RNA–Protein interactions for RNA: ENST00000384254.1

RNU6-40P-201, Transcript of RNA, U6 small nuclear 40, pseudogene, humanhuman

BASIC

Gene RNU6-40P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-40P-201ENST00000384254 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
RNU6-40P-201ENST00000384254 AEBP2Q6ZN18 517 aaPredicted RBP22.88■■□□□ 1.25
RNU6-40P-201ENST00000384254 PHF23Q9BUL5 403 aaPredicted RBP20.14■□□□□ 0.81
RNU6-40P-201ENST00000384254 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
RNU6-40P-201ENST00000384254 PLPPR3Q6T4P5 718 aa18.93■□□□□ 0.62
RNU6-40P-201ENST00000384254 FOXD1Q16676 465 aa17.93■□□□□ 0.46
RNU6-40P-201ENST00000384254 ADRA2BP18089 450 aa17.67■□□□□ 0.42
RNU6-40P-201ENST00000384254 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
RNU6-40P-201ENST00000384254 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
RNU6-40P-201ENST00000384254 KCNA4P22459 653 aa16.86■□□□□ 0.29
RNU6-40P-201ENST00000384254 PPP4R3CPQ6ZMV5 832 aa16.7■□□□□ 0.26
RNU6-40P-201ENST00000384254 NCBP3Q53F19 620 aaKnown RBP16.52■□□□□ 0.24
RNU6-40P-201ENST00000384254 MSH5O43196 834 aa16.44■□□□□ 0.22
RNU6-40P-201ENST00000384254 EHMT2Q96KQ7 1210 aa16.36■□□□□ 0.21
RNU6-40P-201ENST00000384254 SCAF1Q9H7N4 1312 aaKnown RBP16.32■□□□□ 0.2
RNU6-40P-201ENST00000384254 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
RNU6-40P-201ENST00000384254 NPM3O75607 178 aaKnown RBP16.15■□□□□ 0.18
RNU6-40P-201ENST00000384254 CNKSR2Q8WXI2 1034 aa16.15■□□□□ 0.18
RNU6-40P-201ENST00000384254 MAPK8IP2Q13387 824 aaPredicted RBP15.85■□□□□ 0.13
RNU6-40P-201ENST00000384254 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
RNU6-40P-201ENST00000384254 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
RNU6-40P-201ENST00000384254 DMRT2Q9Y5R5 561 aa15.59■□□□□ 0.09
RNU6-40P-201ENST00000384254 DNAJC5BQ9UF47 199 aa15.57■□□□□ 0.08
RNU6-40P-201ENST00000384254 ZBTB22O15209 634 aa15.47■□□□□ 0.07
RNU6-40P-201ENST00000384254 HOXD11P31277 338 aaPredicted RBP15.45■□□□□ 0.06
RNU6-40P-201ENST00000384254 FOXD4L1Q9NU39 408 aa15.44■□□□□ 0.06
RNU6-40P-201ENST00000384254 SLC4A2P04920 1241 aa15.07■□□□□ 0
RNU6-40P-201ENST00000384254 DCAF8L1A6NGE4 600 aa15□□□□□ -0.01
RNU6-40P-201ENST00000384254 MYCNP04198 464 aaPredicted RBP14.98□□□□□ -0.01
RNU6-40P-201ENST00000384254 ATXN8OSP0DMR3 200 aa14.86□□□□□ -0.03
RNU6-40P-201ENST00000384254 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.04
RNU6-40P-201ENST00000384254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.68□□□□□ -0.06
RNU6-40P-201ENST00000384254 HNRNPUL2Q1KMD3 747 aaKnown RBP14.68□□□□□ -0.06
RNU6-40P-201ENST00000384254 SAMD1Q6SPF0 538 aaPredicted RBP14.62□□□□□ -0.07
RNU6-40P-201ENST00000384254 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
RNU6-40P-201ENST00000384254 APLP2Q06481 763 aa14.46□□□□□ -0.09
RNU6-40P-201ENST00000384254 ATF5Q9Y2D1 282 aaPredicted RBP14.42□□□□□ -0.1
RNU6-40P-201ENST00000384254 FKBP8Q14318 412 aa14.37□□□□□ -0.11
RNU6-40P-201ENST00000384254 ZNF219Q9P2Y4 722 aaPredicted RBP14.24□□□□□ -0.13
RNU6-40P-201ENST00000384254 AMER1Q5JTC6 1135 aaPredicted RBP14.06□□□□□ -0.16
RNU6-40P-201ENST00000384254 RNF39Q9H2S5 420 aa14.06□□□□□ -0.16
RNU6-40P-201ENST00000384254 TRHP20396 242 aaPredicted RBP14.05□□□□□ -0.16
RNU6-40P-201ENST00000384254 CAPN15O75808 1086 aa14□□□□□ -0.17
RNU6-40P-201ENST00000384254 C1QBPQ07021 282 aaKnown RBP13.98□□□□□ -0.17
RNU6-40P-201ENST00000384254 POTEDQ86YR6 584 aa13.98□□□□□ -0.17
RNU6-40P-201ENST00000384254 SPINK5Q9NQ38 1064 aaPredicted RBP13.98□□□□□ -0.17
RNU6-40P-201ENST00000384254 FBLN2P98095 1184 aa13.97□□□□□ -0.17
RNU6-40P-201ENST00000384254 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
RNU6-40P-201ENST00000384254 POLA2Q14181 598 aa13.9□□□□□ -0.18
RNU6-40P-201ENST00000384254 SPDYE4A6NLX3 237 aa13.87□□□□□ -0.19
RNU6-40P-201ENST00000384254 MKRN4PQ13434 485 aaPredicted RBP13.82□□□□□ -0.2
RNU6-40P-201ENST00000384254 ZBTB12Q9Y330 459 aaPredicted RBP13.81□□□□□ -0.2
RNU6-40P-201ENST00000384254 FBXO3Q9UK99 471 aa13.8□□□□□ -0.2
RNU6-40P-201ENST00000384254 ABCB7O75027 752 aa13.74□□□□□ -0.21
RNU6-40P-201ENST00000384254 PROM2Q8N271 834 aa13.62□□□□□ -0.23
RNU6-40P-201ENST00000384254 DSG3P32926 999 aa13.55□□□□□ -0.24
RNU6-40P-201ENST00000384254 VASPP50552 380 aaPredicted RBP13.52□□□□□ -0.25
RNU6-40P-201ENST00000384254 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
RNU6-40P-201ENST00000384254 ZNF692Q9BU19 519 aaPredicted RBP13.45□□□□□ -0.26
RNU6-40P-201ENST00000384254 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
RNU6-40P-201ENST00000384254 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
RNU6-40P-201ENST00000384254 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
RNU6-40P-201ENST00000384254 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
RNU6-40P-201ENST00000384254 CACNB1Q02641 598 aaPredicted RBP13.4□□□□□ -0.26
RNU6-40P-201ENST00000384254 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
RNU6-40P-201ENST00000384254 SSUH2Q9Y2M2 353 aa13.31□□□□□ -0.28
RNU6-40P-201ENST00000384254 STAG3Q9UJ98 1225 aa13.3□□□□□ -0.28
RNU6-40P-201ENST00000384254 PABPN1Q86U42 306 aaKnown RBP eCLIP13.27□□□□□ -0.29
RNU6-40P-201ENST00000384254 KLHL34Q8N239 644 aa13.25□□□□□ -0.29
RNU6-40P-201ENST00000384254 PLCD3Q8N3E9 789 aa13.21□□□□□ -0.29
RNU6-40P-201ENST00000384254 DCAF8L2P0C7V8 631 aa13.17□□□□□ -0.3
RNU6-40P-201ENST00000384254 SPOCK2Q92563 424 aa13.16□□□□□ -0.3
RNU6-40P-201ENST00000384254 PLEKHG5O94827 1062 aa13.15□□□□□ -0.3
RNU6-40P-201ENST00000384254 MIER1Q8N108 512 aa13.13□□□□□ -0.31
RNU6-40P-201ENST00000384254 PKD2Q13563 968 aa13.06□□□□□ -0.32
RNU6-40P-201ENST00000384254 ZBTB47Q9UFB7 747 aaPredicted RBP13.06□□□□□ -0.32
RNU6-40P-201ENST00000384254 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
RNU6-40P-201ENST00000384254 ECM2O94769 699 aaPredicted RBP12.99□□□□□ -0.33
RNU6-40P-201ENST00000384254 PLCB2Q00722 1185 aa12.93□□□□□ -0.34
RNU6-40P-201ENST00000384254 SPDYE1Q8NFV5 336 aaPredicted RBP12.92□□□□□ -0.34
RNU6-40P-201ENST00000384254 AKT1S1Q96B36 256 aa12.92□□□□□ -0.34
RNU6-40P-201ENST00000384254 CIZ1Q9ULV3 898 aaPredicted RBP12.89□□□□□ -0.35
RNU6-40P-201ENST00000384254 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
RNU6-40P-201ENST00000384254 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.82□□□□□ -0.36
RNU6-40P-201ENST00000384254 HAP1P54257 671 aaPredicted RBP12.81□□□□□ -0.36
RNU6-40P-201ENST00000384254 TRIM41Q8WV44 630 aa12.81□□□□□ -0.36
RNU6-40P-201ENST00000384254 PRR29P0C7W0 189 aa12.8□□□□□ -0.36
RNU6-40P-201ENST00000384254 RGL2O15211 777 aa12.77□□□□□ -0.37
RNU6-40P-201ENST00000384254 BBXQ8WY36 941 aaPredicted RBP12.77□□□□□ -0.37
RNU6-40P-201ENST00000384254 GSE1Q14687 1217 aa12.76□□□□□ -0.37
RNU6-40P-201ENST00000384254 REM2Q8IYK8 340 aaPredicted RBP12.76□□□□□ -0.37
RNU6-40P-201ENST00000384254 DCAF8Q5TAQ9 597 aa12.67□□□□□ -0.38
RNU6-40P-201ENST00000384254 FAM212AQ96EL1 285 aa12.66□□□□□ -0.38
RNU6-40P-201ENST00000384254 CREBZFQ9NS37 354 aa12.66□□□□□ -0.38
RNU6-40P-201ENST00000384254 CHGAP10645 457 aaKnown RBP12.65□□□□□ -0.38
RNU6-40P-201ENST00000384254 NUBP1P53384 320 aa12.65□□□□□ -0.38
RNU6-40P-201ENST00000384254 PAXIP1Q6ZW49 1069 aaPredicted RBP12.65□□□□□ -0.38
RNU6-40P-201ENST00000384254 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
RNU6-40P-201ENST00000384254 CFAP44Q96MT7 982 aa12.63□□□□□ -0.39
RNU6-40P-201ENST00000384254 TAOK2Q9UL54 1235 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms