RNA–Protein interactions for RNA: ENST00000390990.1

RNU6-239P-201, Transcript of RNA, U6 small nuclear 239, pseudogene, humanhuman

BASIC

Gene RNU6-239P, Length 99 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-239P-201ENST00000390990 AEBP2Q6ZN18 517 aaPredicted RBP15.69■□□□□ 0.1
RNU6-239P-201ENST00000390990 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
RNU6-239P-201ENST00000390990 SENP3Q9H4L4 574 aaPredicted RBP13.34□□□□□ -0.27
RNU6-239P-201ENST00000390990 PHF23Q9BUL5 403 aaPredicted RBP13.18□□□□□ -0.3
RNU6-239P-201ENST00000390990 FOXD1Q16676 465 aa12.51□□□□□ -0.41
RNU6-239P-201ENST00000390990 POTEDQ86YR6 584 aa11.93□□□□□ -0.5
RNU6-239P-201ENST00000390990 MSH5O43196 834 aa11.74□□□□□ -0.53
RNU6-239P-201ENST00000390990 PIAS4Q8N2W9 510 aaPredicted RBP11.61□□□□□ -0.55
RNU6-239P-201ENST00000390990 PPP6R1Q9UPN7 881 aa11.55□□□□□ -0.56
RNU6-239P-201ENST00000390990 PLPPR3Q6T4P5 718 aa11.53□□□□□ -0.56
RNU6-239P-201ENST00000390990 ADRA2BP18089 450 aa11.48□□□□□ -0.57
RNU6-239P-201ENST00000390990 MAPK8IP2Q13387 824 aaPredicted RBP10.65□□□□□ -0.7
RNU6-239P-201ENST00000390990 DMRT2Q9Y5R5 561 aa10.56□□□□□ -0.72
RNU6-239P-201ENST00000390990 SCAF1Q9H7N4 1312 aaKnown RBP10.42□□□□□ -0.74
RNU6-239P-201ENST00000390990 CACNB1Q02641 598 aaPredicted RBP10.25□□□□□ -0.77
RNU6-239P-201ENST00000390990 DCAF8L1A6NGE4 600 aa10.14□□□□□ -0.79
RNU6-239P-201ENST00000390990 PPP4R3CPQ6ZMV5 832 aa10.11□□□□□ -0.79
RNU6-239P-201ENST00000390990 HOXD11P31277 338 aaPredicted RBP10.08□□□□□ -0.8
RNU6-239P-201ENST00000390990 RNF39Q9H2S5 420 aa10.04□□□□□ -0.8
RNU6-239P-201ENST00000390990 CNKSR2Q8WXI2 1034 aa9.95□□□□□ -0.82
RNU6-239P-201ENST00000390990 RNF216Q9NWF9 866 aaPredicted RBP9.93□□□□□ -0.82
RNU6-239P-201ENST00000390990 C1QBPQ07021 282 aaKnown RBP9.85□□□□□ -0.83
RNU6-239P-201ENST00000390990 DNAJC5BQ9UF47 199 aa9.74□□□□□ -0.85
RNU6-239P-201ENST00000390990 NCBP3Q53F19 620 aaKnown RBP9.6□□□□□ -0.87
RNU6-239P-201ENST00000390990 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.59□□□□□ -0.87
RNU6-239P-201ENST00000390990 NPM3O75607 178 aaKnown RBP9.52□□□□□ -0.89
RNU6-239P-201ENST00000390990 U3KPZ7 1027 aaPredicted RBP9.4□□□□□ -0.9
RNU6-239P-201ENST00000390990 SPINK5Q9NQ38 1064 aaPredicted RBP9.35□□□□□ -0.91
RNU6-239P-201ENST00000390990 DSG3P32926 999 aa9.32□□□□□ -0.92
RNU6-239P-201ENST00000390990 CAPN15O75808 1086 aa9.3□□□□□ -0.92
RNU6-239P-201ENST00000390990 POTEHQ6S545 545 aa9.28□□□□□ -0.92
RNU6-239P-201ENST00000390990 SLC4A2P04920 1241 aa9.18□□□□□ -0.94
RNU6-239P-201ENST00000390990 KCNA4P22459 653 aa9.14□□□□□ -0.95
RNU6-239P-201ENST00000390990 TRHP20396 242 aaPredicted RBP9.11□□□□□ -0.95
RNU6-239P-201ENST00000390990 ABCB7O75027 752 aa9.09□□□□□ -0.95
RNU6-239P-201ENST00000390990 ZNF219Q9P2Y4 722 aaPredicted RBP9.04□□□□□ -0.96
RNU6-239P-201ENST00000390990 APLP2Q06481 763 aa9□□□□□ -0.97
RNU6-239P-201ENST00000390990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.97□□□□□ -0.97
RNU6-239P-201ENST00000390990 HNRNPUL2Q1KMD3 747 aaKnown RBP8.97□□□□□ -0.97
RNU6-239P-201ENST00000390990 SAMD1Q6SPF0 538 aaPredicted RBP8.92□□□□□ -0.98
RNU6-239P-201ENST00000390990 RBM42Q9BTD8 480 aaKnown RBP8.84□□□□□ -0.99
RNU6-239P-201ENST00000390990 POLA2Q14181 598 aa8.81□□□□□ -1
RNU6-239P-201ENST00000390990 CHRDL2Q6WN34 429 aa8.79□□□□□ -1
RNU6-239P-201ENST00000390990 MYCNP04198 464 aaPredicted RBP8.77□□□□□ -1.01
RNU6-239P-201ENST00000390990 ATF5Q9Y2D1 282 aaPredicted RBP8.66□□□□□ -1.02
RNU6-239P-201ENST00000390990 AKT1S1Q96B36 256 aa8.61□□□□□ -1.03
RNU6-239P-201ENST00000390990 SP7Q8TDD2 431 aaPredicted RBP8.58□□□□□ -1.04
RNU6-239P-201ENST00000390990 REM2Q8IYK8 340 aaPredicted RBP8.56□□□□□ -1.04
RNU6-239P-201ENST00000390990 FOXD4L1Q9NU39 408 aa8.56□□□□□ -1.04
RNU6-239P-201ENST00000390990 OSCARQ8IYS5 282 aa8.54□□□□□ -1.04
RNU6-239P-201ENST00000390990 PIP4P2Q8N4L2 257 aa8.54□□□□□ -1.04
RNU6-239P-201ENST00000390990 SLC4A1APQ9BWU0 796 aaKnown RBP8.54□□□□□ -1.04
RNU6-239P-201ENST00000390990 ZBTB12Q9Y330 459 aaPredicted RBP8.54□□□□□ -1.04
RNU6-239P-201ENST00000390990 PITPNM1O00562 1244 aa8.47□□□□□ -1.05
RNU6-239P-201ENST00000390990 HAX1O00165 279 aa8.44□□□□□ -1.06
RNU6-239P-201ENST00000390990 FXR2P51116 673 aaKnown RBP eCLIP8.44□□□□□ -1.06
RNU6-239P-201ENST00000390990 ZBTB22O15209 634 aa8.42□□□□□ -1.06
RNU6-239P-201ENST00000390990 EVX2Q03828 476 aa8.38□□□□□ -1.07
RNU6-239P-201ENST00000390990 ATXN8OSP0DMR3 200 aa8.3□□□□□ -1.08
RNU6-239P-201ENST00000390990 SPDYE2BA6NHP3 402 aa8.29□□□□□ -1.08
RNU6-239P-201ENST00000390990 SPDYE6P0CI01 402 aa8.29□□□□□ -1.08
RNU6-239P-201ENST00000390990 SPDYE2Q495Y8 402 aa8.29□□□□□ -1.08
RNU6-239P-201ENST00000390990 FBLN2P98095 1184 aa8.25□□□□□ -1.09
RNU6-239P-201ENST00000390990 PRKAR2AP13861 404 aaKnown RBP8.24□□□□□ -1.09
RNU6-239P-201ENST00000390990 MKRN4PQ13434 485 aaPredicted RBP8.24□□□□□ -1.09
RNU6-239P-201ENST00000390990 CLEC11AQ9Y240 323 aa8.23□□□□□ -1.09
RNU6-239P-201ENST00000390990 SPDYE1Q8NFV5 336 aaPredicted RBP8.21□□□□□ -1.1
RNU6-239P-201ENST00000390990 C19orf67A6NJJ6 358 aa8.19□□□□□ -1.1
RNU6-239P-201ENST00000390990 SSUH2Q9Y2M2 353 aa8.18□□□□□ -1.1
RNU6-239P-201ENST00000390990 ZNF692Q9BU19 519 aaPredicted RBP8.17□□□□□ -1.1
RNU6-239P-201ENST00000390990 GABBR2O75899 941 aa8.14□□□□□ -1.11
RNU6-239P-201ENST00000390990 CHADLQ6NUI6 762 aa8.13□□□□□ -1.11
RNU6-239P-201ENST00000390990 PRR29P0C7W0 189 aa8.05□□□□□ -1.12
RNU6-239P-201ENST00000390990 LHX8Q68G74 356 aa8.05□□□□□ -1.12
RNU6-239P-201ENST00000390990 PABPN1Q86U42 306 aaKnown RBP eCLIP8.05□□□□□ -1.12
RNU6-239P-201ENST00000390990 POTEIP0CG38 1075 aa7.99□□□□□ -1.13
RNU6-239P-201ENST00000390990 CD44P16070 742 aaKnown RBP7.96□□□□□ -1.14
RNU6-239P-201ENST00000390990 FARP1Q9Y4F1 1045 aaPredicted RBP7.96□□□□□ -1.14
RNU6-239P-201ENST00000390990 CLCN6P51797 869 aa7.84□□□□□ -1.15
RNU6-239P-201ENST00000390990 DCBLD2Q96PD2 775 aa7.83□□□□□ -1.16
RNU6-239P-201ENST00000390990 ZNF579Q8NAF0 562 aaKnown RBP7.82□□□□□ -1.16
RNU6-239P-201ENST00000390990 CREBZFQ9NS37 354 aa7.82□□□□□ -1.16
RNU6-239P-201ENST00000390990 ZRANB1Q9UGI0 708 aa7.81□□□□□ -1.16
RNU6-239P-201ENST00000390990 CSRNP3Q8WYN3 585 aa7.8□□□□□ -1.16
RNU6-239P-201ENST00000390990 GALR2O43603 387 aaPredicted RBP7.78□□□□□ -1.16
RNU6-239P-201ENST00000390990 OTUD5Q96G74 571 aa7.73□□□□□ -1.17
RNU6-239P-201ENST00000390990 PLSCR2Q9NRY7 297 aa7.73□□□□□ -1.17
RNU6-239P-201ENST00000390990 STAG3Q9UJ98 1225 aa7.73□□□□□ -1.17
RNU6-239P-201ENST00000390990 POTEB2H3BUK9 544 aa7.72□□□□□ -1.17
RNU6-239P-201ENST00000390990 PHF12Q96QT6 1004 aa7.71□□□□□ -1.18
RNU6-239P-201ENST00000390990 SPDYE4A6NLX3 237 aa7.69□□□□□ -1.18
RNU6-239P-201ENST00000390990 MNX1P50219 401 aaPredicted RBP7.67□□□□□ -1.18
RNU6-239P-201ENST00000390990 PELP1Q8IZL8 1130 aaKnown RBP7.67□□□□□ -1.18
RNU6-239P-201ENST00000390990 PAK3O75914 559 aaPredicted RBP7.65□□□□□ -1.18
RNU6-239P-201ENST00000390990 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
RNU6-239P-201ENST00000390990 POTEMA6NI47 508 aa7.59□□□□□ -1.19
RNU6-239P-201ENST00000390990 MS4A3Q96HJ5 214 aa7.59□□□□□ -1.19
RNU6-239P-201ENST00000390990 POTEJP0CG39 1038 aa7.58□□□□□ -1.2
RNU6-239P-201ENST00000390990 ASTLQ6HA08 431 aaPredicted RBP7.57□□□□□ -1.2
RNU6-239P-201ENST00000390990 POTEGQ6S5H5 508 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms