RNA–Protein interactions for RNA: ENST00000394092.6

SMAD1-202, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,658 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-202ENST00000394092 AEBP2Q6ZN18 517 aaPredicted RBP17.13■□□□□ 0.33
SMAD1-202ENST00000394092 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
SMAD1-202ENST00000394092 NISCHQ9Y2I1 1504 aa15.46■□□□□ 0.07
SMAD1-202ENST00000394092 SENP3Q9H4L4 574 aaPredicted RBP14.75□□□□□ -0.05
SMAD1-202ENST00000394092 PHF23Q9BUL5 403 aaPredicted RBP14.46□□□□□ -0.09
SMAD1-202ENST00000394092 FOXD1Q16676 465 aa13.79□□□□□ -0.2
SMAD1-202ENST00000394092 POTEDQ86YR6 584 aa13.76□□□□□ -0.21
SMAD1-202ENST00000394092 CCDC180Q9P1Z9 1646 aa13.41□□□□□ -0.26
SMAD1-202ENST00000394092 MSH5O43196 834 aa13.15□□□□□ -0.3
SMAD1-202ENST00000394092 ZCCHC6Q5VYS8 1495 aaKnown RBP13.07□□□□□ -0.32
SMAD1-202ENST00000394092 DCAF1Q9Y4B6 1507 aa12.82□□□□□ -0.36
SMAD1-202ENST00000394092 SHROOM4Q9ULL8 1493 aa12.79□□□□□ -0.36
SMAD1-202ENST00000394092 PIAS4Q8N2W9 510 aaPredicted RBP12.78□□□□□ -0.36
SMAD1-202ENST00000394092 DCAF8L2P0C7V8 631 aa12.58□□□□□ -0.4
SMAD1-202ENST00000394092 MYO15BQ96JP2 1530 aa12.54□□□□□ -0.4
SMAD1-202ENST00000394092 SUPT5HO00267 1087 aaKnown RBP12.47□□□□□ -0.41
SMAD1-202ENST00000394092 PPP6R1Q9UPN7 881 aa12.45□□□□□ -0.42
SMAD1-202ENST00000394092 ADRA2BP18089 450 aa12.4□□□□□ -0.42
SMAD1-202ENST00000394092 NACADO15069 1562 aa12.37□□□□□ -0.43
SMAD1-202ENST00000394092 PLPPR3Q6T4P5 718 aa12.36□□□□□ -0.43
SMAD1-202ENST00000394092 ABCC9O60706 1549 aa12.34□□□□□ -0.43
SMAD1-202ENST00000394092 SCRIBQ14160 1630 aa12.32□□□□□ -0.44
SMAD1-202ENST00000394092 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
SMAD1-202ENST00000394092 RSF1Q96T23 1441 aaPredicted RBP12.09□□□□□ -0.47
SMAD1-202ENST00000394092 UNC13AQ9UPW8 1703 aa11.98□□□□□ -0.49
SMAD1-202ENST00000394092 BAZ1AQ9NRL2 1556 aaPredicted RBP11.95□□□□□ -0.5
SMAD1-202ENST00000394092 MROH2BQ7Z745 1585 aa11.93□□□□□ -0.5
SMAD1-202ENST00000394092 CECR2Q9BXF3 1484 aa11.93□□□□□ -0.5
SMAD1-202ENST00000394092 WIZO95785 1651 aa11.89□□□□□ -0.51
SMAD1-202ENST00000394092 SMARCA4P51532 1647 aa11.84□□□□□ -0.51
SMAD1-202ENST00000394092 TOP2AP11388 1531 aaKnown RBP11.8□□□□□ -0.52
SMAD1-202ENST00000394092 BICRAQ9NZM4 1560 aa11.76□□□□□ -0.53
SMAD1-202ENST00000394092 EIF4G1Q04637 1599 aaKnown RBP11.73□□□□□ -0.53
SMAD1-202ENST00000394092 TRIM41Q8WV44 630 aa11.72□□□□□ -0.53
SMAD1-202ENST00000394092 PEG3Q9GZU2 1588 aa11.69□□□□□ -0.54
SMAD1-202ENST00000394092 SMARCA2P51531 1590 aa11.68□□□□□ -0.54
SMAD1-202ENST00000394092 CACNB1Q02641 598 aaPredicted RBP11.64□□□□□ -0.55
SMAD1-202ENST00000394092 CCDC88BA6NC98 1476 aa11.62□□□□□ -0.55
SMAD1-202ENST00000394092 LOC105371045A0A1W2PR82 267 aa11.62□□□□□ -0.55
SMAD1-202ENST00000394092 DMRT2Q9Y5R5 561 aa11.59□□□□□ -0.55
SMAD1-202ENST00000394092 PABPN1Q86U42 306 aaKnown RBP eCLIP11.58□□□□□ -0.56
SMAD1-202ENST00000394092 MAPK8IP2Q13387 824 aaPredicted RBP11.55□□□□□ -0.56
SMAD1-202ENST00000394092 ATAD2BQ9ULI0 1458 aa11.52□□□□□ -0.57
SMAD1-202ENST00000394092 BAZ1BQ9UIG0 1483 aaKnown RBP11.51□□□□□ -0.57
SMAD1-202ENST00000394092 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
SMAD1-202ENST00000394092 PCGF6Q9BYE7 350 aa11.49□□□□□ -0.57
SMAD1-202ENST00000394092 FAM9AQ8IZU1 332 aaPredicted RBP11.48□□□□□ -0.57
SMAD1-202ENST00000394092 EEA1Q15075 1411 aa11.47□□□□□ -0.57
SMAD1-202ENST00000394092 HRCP23327 699 aa11.46□□□□□ -0.57
SMAD1-202ENST00000394092 TRIM26Q12899 539 aaPredicted RBP11.45□□□□□ -0.58
SMAD1-202ENST00000394092 HMGXB3Q12766 1538 aa11.44□□□□□ -0.58
SMAD1-202ENST00000394092 WRNQ14191 1432 aaPredicted RBP eCLIP11.41□□□□□ -0.58
SMAD1-202ENST00000394092 SCAF1Q9H7N4 1312 aaKnown RBP11.4□□□□□ -0.58
SMAD1-202ENST00000394092 NCAPD3P42695 1498 aa11.36□□□□□ -0.59
SMAD1-202ENST00000394092 SYNJ1O43426 1573 aa11.34□□□□□ -0.59
SMAD1-202ENST00000394092 SOGA1O94964 1423 aa11.32□□□□□ -0.6
SMAD1-202ENST00000394092 PRDM2Q13029 1718 aa11.31□□□□□ -0.6
SMAD1-202ENST00000394092 KIF21BO75037 1637 aa11.31□□□□□ -0.6
SMAD1-202ENST00000394092 GOLGA3Q08378 1498 aa11.31□□□□□ -0.6
SMAD1-202ENST00000394092 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
SMAD1-202ENST00000394092 BIVM-ERCC5R4GMW8 1640 aa11.31□□□□□ -0.6
SMAD1-202ENST00000394092 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
SMAD1-202ENST00000394092 EHMT2Q96KQ7 1210 aa11.29□□□□□ -0.6
SMAD1-202ENST00000394092 CSRNP3Q8WYN3 585 aa11.28□□□□□ -0.6
SMAD1-202ENST00000394092 CEP162Q5TB80 1403 aa11.27□□□□□ -0.61
SMAD1-202ENST00000394092 CEP164Q9UPV0 1460 aa11.27□□□□□ -0.61
SMAD1-202ENST00000394092 RUSC2Q8N2Y8 1516 aa11.25□□□□□ -0.61
SMAD1-202ENST00000394092 ZEB1P37275 1124 aaPredicted RBP11.22□□□□□ -0.61
SMAD1-202ENST00000394092 CFTRP13569 1480 aa11.21□□□□□ -0.61
SMAD1-202ENST00000394092 DCAF8L1A6NGE4 600 aa11.2□□□□□ -0.62
SMAD1-202ENST00000394092 UBTFP17480 764 aaKnown RBP11.18□□□□□ -0.62
SMAD1-202ENST00000394092 ERICH3Q5RHP9 1530 aa11.17□□□□□ -0.62
SMAD1-202ENST00000394092 CC2D2AQ9P2K1 1620 aa11.16□□□□□ -0.62
SMAD1-202ENST00000394092 RNF39Q9H2S5 420 aa11.15□□□□□ -0.62
SMAD1-202ENST00000394092 CUX1P39880 1505 aa11.15□□□□□ -0.62
SMAD1-202ENST00000394092 CLIP1P30622 1438 aa11.11□□□□□ -0.63
SMAD1-202ENST00000394092 RAPGEF2Q9Y4G8 1499 aa11.1□□□□□ -0.63
SMAD1-202ENST00000394092 KIF27Q86VH2 1401 aa11.09□□□□□ -0.63
SMAD1-202ENST00000394092 CADPSQ9ULU8 1353 aa11.09□□□□□ -0.63
SMAD1-202ENST00000394092 PRXQ9BXM0 1461 aa11.08□□□□□ -0.64
SMAD1-202ENST00000394092 VPS8Q8N3P4 1428 aa11.07□□□□□ -0.64
SMAD1-202ENST00000394092 PPARGC1BQ86YN6 1023 aaKnown RBP11.07□□□□□ -0.64
SMAD1-202ENST00000394092 FANCD2Q9BXW9 1451 aa10.99□□□□□ -0.65
SMAD1-202ENST00000394092 DNMBPQ6XZF7 1577 aa10.99□□□□□ -0.65
SMAD1-202ENST00000394092 FGD5Q6ZNL6 1462 aa10.99□□□□□ -0.65
SMAD1-202ENST00000394092 LAMC3Q9Y6N6 1575 aa10.99□□□□□ -0.65
SMAD1-202ENST00000394092 APLP2Q06481 763 aa10.98□□□□□ -0.65
SMAD1-202ENST00000394092 C1QBPQ07021 282 aaKnown RBP10.98□□□□□ -0.65
SMAD1-202ENST00000394092 CUX2O14529 1486 aa10.98□□□□□ -0.65
SMAD1-202ENST00000394092 ARAP1Q96P48 1450 aa10.95□□□□□ -0.66
SMAD1-202ENST00000394092 HOXD11P31277 338 aaPredicted RBP10.95□□□□□ -0.66
SMAD1-202ENST00000394092 CCER1Q8TC90 406 aaPredicted RBP10.94□□□□□ -0.66
SMAD1-202ENST00000394092 TTBK1Q5TCY1 1321 aaPredicted RBP10.92□□□□□ -0.66
SMAD1-202ENST00000394092 CUL7Q14999 1698 aa10.92□□□□□ -0.66
SMAD1-202ENST00000394092 TOPBP1Q92547 1522 aa10.91□□□□□ -0.66
SMAD1-202ENST00000394092 ABCA10Q8WWZ4 1543 aa10.91□□□□□ -0.66
SMAD1-202ENST00000394092 IGF1RP08069 1367 aa10.9□□□□□ -0.66
SMAD1-202ENST00000394092 WDR97A6NE52 1622 aa10.89□□□□□ -0.67
SMAD1-202ENST00000394092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.89□□□□□ -0.67
SMAD1-202ENST00000394092 POLA1P09884 1462 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms