9UN42 357 aaPredicted RBP8.65□□□□□ -1.03
GAPVD1-206ENST00000394104 YTHDC1Q96MU7 727 aaKnown RBP8.63□□□□□ -1.03
GAPVD1-206ENST00000394104 NEFLP07196 543 aa8.61□□□□□ -1.03
GAPVD1-206ENST00000394104 NISCHQ9Y2I1 1504 aa8.57□□□□□ -1.04
GAPVD1-206ENST00000394104 DAXXQ9UER7 740 aaPredicted RBP8.51□□□□□ -1.05
GAPVD1-206ENST00000394104 ZEB1P37275 1124 aaPredicted RBP8.5□□□□□ -1.05
GAPVD1-206ENST00000394104 POLR3GLQ9BT43 218 aa8.42□□□□□ -1.06
GAPVD1-206ENST00000394104 UBTFP17480 764 aaKnown RBP8.4□□□□□ -1.07
GAPVD1-206ENST00000394104 PPARGC1BQ86YN6 1023 aaKnown RBP8.39□□□□□ -1.07
GAPVD1-206ENST00000394104 CNGB1Q14028 1251 aaPredicted RBP8.38□□□□□ -1.07
GAPVD1-206ENST00000394104 TRIM41Q8WV44 630 aa8.37□□□□□ -1.07
GAPVD1-206ENST00000394104 MYT1LQ9UL68 1186 aa8.36□□□□□ -1.07
GAPVD1-206ENST00000394104 CHIC1Q5VXU3 224 aa8.32□□□□□ -1.08
GAPVD1-206ENST00000394104 ZNF316A6NFI3 1004 aaPredicted RBP8.31□□□□□ -1.08
GAPVD1-206ENST00000394104 SLC4A1APQ9BWU0 796 aaKnown RBP8.3□□□□□ -1.08
GAPVD1-206ENST00000394104 ITGAEP38570 1179 aa8.29□□□□□ -1.08
GAPVD1-206ENST00000394104 CLSPNQ9HAW4 1339 aa8.26□□□□□ -1.09
GAPVD1-206ENST00000394104 RTL5Q5HYW3 569 aaPredicted RBP8.25□□□□□ -1.09
GAPVD1-206ENST00000394104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.24□□□□□ -1.09
GAPVD1-206ENST00000394104 HNRNPUL2Q1KMD3 747 aaKnown RBP8.24□□□□□ -1.09
GAPVD1-206ENST00000394104 TRIM26Q12899 539 aaPredicted RBP8.14□□□□□ -1.11
GAPVD1-206ENST00000394104 HRCP23327 699 aa8.14□□□□□ -1.11
GAPVD1-206ENST00000394104 BCL11AQ9H165 835 aa8.12□□□□□ -1.11
GAPVD1-206ENST00000394104 BCANQ96GW7 911 aa8.1□□□□□ -1.11
GAPVD1-206ENST00000394104 SLC24A1O60721 1099 aa8.08□□□□□ -1.12
GAPVD1-206ENST00000394104 ZBTB47Q9UFB7 747 aaPredicted RBP8.06□□□□□ -1.12
GAPVD1-206ENST00000394104 DIEXFQ68CQ4 756 aaKnown RBP8.02□□□□□ -1.13
GAPVD1-206ENST00000394104 CDK11AQ9UQ88 783 aaPredicted RBP8□□□□□ -1.13
GAPVD1-206ENST00000394104 NEUROD1Q13562 356 aa8□□□□□ -1.13
GAPVD1-206ENST00000394104 FAM50AQ14320 339 aaKnown RBP7.99□□□□□ -1.13
GAPVD1-206ENST00000394104 TRIM52Q96A61 297 aa7.99□□□□□ -1.13
GAPVD1-206ENST00000394104 CANXP27824 592 aaKnown RBP7.99□□□□□ -1.13
GAPVD1-206ENST00000394104 LOC105371045A0A1W2PR82 267 aa7.99□□□□□ -1.13
GAPVD1-206ENST00000394104 ZNF326Q5BKZ1 582 aaKnown RBP7.96□□□□□ -1.14
GAPVD1-206ENST00000394104 EIF5BO60841 1220 aaKnown RBP7.94□□□□□ -1.14
GAPVD1-206ENST00000394104 NPM2Q86SE8 214 aaKnown RBP7.94□□□□□ -1.14
GAPVD1-206ENST00000394104 GTF3C3Q9Y5Q9 886 aa7.94□□□□□ -1.14
GAPVD1-206ENST00000394104 ANP32CO43423 234 aa7.92□□□□□ -1.14
GAPVD1-206ENST00000394104 ANP32AP39687 249 aaKnown RBP7.89□□□□□ -1.15
GAPVD1-206ENST00000394104 ANP32BQ92688 251 aaKnown RBP7.87□□□□□ -1.15
GAPVD1-206ENST00000394104 NEFMP07197 916 aa7.87□□□□□ -1.15
GAPVD1-206ENST00000394104 HSP90AA1P07900 732 aaKnown RBP7.84□□□□□ -1.15
GAPVD1-206ENST00000394104 ARXQ96QS3 562 aa7.82□□□□□ -1.16
GAPVD1-206ENST00000394104 GLIPR1L2Q4G1C9 344 aa7.79□□□□□ -1.16
GAPVD1-206ENST00000394104 NBR1Q14596 966 aa7.77□□□□□ -1.17
GAPVD1-206ENST00000394104 PLPPR3Q6T4P5 718 aa7.77□□□□□ -1.17
GAPVD1-206ENST00000394104 FBLN2P98095 1184 aa7.75□□□□□ -1.17
GAPVD1-206ENST00000394104 ARID3CA6NKF2 412 aa7.75□□□□□ -1.17
GAPVD1-206ENST00000394104 UPF2Q9HAU5 1272 aaKnown RBP7.74□□□□□ -1.17
GAPVD1-206ENST00000394104 FKBP8Q14318 412 aa7.74□□□□□ -1.17
GAPVD1-206ENST00000394104 CDK11BP21127 795 aaKnown RBP7.72□□□□□ -1.17
GAPVD1-206ENST00000394104 SALL2Q9Y467 1007 aaPredicted RBP7.72□□□□□ -1.17
GAPVD1-206ENST00000394104 ACIN1Q9UKV3 1341 aaKnown RBP7.7□□□□□ -1.18
GAPVD1-206ENST00000394104 ZNF777Q9ULD5 760 aaPredicted RBP7.69□□□□□ -1.18
GAPVD1-206ENST00000394104 CHGAP10645 457 aaKnown RBP7.69□□□□□ -1.18
GAPVD1-206ENST00000394104 P3H3Q8IVL6 736 aa7.68□□□□□ -1.18
GAPVD1-206ENST00000394104 FAM9BQ8IZU0 186 aa7.67□□□□□ -1.18
GAPVD1-206ENST00000394104 STAG3Q9UJ98 1225 aa7.67□□□□□ -1.18
GAPVD1-206ENST00000394104 A0A0G2JS52 829 aa7.67□□□□□ -1.18
GAPVD1-206ENST00000394104 SCAF1Q9H7N4 1312 aaKnown RBP7.66□□□□□ -1.18
GAPVD1-206ENST00000394104 TULP1O00294 542 aaPredicted RBP7.66□□□□□ -1.18
GAPVD1-206ENST00000394104 ABCC9O60706 1549 aa7.66□□□□□ -1.18
GAPVD1-206ENST00000394104 ESF1Q9H501 851 aaKnown RBP7.65□□□□□ -1.18
GAPVD1-206ENST00000394104 HNRNPUQ00839 825 aaKnown RBP eCLIP7.65□□□□□ -1.19
GAPVD1-206ENST00000394104 TPRNQ4KMQ1 711 aa7.63□□□□□ -1.19
GAPVD1-206ENST00000394104 PLEKHG5O94827 1062 aa7.62□□□□□ -1.19
GAPVD1-206ENST00000394104 CCDC136Q96JN2 1154 aa7.62□□□□□ -1.19
GAPVD1-206ENST00000394104 ZBTB7CA1YPR0 619 aa7.62□□□□□ -1.19
GAPVD1-206ENST00000394104 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.61□□□□□ -1.19
GAPVD1-206ENST00000394104 IRX6P78412 446 aaPredicted RBP7.6□□□□□ -1.19
GAPVD1-206ENST00000394104 PABPN1Q86U42 306 aaKnown RBP eCLIP7.59□□□□□ -1.19
GAPVD1-206ENST00000394104 TRIM44Q96DX7 344 aaPredicted RBP7.59□□□□□ -1.19
GAPVD1-206ENST00000394104 NCLP19338 710 aaKnown RBP7.59□□□□□ -1.2
GAPVD1-206ENST00000394104 WDR43Q15061 677 aaKnown RBP eCLIP7.59□□□□□ -1.2
GAPVD1-206ENST00000394104 SENP3Q9H4L4 574 aaPredicted RBP7.59□□□□□ -1.2
GAPVD1-206ENST00000394104 MYH16Q9H6N6 1097 aa7.58□□□□□ -1.2
GAPVD1-206ENST00000394104 DDX10Q13206 875 aaKnown RBP7.58□□□□□ -1.2
GAPVD1-206ENST00000394104 TMC1Q8TDI8 760 aa7.57□□□□□ -1.2
GAPVD1-206ENST00000394104 TONSLQ96HA7 1378 aa7.57□□□□□ -1.2
GAPVD1-206ENST00000394104 TNNT2P45379 298 aaPredicted RBP7.56□□□□□ -1.2
GAPVD1-206ENST00000394104 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.56□□□□□ -1.24e-9■□□□□ 10.4
GAPVD1-206ENST00000394104 PTMAP06454 111 aaKnown RBP7.56□□□□□ -1.2
GAPVD1-206ENST00000394104 DNTTIP2Q5QJE6 756 aaKnown RBP7.56□□□□□ -1.2
GAPVD1-206ENST00000394104 TAOK2Q9UL54 1235 aa7.56□□□□□ -1.2
GAPVD1-206ENST00000394104 C14orf37Q86TY3 774 aa7.53□□□□□ -1.2
GAPVD1-206ENST00000394104 ZRSR1Q15695 479 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms