RNA–Protein interactions for RNA: ENST00000391057.1

RNU6-550P-201, Transcript of RNA, U6 small nuclear 550, pseudogene, humanhuman

BASIC

Gene RNU6-550P, Length 101 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-550P-201ENST00000391057 AEBP2Q6ZN18 517 aaPredicted RBP16.32■□□□□ 0.2
RNU6-550P-201ENST00000391057 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
RNU6-550P-201ENST00000391057 PHF23Q9BUL5 403 aaPredicted RBP14.07□□□□□ -0.16
RNU6-550P-201ENST00000391057 SENP3Q9H4L4 574 aaPredicted RBP13.89□□□□□ -0.19
RNU6-550P-201ENST00000391057 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
RNU6-550P-201ENST00000391057 FOXD1Q16676 465 aa12.85□□□□□ -0.35
RNU6-550P-201ENST00000391057 ADRA2BP18089 450 aa12.4□□□□□ -0.42
RNU6-550P-201ENST00000391057 PPP6R1Q9UPN7 881 aa12.38□□□□□ -0.43
RNU6-550P-201ENST00000391057 PIAS4Q8N2W9 510 aaPredicted RBP12.17□□□□□ -0.46
RNU6-550P-201ENST00000391057 MSH5O43196 834 aa11.87□□□□□ -0.51
RNU6-550P-201ENST00000391057 PPP4R3CPQ6ZMV5 832 aa11.5□□□□□ -0.57
RNU6-550P-201ENST00000391057 SCAF1Q9H7N4 1312 aaKnown RBP11.38□□□□□ -0.59
RNU6-550P-201ENST00000391057 KCNA4P22459 653 aa11.27□□□□□ -0.61
RNU6-550P-201ENST00000391057 NCBP3Q53F19 620 aaKnown RBP11.24□□□□□ -0.61
RNU6-550P-201ENST00000391057 MAPK8IP2Q13387 824 aaPredicted RBP11.22□□□□□ -0.61
RNU6-550P-201ENST00000391057 CNKSR2Q8WXI2 1034 aa11.17□□□□□ -0.62
RNU6-550P-201ENST00000391057 DMRT2Q9Y5R5 561 aa11.08□□□□□ -0.64
RNU6-550P-201ENST00000391057 NPM3O75607 178 aaKnown RBP11.04□□□□□ -0.64
RNU6-550P-201ENST00000391057 RNF216Q9NWF9 866 aaPredicted RBP10.93□□□□□ -0.66
RNU6-550P-201ENST00000391057 HOXD11P31277 338 aaPredicted RBP10.86□□□□□ -0.67
RNU6-550P-201ENST00000391057 SLC4A1APQ9BWU0 796 aaKnown RBP10.78□□□□□ -0.68
RNU6-550P-201ENST00000391057 POTEDQ86YR6 584 aa10.69□□□□□ -0.7
RNU6-550P-201ENST00000391057 DNAJC5BQ9UF47 199 aa10.69□□□□□ -0.7
RNU6-550P-201ENST00000391057 DCAF8L1A6NGE4 600 aa10.63□□□□□ -0.71
RNU6-550P-201ENST00000391057 EHMT2Q96KQ7 1210 aa10.53□□□□□ -0.72
RNU6-550P-201ENST00000391057 SLC4A2P04920 1241 aa10.39□□□□□ -0.75
RNU6-550P-201ENST00000391057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.39□□□□□ -0.75
RNU6-550P-201ENST00000391057 FOXD4L1Q9NU39 408 aa10.39□□□□□ -0.75
RNU6-550P-201ENST00000391057 ZBTB22O15209 634 aa10.36□□□□□ -0.75
RNU6-550P-201ENST00000391057 CSRNP3Q8WYN3 585 aa10.34□□□□□ -0.75
RNU6-550P-201ENST00000391057 MYCNP04198 464 aaPredicted RBP10.22□□□□□ -0.77
RNU6-550P-201ENST00000391057 U3KPZ7 1027 aaPredicted RBP10.2□□□□□ -0.78
RNU6-550P-201ENST00000391057 RNF39Q9H2S5 420 aa10.15□□□□□ -0.78
RNU6-550P-201ENST00000391057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.12□□□□□ -0.79
RNU6-550P-201ENST00000391057 HNRNPUL2Q1KMD3 747 aaKnown RBP10.12□□□□□ -0.79
RNU6-550P-201ENST00000391057 SAMD1Q6SPF0 538 aaPredicted RBP10.08□□□□□ -0.8
RNU6-550P-201ENST00000391057 C1QBPQ07021 282 aaKnown RBP10.04□□□□□ -0.8
RNU6-550P-201ENST00000391057 APLP2Q06481 763 aa10.03□□□□□ -0.8
RNU6-550P-201ENST00000391057 ATXN8OSP0DMR3 200 aa10.02□□□□□ -0.81
RNU6-550P-201ENST00000391057 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
RNU6-550P-201ENST00000391057 CAPN15O75808 1086 aa9.89□□□□□ -0.83
RNU6-550P-201ENST00000391057 SPINK5Q9NQ38 1064 aaPredicted RBP9.89□□□□□ -0.83
RNU6-550P-201ENST00000391057 CACNB1Q02641 598 aaPredicted RBP9.87□□□□□ -0.83
RNU6-550P-201ENST00000391057 ZNF219Q9P2Y4 722 aaPredicted RBP9.85□□□□□ -0.83
RNU6-550P-201ENST00000391057 TRHP20396 242 aaPredicted RBP9.84□□□□□ -0.83
RNU6-550P-201ENST00000391057 ABCB7O75027 752 aa9.69□□□□□ -0.86
RNU6-550P-201ENST00000391057 DSG3P32926 999 aa9.68□□□□□ -0.86
RNU6-550P-201ENST00000391057 POLA2Q14181 598 aa9.68□□□□□ -0.86
RNU6-550P-201ENST00000391057 ZBTB12Q9Y330 459 aaPredicted RBP9.56□□□□□ -0.88
RNU6-550P-201ENST00000391057 FBLN2P98095 1184 aa9.55□□□□□ -0.88
RNU6-550P-201ENST00000391057 MKRN4PQ13434 485 aaPredicted RBP9.48□□□□□ -0.89
RNU6-550P-201ENST00000391057 FKBP8Q14318 412 aa9.39□□□□□ -0.91
RNU6-550P-201ENST00000391057 OSCARQ8IYS5 282 aa9.36□□□□□ -0.91
RNU6-550P-201ENST00000391057 SPDYE4A6NLX3 237 aa9.33□□□□□ -0.92
RNU6-550P-201ENST00000391057 SPDYE2BA6NHP3 402 aa9.29□□□□□ -0.92
RNU6-550P-201ENST00000391057 SPDYE6P0CI01 402 aa9.29□□□□□ -0.92
RNU6-550P-201ENST00000391057 SPDYE2Q495Y8 402 aa9.29□□□□□ -0.92
RNU6-550P-201ENST00000391057 RBM42Q9BTD8 480 aaKnown RBP9.26□□□□□ -0.93
RNU6-550P-201ENST00000391057 ZNF692Q9BU19 519 aaPredicted RBP9.25□□□□□ -0.93
RNU6-550P-201ENST00000391057 SSUH2Q9Y2M2 353 aa9.2□□□□□ -0.94
RNU6-550P-201ENST00000391057 PROM2Q8N271 834 aa9.15□□□□□ -0.94
RNU6-550P-201ENST00000391057 AKT1S1Q96B36 256 aa9.14□□□□□ -0.95
RNU6-550P-201ENST00000391057 PABPN1Q86U42 306 aaKnown RBP eCLIP9.13□□□□□ -0.95
RNU6-550P-201ENST00000391057 FBXO3Q9UK99 471 aa9.05□□□□□ -0.96
RNU6-550P-201ENST00000391057 REM2Q8IYK8 340 aaPredicted RBP9.04□□□□□ -0.96
RNU6-550P-201ENST00000391057 SPDYE1Q8NFV5 336 aaPredicted RBP9.01□□□□□ -0.97
RNU6-550P-201ENST00000391057 STAG3Q9UJ98 1225 aa9.01□□□□□ -0.97
RNU6-550P-201ENST00000391057 CLEC11AQ9Y240 323 aa8.96□□□□□ -0.98
RNU6-550P-201ENST00000391057 PITPNM1O00562 1244 aa8.94□□□□□ -0.98
RNU6-550P-201ENST00000391057 VASPP50552 380 aaPredicted RBP8.91□□□□□ -0.98
RNU6-550P-201ENST00000391057 PRR29P0C7W0 189 aa8.89□□□□□ -0.99
RNU6-550P-201ENST00000391057 PLCD3Q8N3E9 789 aa8.85□□□□□ -0.99
RNU6-550P-201ENST00000391057 MIER1Q8N108 512 aa8.84□□□□□ -0.99
RNU6-550P-201ENST00000391057 PLEKHG5O94827 1062 aa8.83□□□□□ -1
RNU6-550P-201ENST00000391057 CHRDL2Q6WN34 429 aa8.83□□□□□ -1
RNU6-550P-201ENST00000391057 IFNLR1Q8IU57 520 aaPredicted RBP8.77□□□□□ -1.01
RNU6-550P-201ENST00000391057 KLHL34Q8N239 644 aa8.77□□□□□ -1.01
RNU6-550P-201ENST00000391057 CREBZFQ9NS37 354 aa8.77□□□□□ -1.01
RNU6-550P-201ENST00000391057 ZBTB47Q9UFB7 747 aaPredicted RBP8.76□□□□□ -1.01
RNU6-550P-201ENST00000391057 FXR2P51116 673 aaKnown RBP eCLIP8.75□□□□□ -1.01
RNU6-550P-201ENST00000391057 PIP4P2Q8N4L2 257 aa8.73□□□□□ -1.01
RNU6-550P-201ENST00000391057 PRKAR2AP13861 404 aaKnown RBP8.72□□□□□ -1.01
RNU6-550P-201ENST00000391057 CHADLQ6NUI6 762 aa8.72□□□□□ -1.01
RNU6-550P-201ENST00000391057 SPOCK2Q92563 424 aa8.69□□□□□ -1.02
RNU6-550P-201ENST00000391057 NPM1P06748 294 aaKnown RBP eCLIP8.66□□□□□ -1.02
RNU6-550P-201ENST00000391057 MNX1P50219 401 aaPredicted RBP8.66□□□□□ -1.02
RNU6-550P-201ENST00000391057 AMER1Q5JTC6 1135 aaPredicted RBP8.66□□□□□ -1.02
RNU6-550P-201ENST00000391057 FARP1Q9Y4F1 1045 aaPredicted RBP8.65□□□□□ -1.02
RNU6-550P-201ENST00000391057 RTN4Q9NQC3 1192 aaKnown RBP8.6□□□□□ -1.03
RNU6-550P-201ENST00000391057 NUBP1P53384 320 aa8.59□□□□□ -1.03
RNU6-550P-201ENST00000391057 FAM212AQ96EL1 285 aa8.56□□□□□ -1.04
RNU6-550P-201ENST00000391057 CIZ1Q9ULV3 898 aaPredicted RBP8.56□□□□□ -1.04
RNU6-550P-201ENST00000391057 GSE1Q14687 1217 aa8.54□□□□□ -1.04
RNU6-550P-201ENST00000391057 DCAF8Q5TAQ9 597 aa8.54□□□□□ -1.04
RNU6-550P-201ENST00000391057 RASEFQ8IZ41 740 aa8.54□□□□□ -1.04
RNU6-550P-201ENST00000391057 PAK3O75914 559 aaPredicted RBP8.51□□□□□ -1.05
RNU6-550P-201ENST00000391057 TSPYL2Q9H2G4 693 aaPredicted RBP8.5□□□□□ -1.05
RNU6-550P-201ENST00000391057 PKD2Q13563 968 aa8.49□□□□□ -1.05
RNU6-550P-201ENST00000391057 POTEHQ6S545 545 aa8.49□□□□□ -1.05
RNU6-550P-201ENST00000391057 CD44P16070 742 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms